BAC Information

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BAC

Clone NameB6Ng01-187D02
Chromosome5 (Build37)
Map Location 17,453,438 - 17,454,559
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36
Downstream geneGnat3, Gnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187D02.bB6Ng01-187D02.g
ACCGA011835GA011836
length1,1781,113
definitionB6Ng01-187D02.b B6Ng01-187D02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagacccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatgttgagaagctggaagtaatcccactaaa
atcagggactagacaaggctgcccactttcacgctacctattcaacataa
tacttgaagtcctagccagagcaattcgacaacaaaaggagatcaagggg
atacaaactggaaaggaagaagtcaaaacatcactatttgcagatgatat
gatagtatatataagtgactctaaaaattccaccagagaactcctaaacc
tgataaacagcttcagtgaagtagctggatataaaattaactgaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttcacaatagacacaaataatataaaataccttggtg
tgactctaactaaggaagtcaaagatctgtatgataagaacttcaagtct
ctgaagaaagaaatcaaagaagatttcagaagatggaaagatctcccatg
ctcatggactggcaggatcaatatagtaaaaatggctatcttgccaaaaa
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aatgaattagaaagggcattttgcaaattcatctgtaataataaaaaacc
taggatagcaaaaacccttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctgtactacagagcaattgtgataaaaactgca
tggtactggtatagtgatgataagtagatcaatggaacagaattgaagac
ccaaaaatgaacccacacacctatgctcacttgatctttgacaagggagc
taaaaccatccagtggaaaaagacagcattttcaaagaatggtgcttgca
ctactggaggttatcatgtagaagaatgtgattgatccattcctatctcc
tgtactaagtcaatctagtggatcagactcccacataaaaccagagaaca
ctgatactatagaagagaaattggggcaagcttggagattggcacaggga
aatctgatagacgcatgcctggcttagatcgaattgcaatggaacctcat
gacattgccgaagcctctcgtgctgacg
gaattcaatatgcagaagtaatgtaaaaaacaattggggataatagtaaa
ttttgtaacttcggtgctggaaaggctagaaaggtatatgtggggagact
ggtggccgaatagacttgctcctgaggatcaatattcaaggttgactttt
ggcctctgcacacatgtgcatgcatgtgcacagatgctcatgaacacaca
aatttgaatgcatgtatgcctaaataagcctgtacacaaacagatggaga
agagaaaatataaatgtgtgaaaactcaggagcatgggtaggatgatacc
aaaaggaggcacccagaaaaaaatttaaaaccaggaggtcacagtgatga
ctgtacatgtcattttggcacagtggccttgcctttcatctagcactact
tgagtgtctaaggattttttccctatactttgcatgtggtagcagttatc
caaaagaattcatattgataaatagtaaatgaattatgcaagttcagaca
taggttagttctcagggagaaaagcccagatgtttgcattcactgtcagt
cagactattagagatcgaactgttcgcttggctggcaatccatcaacagt
gcttcacctgttactgaagtacatggagcttgtgtgggccttcattgctc
atcacgacaacacactttctatccagtcttcagtctcttacccacagtta
tgacatttttatgtgtaaaattcatgattttctacaaactgcattctatg
tcatgattcagttttactctcttacatgtcctcagttttggtaacgcttc
ctaatatttcataatccagtactgccacttcatcttcttaaaatgaaatt
aaaggaaagttcaagggaaaattcttcataccgttcctgaccaaggtaaa
tgctctcctatatcctctctgtgccttggcttacttcaacttaccaatgc
acgaagtgaactattgtactttcgaatcctgaaattctagctcagaatat
accacgggaaaaaatatgaagatatttaacactgtagtcttgagtttacc
attcaggtcctgactataacagtattttggtgttgttgaaaaaatcaaca
ggtttctgcatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17453438_17454559
seq2: B6Ng01-187D02.g_63_1175 (reverse)

seq1  TCATGCAGAAA-CTGTTTATTTTTTCAACAACAACAAAAATTACCTGTTA  49
      ||||||||||| ||||| ||||||||||||||| |||||  || ||||||
seq2  TCATGCAGAAACCTGTTGATTTTTTCAACAACACCAAAA--TA-CTGTTA  47

seq1  TAAGTCA-GACTTG-ATGTTAAAACTCAAGGACTACAGTGGTAAATAATT  97
      | ||||| ||| || ||| | |||||||| |||||||||| ||||||  |
seq2  T-AGTCAGGACCTGAATGGT-AAACTCAA-GACTACAGTGTTAAATA--T  92

