BAC Information

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BAC

Clone NameB6Ng01-186J15
Chromosome5 (Build37)
Map Location 19,072,356 - 19,234,794
singlet/doubletdoublet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186J15.bB6Ng01-186J15.g
ACCGA011397GA011398
length1,098970
definitionB6Ng01-186J15.b B6Ng01-186J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,072,356 - 19,073,000)(19,233,833 - 19,234,794)
sequence
gaattcagtaagaatattacctattcagcaacattcagaattaactctag
tattgtaaaagagacagggaaagaaatcaggcattacaatttacttagat
agagctagaaatctcagggctagtctatatagtaaatacttagaacaata
gctgagtcactcccgtacacaggaatttacaatggcctaggaagaaggaa
ggttgtggttttaggaggaactggaatgttgaattattcatgaaagggtt
agtagtacagaactcccttggtgcatgtttttcactaggcccagaggaat
agcataagtaggtattaagtaagggacccctggtggtgggtttaacaata
gactagcattgcatcagacctttcacctggctcctgtgaatagctgactt
tacatagggctgatcttatctcaattgtaaacattgcctgattcctgcca
gtctgtttgtatgcattttttgttttgtgtcagataacttcagtgtacct
tggatgcccttaatgtatcacttaacttccttgtctccgtttgtaatata
agtctgatgctagttttgaggaattacattcagatacaacacccccttgt
gttcatgtctgtttgtcacttttcgctgactccttgccctgattctcctg
agggttgaggggccaactgagtccagtttgcagcacttacatattggtct
ctgacctaaattcaatggttggctgtaattatatgcaattgtctcagtca
gttgctggtagagcctctctgaggacagccatgccaggctcctgtctgca
catacaatatggcttcagtaatagtgtcaggatttggtgtgagtgtatgg
gatggatcccaagttgggccagtcactgggttggcctttctttttatttc
ggatccattttttatctcatgtatggtgcacatgtattgatagaaaaaga
tatgaaagttaagagagactatgagacagaagttctactacttacctaag
aaagtcacagaaagcttggttatcattggtaatcctggatcagctggata
ccagattatagggaaacatgatcacccaaagaacattgtgcctacagc

gaattcagataaagaaaaccttacctatttgagaaagtggttttctgtat
acatttaattatgtacttgttgtgaatgtggaaaaaaaccaagaatgtaa
acctacagtaaacatacttcagtttaagttaattggtttataattacttt
gaatacagagtaatatggtgactattaatttcctcattgctttggccaca
tacgacacacaccaactataggaataatttatgtgactcatggcttgaaa
gatgaagtctatcgtggcagagaaatcatggcagtgggagcaagaatcag
ctgtcacattctgtcttcaggtgggaagcagagagaaagggaagctggtg
cttactcagcaccctcgcttccttccccttactactggggtgaggagcat
cacctgtgggatgttgctatgggtcttccttttcagttaaacacctctgg
aacctcagaccttccaggtttttcaatatcctctgaagttggcaatgaag
agtccaattaccgtgttattgtgacgaatatttgttccttttgtgtttga
aattacaaaccctttatcaatgacagtacaattaacacacgaaagccaaa
ctccttgtagaaagaggtctgttggttttgggattttgtttgcttgtttt
tcgatatagccacatgtccaaagtgttacaaaaattattacaataagtag
tattggttttatttatttgatttatttttgaagtggttatttgagtcata
accttttttgtgtagaggcagcccatgaaagtattccctcttacgagtaa
aaaagggtaatttagtaaataattgcaaatcatggtgtcacttattactt
cggctatactaatcatgggatgctcctctcagcatggctcagcatttttg
acacataaggcaggcctggctcttttcttttaattgcaacaccatttgga
acaggcttaaacaagtatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_19072356_19073000
seq2: B6Ng01-186J15.b_482_1140

seq1  GATTCCTGCCAGTCTGTTTGTATGCATTTTTTGTTTTGTGTCAGATAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTGCCAGTCTGTTTGTATGCATTTTTTGTTTTGTGTCAGATAACT  50

