BAC Information

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BAC

Clone NameB6Ng01-186O12
Chromosome5 (Build37)
Map Location 40,092,339 - 40,200,261
singlet/doubletdoublet
Overlap geneHs3st1, EG665839
Upstream geneClnk, LOC384174
Downstream geneLOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186O12.bB6Ng01-186O12.g
ACCGA011630GA011631
length1,139818
definitionB6Ng01-186O12.b B6Ng01-186O12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,092,339 - 40,093,481)(40,199,451 - 40,200,261)
sequence
gaattcactctgtagaccaggctggcctcgaactcagaaattcacctgcc
tctgcctcccaagtgctgggattaaaggcgtgtgccaccatgcccggctg
ggatgattttttaagagtccatttacaaagccagctgactctgagtaaaa
caaggagcttggcatgacctatagatgaatttctcaaacttgtccagcaa
caggtatgaaatgtgtggtgtatagatataagactggctaaagataagac
cacaaaagacccaggctgagagagggtcgcagatcttctcctataatgtt
tttgttgaaaaaaaatggcagagaaaagaaaactataaatgcttaagtta
acagagcgcatagacacccaaactttaagtgtgtgcattttattgtctat
tttatgatcctcatttacaagttgcaataaacagaaaacagtcacacata
ttctatcatttttttccgtacttattggagaatggctccactagcttttt
gttttgccttggttcatttctcctccctgtgagttctgtcaatgaacttg
agaggcatttgagatgatttctgcccattatttgtttgtctgttggaggg
aagattgtctatcttgccctggttttgtaaacatggaggtatgcttacag
cctacaaaaatgttcctgaagcccacagcatgcctgctccaatgcgtggc
tacttcaaacattgactgtcatttcacatgaagttttctctcagtaaaag
ttttccatagctcttacttatctctgtttgaaatcatcttggcaaattgt
gccttgctctcatctttttgatcctgcctgcactggtgctccatagagaa
gttccatgaccaaattgaacttatctgtctctattgccatgtcatccctc
ctaattctgccttcattttagttggaagacatctcactgtaatccactaa
gattaaacttgtgggggaggagagcttatttgttctcatttgtctggcag
cttggccctgataaagttctggactagatgttaaccctctccttacaact
taaatagtttcgtgtatttttaggtagtcatactcaatatgtgcgtagga
gttcctgaactggaattcttggtagataacacaatttcc
gaattcagaagataacagctaactgttccaagtcattgtgttctgaaaaa
aaaaaacttgtggagagagacaagtagttatgaacagaggagatcacttg
ttaagatattgaaggagagagagagagagagagagagagagagagagaga
gagagagagagagagaaactacctttaaacttggaagtggtccagacctg
gaaaggatctaatggtcttcttcaagtagatttggctctggagatgagat
gtgatttgacaggtttctgtgggatatttaaacattaagatttttctgta
tatgctgttttgattcatgtaacctgacttggtgggtctgtctctagtct
tctactgtcatgggttcctttattataataatcttggagtctggaatctt
tcgcttgactccattctccaatctagaaaattctttacatattctgtgca
aaagcatgaacaacctttttgcttcccaagaagtcacttcaaatattttt
ttctggaatattttaatttactactgaaggcaaaaaaaaaaaatatatat
atatatataaaataaaaattttttaaaaagtttgccttatctagaaggag
aggtgaagatccatcgttgccccttctagggatctggagctggaaatctt
ttgtaactttaatgccagccttgtgcaatttgttgggaatcttttctaaa
gataaaagtaaagaaagttgctaaaagatctcaggtaaacagtgcttgct
tggcatttgcaatatgatggaatcaatcccctggaattattagggttata
taattaagcacacagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_40092339_40093481
seq2: B6Ng01-186O12.b_50_1188

