BAC Information

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BAC

Clone NameB6Ng01-186N01
Chromosome5 (Build37)
Map Location 110,786,291 - 110,932,783
singlet/doubletdoublet
Overlap gene2410025L10Rik
Upstream geneEG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679
Downstream geneGalnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2, Ttc28, Pitpnb, Mn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186N01.bB6Ng01-186N01.g
ACCGA011561GA011562
length742995
definitionB6Ng01-186N01.b B6Ng01-186N01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,786,291 - 110,787,032)(110,931,794 - 110,932,783)
sequence
gaattcaggaccttctgaagagcagtcaatgctcttaaccgctgagccat
ctctccagcaccccccacccattttaaaagcaatattacagggatgcata
atgaaaaccatgaacggagacttttgaaaaagacacaggagtaaagcaag
aaggagccctgagccacgggctctagtgtcttctttagaaattacctcta
agccgggcgtggtggcgcacgcctttaatcccagcactcgggaggcagag
gcaggcggatttctgagttcgaggccagcctggtctacaaagtgagttcc
aggacagccaaggctatacagagaaaccctgtctcgaaaaaccaaaccaa
aaaaaaaaaaaaaaattacctctaatgaatgggagccagggcaagactct
gtgctgttccaaagacagccaccagatggcgatatagccttggcatgaaa
gagcctgggcaggagttggtacctggctcagaaaataaaacaggcagaag
tggagtagacacacagcacacagtcttggacctctaaagtcagagatcag
gatgaaggttggctcgggaggtgattcctgggaccgttgaggcagaagct
tggtctatggaagggaaaagtcagtggaatgtttcaagatgcagcaggct
gggtaatgctggtccccggagagcctgtccagggcaattacacctcagaa
gtgctttatggctttaatatatgggcggtggaaactgggggg
gaattctagagaaaacatttatcctggcagaaggaaattttttctgcttg
gaccccttctgccttgaatatcatttcatgagattgtaatctttacggtg
gtggtggcatccaggttatggtcctgtggcattggtacaaaccaacacac
tggccacaggaaggaagtcagggtaaaggctcaggactgagtcatcagac
caggagtcagtcacctccaggacttataggatggcatcagtctttattca
gagccctgtgagtcaggcagtgggagtagcctcccctgaggtgcatacaa
ttaggggatacatgataaaccaactaaaaaccagcctgactctggggaga
gaatcaagtctataacctgcctgtcgtgaaagcgtcaggagctgaattca
gattcctgtaaatgtattccatggagagatacatgcctgaatctttatta
ctggagaggcagagacaggagggtgcctgaagcttgttggccagtcagtc
cagcagagtcaaggagctcaaggttcagtgagagatcctgcctcaaaaac
taatgactggatgctcttaactttgtggtagctcacaaccatctgtgact
cctgtcccagaggatctgatgccctcttctggcctctgagtgttccatat
gcagagtacacagacacacataaaggaaaaaacaccaatacacacaaaat
aataaaacaataatagcaacaataacaataatagtttttaaataaggagg
cagaagaagtgattcagtgatgtatttgttcttgcagagggcccagattt
tggttctcagcacccaaagggtagcttacaaccatccataactctagttc
caagggatccaatagcctctttggatttccacaaacacctagcacatact
tagtatatatgtacacgtggcagcccaaaacaactcattacacaaaaata
aaaatttcaaatcctttaattttttcaaaactagtaaagaggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_110786291_110787032
seq2: B6Ng01-186N01.b_41_782

seq1  GAATTCAGGACCTTCTGAAGAGCAGTCAATGCTCTTAACCGCTGAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACCTTCTGAAGAGCAGTCAATGCTCTTAACCGCTGAGCCAT  50

seq1  CTCTCCAGCACCCCCCACCCATTTTAAAAGCAATATTACAGGGATGCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCACCCCCCACCCATTTTAAAAGCAATATTACAGGGATGCATA  100

seq1  ATGAAAACCATGAACGGAGACTTTTGAAAAAGACACAGGAGTAAAGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAACCATGAACGGAGACTTTTGAAAAAGACACAGGAGTAAAGCAAG  150

seq1  AAGGAGCCCTGAGCCACGGGCTCTAGTGTCTTCTTTAGAAATTACCTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCCCTGAGCCACGGGCTCTAGTGTCTTCTTTAGAAATTACCTCTA  200

seq1  AGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAG  250

seq1  GCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCC  300

seq1  AGGACAGCCAAGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCCAAGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAACCAA  350

seq1  AAAAAAAAAAAAAAATTACCTCTAATGAATGGGAGCCAGGGCAAGACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAATTACCTCTAATGAATGGGAGCCAGGGCAAGACTCT  400

seq1  GTGCTGTTCCAAAGACAGCCACCAGATGGCGATATAGCCTTGGCATGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTTCCAAAGACAGCCACCAGATGGCGATATAGCCTTGGCATGAAA  450

seq1  GAGCCTGGGCAGGAGTTGGTACCTGGCTCAGAAAATAAAACAGGCAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGGCAGGAGTTGGTACCTGGCTCAGAAAATAAAACAGGCAGAAG  500

seq1  TGGAGTAGACACACAGCACACAGTCTTGGACCTCTAAAGTCAGAGATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTAGACACACAGCACACAGTCTTGGACCTCTAAAGTCAGAGATCAG  550

seq1  GATGAAGGTTGGCTCGGGAGGTGATTCCTGGGACCGTTGAGGCAGAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGGTTGGCTCGGGAGGTGATTCCTGGGACCGTTGAGGCAGAAGCT  600

