BAC Information

Click to search

BAC

Clone NameB6Ng01-186K17
Chromosome5 (Build37)
Map Location 53,850,593 - 53,851,634
singlet/doubletsinglet
Overlap genenone
Upstream geneLgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198
Downstream geneLOC100041911, Rbpj, Cckar, Tbc1d19, Stim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186K17.bB6Ng01-186K17.g
ACCGA011449GA011450
length1,036937
definitionB6Ng01-186K17.b B6Ng01-186K17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
aactaggaataattcagtgtctactgtgttggcagaactctccctagttg
ctgagtctgtggattgaggggaaaagtcgagtagaaacttgggctggaat
ggctcctgcacgggacaccccatgatggctgagcttcctgctcccttcct
ctgcaagaccagcatggcactctgcacgtgagaagctcagccacgtcctg
agtcctttcatatcatctagagcagtggttctcagcctgtggttcacaac
cccttttgggggtcaaaaaaccctttactggggggtcacatatcagatat
cctacatatcagatatttacattatgattcataacagtagcaacattaca
gttgtgaagtagaataaaaaataatttcagggttgggattaccacagcat
ggtaactatattaaagggtcacagcattaggtttaattaaaaaaactttt
agactttataaatatataaagtcatactacaggagtgtctgggagtttct
gatggttgtgagcccccatatgggtgctggggttaagcctaggccctctg
gatgagcaacaagtttttttttgttttttttgttttttttgtttttttgg
tttttctacagggtttctctgtgcagtcctggctgtcctggaactcgctc
tgtagaccaggctgccttgaactcagaaatccgcctgcctctgcctccca
agtgctgggactaaaggtgtgtgccaccatgcccggcaagtatttttaac
tgctggggcatctctccagtgcacagatccaattttaagaagtttctttc
tttcttttttgtttgttttgttttgttttgttttgttttgtttcgagaca
gggtttctctgtatagccctggctgtcctggaactcactctgtagaccag
gctggcctcgaactcagaaatccgcctgcctctgcctccctagtgctggg
atttaaggcatgcgccaccaccgcccggctgtttctttttttttttttct
tcctacttctgccatcacggtctttaactgaaaatc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggatatagtactactggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacaaagacaaagtttggagctgagatga
acatgtagagactgccatatccagggatccaccccataatcagcatccaa
acgctgacaccattgcatacactagcaagattttatcgaaaggacccaga
tgtagctgtctcttgtgagactatgccggggcctagcaaacacagaagtg
gatgctcacagtcagctaatggatggatcacagggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_53850593_53851634
seq2: B6Ng01-186K17.b_55_1090 (reverse)

seq1  GATTTTCAGTTTAAAGACCGTTGAAGGCAGAAGTAAGAAAGAAAAAAAAA  50
      ||||||||| |||||||||| ||| |||||||||| |||   ||||||||
seq2  GATTTTCAG-TTAAAGACCG-TGATGGCAGAAGTAGGAA--GAAAAAAAA  46

seq1  AAAAAAAAACAGCCGGGCGGTGGTGGCGCATGCCTTAAATCCCAGCACTT  100
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAAAGAAACAGCCGGGCGGTGGTGGCGCATGCCTTAAATCCCAGCACTA  96

seq1  GGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA  146

seq1  GAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCG-AA  195

seq1  ACAAAACAAAACAAAACAAAACAAAACAAAACAAAAAAGAAAGAAAGAAA  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACAAAACAAAACAAAACAAAACAAAAC-AAACAAAAAAGAAAGAAAGAAA  244

seq1  CTTCTTAAAATTGGATCTGTGCACTGGAGAGATGCCCCAGCAGTTAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAAAATTGGATCTGTGCACTGGAGAGATGCCCCAGCAGTTAAAAA  294

seq1  TACTTGCCGGGCATGGTGGCACACACCTTTAGTCCCAGCACTTGGGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCCGGGCATGGTGGCACACACCTTTAGTCCCAGCACTTGGGAGGC  344

seq1  AGAGGCAGGCGGATTTCTGAGTTCAAGGCAGCCTGGTCTACAGAGCGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGCGGATTTCTGAGTTCAAGGCAGCCTGGTCTACAGAGCGAGT  394

seq1  TCCAGGACAGCCAGGACTGCACAGAGAAACCCTGTAGAAAAACCAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACAGCCAGGACTGCACAGAGAAACCCTGTAGAAAAACCAAAAAA  444

seq1  ACAAAAAAAACAAAAAAAACAAAAAAAAACTTGTTGCTCATCCAGAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAAACAAAAAAAACAAAAAAAAACTTGTTGCTCATCCAGAGGGC  494

seq1  CTAGGCTTAACCCCAGCACCCATATGGGGGCTCACAACCATCAGAAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTTAACCCCAGCACCCATATGGGGGCTCACAACCATCAGAAACTC  544

seq1  CCAGACACTCCTGTAGTATGACTTTATATATTTATAAAGTCTAAAAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACACTCCTGTAGTATGACTTTATATATTTATAAAGTCTAAAAGTTT  594

seq1  TTTTAATTAAACCTAATGCTGTGACCCTTTAATATAGTTACCATGCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTAAACCTAATGCTGTGACCCTTTAATATAGTTACCATGCTGTG  644

seq1  GTAATCCCAACCCTGAAATTATTTTTTATTCTACTTCACAACTGTAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCCAACCCTGAAATTATTTTTTATTCTACTTCACAACTGTAATGT  694

seq1  TGCTACTGTTATGAATCATAATGTAAATATCTGATATGTAGGATATCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTGTTATGAATCATAATGTAAATATCTGATATGTAGGATATCTGA  744

seq1  TATGTGACCCCCCAGTAAAGGGTTTTTTGACCCCCAAAAGGGGTTGTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGACCCCCCAGTAAAGGGTTTTTTGACCCCCAAAAGGGGTTGTGAA  794

seq1  CCACAGGCTGAGAACCACTGCTCTAGATGATATGAAAGGACTCAGGACGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGCTGAGAACCACTGCTCTAGATGATATGAAAGGACTCAGGACGT  844

seq1  GGCTGAGCTTCTCACGTGCAGAGTGCCATGCTGGTCTTGCAGAGGAAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGCTTCTCACGTGCAGAGTGCCATGCTGGTCTTGCAGAGGAAGGG  894

seq1  AGCAGGAAGCTCAGCCATCATGGGGTGTCCCGTGCAGGAGCCATTCCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAGCTCAGCCATCATGGGGTGTCCCGTGCAGGAGCCATTCCAGC  944

seq1  CCAAGTTTCTACTCGACTTTTCCCCTCAATCCACAGACTCAGCAACTAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTTCTACTCGACTTTTCCCCTCAATCCACAGACTCAGCAACTAGG  994

seq1  GAGAGTTCTGCCAACACAGTAGACACTGAATTATTCCTAGTT  1042
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTCTGCCAACACAGTAGACACTGAATTATTCCTAGTT  1036