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATTCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATTCACCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCATGCCCGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCATGCCCGGCTG  100

seq1  GGATGATTTTTTAAGAGTCCATTTACAAAGCCAGCTGACTCTGAGTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATTTTTTAAGAGTCCATTTACAAAGCCAGCTGACTCTGAGTAAAA  150

seq1  CAAGGAGCTTGGCATGACCTATAGATGAATTTCTCAAACTTGTCCAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGCTTGGCATGACCTATAGATGAATTTCTCAAACTTGTCCAGCAA  200

seq1  CAGGTATGAAATGTGTGGTGTATAGATATAAGACTGGCTAAAGATAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATGAAATGTGTGGTGTATAGATATAAGACTGGCTAAAGATAAGAC  250

seq1  CACAAAAGACCCAGGCTGAGAGAGGGTCGCAGATCTTCTCCTATAATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGACCCAGGCTGAGAGAGGGTCGCAGATCTTCTCCTATAATGTT  300

seq1  TTTGTTGAAAAAAAATGGCAGAGAAAAGAAAACTATAAATGCTTAAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAAAAAAAATGGCAGAGAAAAGAAAACTATAAATGCTTAAGTTA  350

seq1  ACAGAGCGCATAGACACCCAAACTTTAAGTGTGTGCATTTTATTGTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCGCATAGACACCCAAACTTTAAGTGTGTGCATTTTATTGTCTAT  400

seq1  TTTATGATCCTCATTTACAAGTTGCAATAAACAGAAAACAGTCACACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGATCCTCATTTACAAGTTGCAATAAACAGAAAACAGTCACACATA  450

seq1  TTCTATCATTTTTTTCCGTACTTATTGGAGAATGGCTCCACTAGCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCATTTTTTTCCGTACTTATTGGAGAATGGCTCCACTAGCTTTTT  500

seq1  GTTTTGCCTTGGTTCATTTCTCCTCCCTGTGAGTTCTGTCAATGAACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCCTTGGTTCATTTCTCCTCCCTGTGAGTTCTGTCAATGAACTTG  550

seq1  AGAGGCATTTGAGATGATTTCTGCCCATTATTTGTTTGTCTGTTGGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCATTTGAGATGATTTCTGCCCATTATTTGTTTGTCTGTTGGAGGG  600

seq1  AAGATTGTCTATCTTGCCCTGGTTTTGTAAACATGGAGGTATGCTTACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGTCTATCTTGCCCTGGTTTTGTAAACATGGAGGTATGCTTACAG  650

seq1  CCTACAAAAATGTTCCTGAAGCCCACAGCATGCCTGCTCCAATGCGTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAAAAATGTTCCTGAAGCCCACAGCATGCCTGCTCCAATGCGTGGC  700

seq1  TACTTCAAACATTGACTGTCATTTCACATGAAGTTTTCTCTCAGTAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAAACATTGACTGTCATTTCACATGAAGTTTTCTCTCAGTAAAAG  750

seq1  TTTTCCATAGCTCTTACTTATCTCTGTTTGAAATCATCTTGGCAAATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATAGCTCTTACTTATCTCTGTTTGAAATCATCTTGGCAAATTGT  800

seq1  GCCTTGCTCTCATCTTTTTGATCCTGCCTGCACTGGTGCTCCATAGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCTCTCATCTTTTTGATCCTGCCTGCACTGGTGCTCCATAGAGAA  850

seq1  GTTCCATGACCAAATTGAACTTATCTGTCTCTATTGCCATGTCATCCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATGACCAAATTGAACTTATCTGTCTCTATTGCCATGTCATCCCTC  900

seq1  CTAATTCTGCCTTCATTTTAGTTGGAAGACATCTCACTGTAATCCACTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCTGCCTTCATTTTAGTTGGAAGACATCTCACTGTAATCCACTAA  950

seq1  GA-TAAACTTGT-GGGGAGGAGAGCTTATTTGTTCTCATTTGTCTGGCAG  998
      || ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GATTAAACTTGTGGGGGAGGAGAGCTTATTTGTTCTCATTTGTCTGGCAG  1000

seq1  CTTGGCCCTGAATAAAGTTCTGGACTAGAATGTT-ACCCTCTCCTTACAA  1047
      |||||||||| ||||||||||||||||| ||||| |||||||||||||||
seq2  CTTGGCCCTG-ATAAAGTTCTGGACTAG-ATGTTAACCCTCTCCTTACAA  1048

seq1  CCTTTAAATAGTTTCTTTGTATTTTAAGGTAGTCAATACTCATAATGTGC  1097
      |  ||||||||||||  |||||||| |||||||| |||||||  ||||||
seq2  C--TTAAATAGTTTC-GTGTATTTTTAGGTAGTC-ATACTCAATATGTGC  1094