seq1  TCAGTGTACCTTGGATGCCCTTAATGTATCACTTAACTTCCTTGTCTCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTACCTTGGATGCCCTTAATGTATCACTTAACTTCCTTGTCTCCG  100

seq1  TTTGTAATATAAGTCTGATGCTAGTTTTGAGGAATTACATTCAGATACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATATAAGTCTGATGCTAGTTTTGAGGAATTACATTCAGATACAA  150

seq1  CACCCCCTTGTGTTCATGTCTGTTTGTCACTTTTCGCTGACTCCTTGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCTTGTGTTCATGTCTGTTTGTCACTTTTCGCTGACTCCTTGCCC  200

seq1  TGATTCTCCTGAGGGTTGAGGGGCCAACTGAGTCCAGTTTGCAGCACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTCCTGAGGGTTGAGGGGCCAACTGAGTCCAGTTTGCAGCACTTA  250

seq1  CATATTGGTCTCTGACCTAAATTCAATGGTTGGCTGTAATTATATGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGGTCTCTGACCTAAATTCAATGGTTGGCTGTAATTATATGCAAT  300

seq1  TGTCTCAGTCAGTTGCTGGTAGAGCCTCTCTGAGGACAGCCATGCCAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGTCAGTTGCTGGTAGAGCCTCTCTGAGGACAGCCATGCCAGGC  350

seq1  TCCTGTCTGCACATACAATATGGCTTCAGTAATAGTGTCAGGATTTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTGCACATACAATATGGCTTCAGTAATAGTGTCAGGATTTGGTG  400

seq1  TGAGTGTATGGGATGGATCCCAAGTTGGGCCAGTCACTGGG-TGGCCTTT  449
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGAGTGTATGGGATGGATCCCAAGTTGGGCCAGTCACTGGGTTGGCCTTT  450

seq1  C-TTTTATTTCGGATCCA-TTTTTATCTCATGTAT-GTGCACATGTA-TG  495
      | |||||||||||||||| |||||||||||||||| ||||||||||| ||
seq2  CTTTTTATTTCGGATCCATTTTTTATCTCATGTATGGTGCACATGTATTG  500

seq1  ATAGAAAAAGATATG-AAGTTAAGAGAGACTATGAGGACAG-AGGTCTAC  543
      ||||||||||||||| ||||||||||||||||||| ||||| || |||||
seq2  ATAGAAAAAGATATGAAAGTTAAGAGAGACTATGA-GACAGAAGTTCTAC  549

seq1  TACTTACTTAAGAGAGTCACAGAAAGCTTGGTTATCA-TGGTAATCCT-G  591
      ||||||| ||||| ||||||||||||||||||||||| |||||||||| |
seq2  TACTTACCTAAGAAAGTCACAGAAAGCTTGGTTATCATTGGTAATCCTGG  599

seq1  ATCAG--TGATACCAGA-TATA-GGAAACATGAGCACCCAAAG-ACA-TG  635
      |||||   ||||||||| |||| |||||||||| ||||||||| ||| ||
seq2  ATCAGCTGGATACCAGATTATAGGGAAACATGATCACCCAAAGAACATTG  649

seq1  TGCCTACAGC  645
      ||||||||||
seq2  TGCCTACAGC  659


seq1: chr5_19233833_19234794
seq2: B6Ng01-186J15.g_64_1033 (reverse)

seq1  TCATACCTG-TTAAGCCTG-TCCAATTGGTGTTGCAATTAAAAG-AAAGA  47
      |||||| || ||||||||| ||||| |||||||||||||||||| |||||
seq2  TCATACTTGTTTAAGCCTGTTCCAAATGGTGTTGCAATTAAAAGAAAAGA  50

seq1  GCCAAGCCTGCCTTATTGTGTC-AAAATGCTGAGCCATTGCTGAGAGGAG  96
      |||| |||||||||| |||||| |||||||||||||| ||||||||||||
seq2  GCCAGGCCTGCCTTA-TGTGTCAAAAATGCTGAGCCA-TGCTGAGAGGAG  98