seq1  CTTCATA-TTTTTCCCCTGGTATAATTTTCTTGAGCTAGAATTTCAGGAT  146
      ||||||| |||||||| |||||||   ||| |||||||||||||||||||
seq2  CTTCATATTTTTTCCCGTGGTATA---TTC-TGAGCTAGAATTTCAGGAT  138

seq1  TCGAAAGTACAATAGTTCACCTTCGTGCATTGGTAAGTTGAAGTAAGCCA  196
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCGAAAGTACAATAGTTCA-CTTCGTGCATTGGTAAGTTGAAGTAAGCCA  187

seq1  AGGCACAGAGAGGATATAGGAGAGCATTTACCTTGGTCAGGAACGGTATG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGAGAGGATATAGGAGAGCATTTACCTTGGTCAGGAACGGTATG  237

seq1  AAGAATTTTCCCTTGAACTTTCCTTTAATTTCATTTTAAGAAGATGAAGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTTCCCTTGAACTTTCCTTTAATTTCATTTTAAGAAGATGAAGT  287

seq1  GGCAGTACTGGATTATGAAATATTAGGAAGCGTTACCAAAACTGAGGACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTACTGGATTATGAAATATTAGGAAGCGTTACCAAAACTGAGGACA  337

seq1  TGTAAGAGAGTAAAACTGAATCATGACATAGAATGCAGTTTGTAGAAAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAGAGTAAAACTGAATCATGACATAGAATGCAGTTTGTAGAAAAT  387

seq1  CATGAATTTTACACATAAAAATGTCATAACTGTGGGTAAGAGACTGAAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTTTACACATAAAAATGTCATAACTGTGGGTAAGAGACTGAAGA  437

seq1  CTGGATAGAAAGTGTGTTGTCGTGATGAGCAATGAAGGCCCACACAAGCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATAGAAAGTGTGTTGTCGTGATGAGCAATGAAGGCCCACACAAGCT  487

seq1  CCATGTACTTCAGTAACAGGTGAAGCACTGTTGATGGATTGCCAGCCAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTACTTCAGTAACAGGTGAAGCACTGTTGATGGATTGCCAGCCAAG  537

seq1  CGAACAGTTCGATCTCTAATAGTCTGACTGACAGTGAATGCAAACATCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACAGTTCGATCTCTAATAGTCTGACTGACAGTGAATGCAAACATCTG  587

seq1  GGCTTTTCTCCCTGAGAACTAACCTATGTCTGAACTTGCATAATTCATTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCTCCCTGAGAACTAACCTATGTCTGAACTTGCATAATTCATTT  637

seq1  ACTATTTATCAATATGAATTCTTTTGGATAACTGCTACCACATGCAAAGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTATCAATATGAATTCTTTTGGATAACTGCTACCACATGCAAAGT  687

seq1  ATAGGGAAAAAATCCTTAGACACTCAAGTAGTGCTAGATGAAAGGCAAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAAAAAATCCTTAGACACTCAAGTAGTGCTAGATGAAAGGCAAGG  737

seq1  CCACTGTGCCAAAATGACATGTACAGTCATCACTGTGACCTCCTGGTTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGCCAAAATGACATGTACAGTCATCACTGTGACCTCCTGGTTTT  787

seq1  AAATTTTTTTCTGGGTGCCTCCTTTTGGTATCATCCTACCCATGCTCCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTTTCTGGGTGCCTCCTTTTGGTATCATCCTACCCATGCTCCTG  837

seq1  AGTTTTCACACATTTATATTTTCTCTTCTCCATCTGTTTGTGTACAGGCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCACACATTTATATTTTCTCTTCTCCATCTGTTTGTGTACAGGCT  887

seq1  TATTTAGGCATACATGCATTCAAATTTGTGTGTTCATGAGCATCTGTGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGGCATACATGCATTCAAATTTGTGTGTTCATGAGCATCTGTGCA  937

seq1  CATGCATGCACATGTGTGCAGAGGCCAAAAGTCAACCTTGAATATTGATC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGCACATGTGTGCAGAGGCCAAAAGTCAACCTTGAATATTGATC  987

seq1  CTCAGGAGCAAGTCTATTCGGCCACCAGTCTCCCCACATATACCTTTCTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGCAAGTCTATTCGGCCACCAGTCTCCCCACATATACCTTTCTA  1037

seq1  GCCTTTCCAGCACCGAAGTTACAAAATTTACTATTATCCCCAATTGTTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCCAGCACCGAAGTTACAAAATTTACTATTATCCCCAATTGTTTT  1087

seq1  TTACATTACTTCTGCATATTGAATTC  1122
      ||||||||||||||||||||||||||
seq2  TTACATTACTTCTGCATATTGAATTC  1113