seq1  GTTAAGAGTTTCTGACATTGATTCCTTTGTAGATAACACATTTTCC  1143
      | || ||||| ||||  | || | ||| |||||||||||| |||||
seq2  G-TAGGAGTTCCTGAACTGGAATTCTTGGTAGATAACACAATTTCC  1139

seq1: chr5_40199451_40200261
seq2: B6Ng01-186O12.g_66_883 (reverse)

seq1  TTACTGTTTGCTTATTTATTTAACCCT-ATAATTCCA-GGTATTGATTCC  48
      ||||||| |||||| |||| ||||||| ||||||||| || |||||||||
seq2  TTACTGTGTGCTTAATTATATAACCCTAATAATTCCAGGGGATTGATTCC  50

seq1  ATCATCTTGCAAGTGCCAAGCAAGCACTGTTTACCTGAGATCTCTTAGC-  97
      ||||| |||||| |||||||||||||||||||||||||||||| ||||| 
seq2  ATCATATTGCAAATGCCAAGCAAGCACTGTTTACCTGAGATCTTTTAGCA  100

seq1  ACTTTCTTTACTTTTATCTTTAGAAAAGATT-CCAACAAATTGCAC-AGG  145
      ||||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  ACTTTCTTTACTTTTATCTTTAGAAAAGATTCCCAACAAATTGCACAAGG  150

seq1  CTGGCATTAAAGTTACAAA--GCTTCCAGCTCCAGATCCCTAGAAGGGGC  193
      |||||||||||||||||||    |||||||||||||||||||||||||||
seq2  CTGGCATTAAAGTTACAAAAGATTTCCAGCTCCAGATCCCTAGAAGGGGC  200

seq1  AACGATGGATCTTCACCTCTCCTTCTAGATAAGGCAAACTTTTTAAAAAA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATGGATCTTCACCTCTCCTTCTAGATAAGGCAAACTTTTTAAAAAA  250

seq1  TTTTTATTTTATATATATATATATATTTTTTTTTTTTGCCTTCAGTAGTA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTATATATATATATATATTTTTTTTTTTTGCCTTCAGTAGTA  300

seq1  AATTAAAATATTCCAGAAAAAAATATTTGAAGTGACTTCTTGGGAAGCAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATATTCCAGAAAAAAATATTTGAAGTGACTTCTTGGGAAGCAA  350

seq1  AAAGGTTGTTCATGCTTTTGCACAGAATATGTAAAGAATTTTCTAGATTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTGTTCATGCTTTTGCACAGAATATGTAAAGAATTTTCTAGATTG  400

seq1  GAGAATGGAGTCAAGCGAAAGATTCCAGACTCCAAGATTATTATAATAAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGGAGTCAAGCGAAAGATTCCAGACTCCAAGATTATTATAATAAA  450

seq1  GGAACCCATGACAGTAGAAGACTAGAGACAGACCCACCAAGTCAGGTTAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCATGACAGTAGAAGACTAGAGACAGACCCACCAAGTCAGGTTAC  500

seq1  ATGAATCAAAACAGCATATACAGAAAAATCTTAATGTTTAAATATCCCAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCAAAACAGCATATACAGAAAAATCTTAATGTTTAAATATCCCAC  550

seq1  AGAAACCTGTCAAATCACATCTCATCTCCAGAGCCAAATCTACTTGAAGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTGTCAAATCACATCTCATCTCCAGAGCCAAATCTACTTGAAGA  600

seq1  AGACCATTAGATCCTTTCCAGGTCTGGACCACTTCCAAGTTTAAAGGTAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATTAGATCCTTTCCAGGTCTGGACCACTTCCAAGTTTAAAGGTAG  650

seq1  TTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  700

seq1  TCTCCTTCAATATCTTAACAAGTGATCTCCTCTGTTCATAACTACTTGTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCAATATCTTAACAAGTGATCTCCTCTGTTCATAACTACTTGTC  750

seq1  TCTCTCCACAAGTTTTTTTTTTTCAGAACACAATGACTTGGAACAGTTAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCACAAGTTTTTTTTTTTCAGAACACAATGACTTGGAACAGTTAG  800

seq1  CTGTTATCTTCTGAATTC  811
      ||||||||||||||||||
seq2  CTGTTATCTTCTGAATTC  818