seq1  TGGTCTATGGAAGGGAAAAGTCAGTGGAATGTTTCAAGATGCAGCAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTATGGAAGGGAAAAGTCAGTGGAATGTTTCAAGATGCAGCAGGCT  650

seq1  GGGTAATGCTGGTCCCCGGAGAGCCTGTCCAGGGCAATTACACCTCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATGCTGGTCCCCGGAGAGCCTGTCCAGGGCAATTACACCTCAGAA  700

seq1  GTGCTTTATGGCTTTAATAATAT-GGTGGTGGAAAATGGGGGG  742
      |||||||||||||||||| |||| || |||||||| |||||||
seq2  GTGCTTTATGGCTTTAAT-ATATGGGCGGTGGAAACTGGGGGG  742

seq1: chr5_110931794_110932783
seq2: B6Ng01-186N01.g_64_1058 (reverse)

seq1  TTTCCTCTTTACTTAGTTTT-AAAAAATTAAAGGATTTGAAAATTTTATT  49
      |||||||||||| ||||||| ||||||||||||||||||||| |||||||
seq2  TTTCCTCTTTAC-TAGTTTTGAAAAAATTAAAGGATTTGAAATTTTTATT  49

seq1  TTATGTGT-ATGAG-TGTTTT-GGCTG-CACGTGTACATATATACTAAGT  95
      || ||||| ||||| |||||| ||||| ||||||||||||||||||||||
seq2  TT-TGTGTAATGAGTTGTTTTGGGCTGCCACGTGTACATATATACTAAGT  98

seq1  ATGTGCCTAGTGTTTGTGGAAATCCAAAGAGGCTATTGGATCCCTTGGAA  145
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTAGGTGTTTGTGGAAATCCAAAGAGGCTATTGGATCCCTTGGAA  148

seq1  CTAGAGTTATGGATGGTTGTAAGCTACCCTTTGGGTGCTGAGAACC-AAA  194
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTAGAGTTATGGATGGTTGTAAGCTACCCTTTGGGTGCTGAGAACCAAAA  198

seq1  TCTGGGCCCTCTGCAAGAACAAATACATCACTGAATCACTTCTTCTGCCT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCCCTCTGCAAGAACAAATACATCACTGAATCACTTCTTCTGCCT  248

seq1  CCTTATTTAAAAACTATTATTGTTATTGTTGCTATTATTGTTTTATTATT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTTAAAAACTATTATTGTTATTGTTGCTATTATTGTTTTATTATT  298

seq1  TTGTGTGTATTGGTG-TTTTTCCTTTATGTGTGTCTGTGTACTCTGCATA  343
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTATTGGTGTTTTTTCCTTTATGTGTGTCTGTGTACTCTGCATA  348

seq1  TGGAACACTCAGAGGCCAGAAGAGGGCATCAGATCCTCTGGGACAGGAGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACACTCAGAGGCCAGAAGAGGGCATCAGATCCTCTGGGACAGGAGT  398

seq1  CACAGATGGTTGTGAGCTACCACAAAGTTAAGAGCATCCAGTCATTAGTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGGTTGTGAGCTACCACAAAGTTAAGAGCATCCAGTCATTAGTT  448

seq1  TTTGAGGCAGGATCTCTCACTGAACCTTGAGCTCCTTGACTCTGCTGGAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGCAGGATCTCTCACTGAACCTTGAGCTCCTTGACTCTGCTGGAC  498

seq1  TGACTGGCCAACAAGCTTCAGGCACCCTCCTGTCTCTGCCTCTCCAGTAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGCCAACAAGCTTCAGGCACCCTCCTGTCTCTGCCTCTCCAGTAA  548

seq1  TAAAGATTCAGGCATGTATCTCTCCATGGAATACATTTACAGGAATCTGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATTCAGGCATGTATCTCTCCATGGAATACATTTACAGGAATCTGA  598

seq1  ATTCAGCTCCTGACGCTTTCACGACAGGCAGGTTATAGACTTGATTCTCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCTCCTGACGCTTTCACGACAGGCAGGTTATAGACTTGATTCTCT  648

seq1  CCCCAGAGTCAGGCTGGTTTTTAGTTGGTTTATCATGTATCCCCTAATTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAGTCAGGCTGGTTTTTAGTTGGTTTATCATGTATCCCCTAATTG  698

seq1  TATGCACCTCAGGGGAGGCTACTCCCACTGCCTGACTCACAGGGCTCTGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACCTCAGGGGAGGCTACTCCCACTGCCTGACTCACAGGGCTCTGA  748

seq1  ATAAAGACTGATGCCATCCTATAAGTCCTGGAGGTGACTGACTCCTGGTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGACTGATGCCATCCTATAAGTCCTGGAGGTGACTGACTCCTGGTC  798

seq1  TGATGACTCAGTCCTGAGCCTTTACCCTGACTTCCTTCCTGTGGCCAGTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACTCAGTCCTGAGCCTTTACCCTGACTTCCTTCCTGTGGCCAGTG  848

seq1  TGTTGGTTTGTACCAATGCCACAGGACCATAACCTGGATGCCACCACCAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTTTGTACCAATGCCACAGGACCATAACCTGGATGCCACCACCAC  898

seq1  CGTAAAGATTACAATCTCATGAAATGATATTCAAGGCAGAAGGGGTCCAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAAGATTACAATCTCATGAAATGATATTCAAGGCAGAAGGGGTCCAA  948

seq1  GCAGAAAAAATTTCCTTCTGCCAGGATAAATGTTTTCTCTAGAATTC  990
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAAAATTTCCTTCTGCCAGGATAAATGTTTTCTCTAGAATTC  995