seq1  CATCCCATGATTAGTATAGCCGAAGT-ATAAGTGACACCATGATTTGCAA  145
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATCCCATGATTAGTATAGCCGAAGTAATAAGTGACACCATGATTTGCAA  148

seq1  TTATTTACTAA--TACCC-TTTTTACTCGTAAGA-GGAATACTTTCAT-G  190
      |||||||||||  ||||| ||||||||||||||| ||||||||||||| |
seq2  TTATTTACTAAATTACCCTTTTTTACTCGTAAGAGGGAATACTTTCATGG  198

seq1  GCTGCCTCTACACAAAAAAGGTTATGACTCAAATAACCACTTCAAAAATA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTCTACACAAAAAAGGTTATGACTCAAATAACCACTTCAAAAATA  248

seq1  AATCAAATAAATAAAACCAATACTACTTATTGTAATAATTTTTGTAACAC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATAAATAAAACCAATACTACTTATTGTAATAATTTTTGTAACAC  298

seq1  TTTGGACATGTGGCTATATCGAAAAACAAGCAAACAAAATCCCAAAACCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACATGTGGCTATATCGAAAAACAAGCAAACAAAATCCCAAAACCA  348

seq1  ACAGACCTCTTTCTACAAGGAGTTTGGCTTTCGTGTGTTAATTGTACTGT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCTCTTTCTACAAGGAGTTTGGCTTTCGTGTGTTAATTGTACTGT  398

seq1  CATTGATAAAGGGTTTGTAATTTCAAACACAAAAGGAACAAATATTCGTC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATAAAGGGTTTGTAATTTCAAACACAAAAGGAACAAATATTCGTC  448

seq1  ACAATAACACGGTAATTGGACTCTTCATTGCCAACTTCAGAGGATATTGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAACACGGTAATTGGACTCTTCATTGCCAACTTCAGAGGATATTGA  498

seq1  AAAACCTGGAAGGTCTGAGGTTCCAGAGGTGTTTAACTGAAAAGGAAGAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGGAAGGTCTGAGGTTCCAGAGGTGTTTAACTGAAAAGGAAGAC  548

seq1  CCATAGCAACATCCCACAGGTGATGCTCCTCACCCCAGTAGTAAGGGGAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCAACATCCCACAGGTGATGCTCCTCACCCCAGTAGTAAGGGGAA  598

seq1  GGAAGCGAGGGTGCTGAGTAAGCACCAGCTTCCCTTTCTCTCTGCTTCCC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCGAGGGTGCTGAGTAAGCACCAGCTTCCCTTTCTCTCTGCTTCCC  648

seq1  ACCTGAAGACAGAATGTGACAGCTGATTCTTGCTCCCACTGCCATGATTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAGACAGAATGTGACAGCTGATTCTTGCTCCCACTGCCATGATTT  698

seq1  CTCTGCCACGATAGACTTCATCTTTCAAGCCATGAGTCACATAAATTATT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCACGATAGACTTCATCTTTCAAGCCATGAGTCACATAAATTATT  748

seq1  CCTATAGTTGGTGTGTGTCGTATGTGGCCAAAGCAATGAGGAAATTAATA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGTTGGTGTGTGTCGTATGTGGCCAAAGCAATGAGGAAATTAATA  798

seq1  GTCACCATATTACTCTGTATTCAAAGTAATTATAAACCAATTAACTTAAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATATTACTCTGTATTCAAAGTAATTATAAACCAATTAACTTAAA  848

seq1  CTGAAGTATGTTTACTGTAGGTTTACATTCTTGGTTTTTTTCCACATTCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTATGTTTACTGTAGGTTTACATTCTTGGTTTTTTTCCACATTCA  898

seq1  CAACAAGTACATAATTAAATGTATACAGAAAACCACTTTCTCAAATAGGT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGTACATAATTAAATGTATACAGAAAACCACTTTCTCAAATAGGT  948

seq1  AAGGTTTTCTTTATCTGAATTC  962
      ||||||||||||||||||||||
seq2  AAGGTTTTCTTTATCTGAATTC  970


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