BAC Information

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BAC

Clone NameB6Ng01-187O12
Chromosome5 (Build37)
Map Location 78,681,345 - 78,682,507
singlet/doubletsinglet
Overlap geneLOC100039398
Upstream geneRest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneMthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187O12.bB6Ng01-187O12.g
ACCGA012354GA012355
length1,1441,096
definitionB6Ng01-187O12.b B6Ng01-187O12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcaactacatcagattcactgacagcaatttgcaaactagtct
tgacttcctttgacataaggtcaagacaaacataaggatttttttattac
tattttaattacaaatattgactcccaggtcacatactacacataacagt
aattctgcagatataggctttaggaatagctttaaacagttaaagaggcc
acagcagggttcaagatgtttcaaggagtcctaactagaagcaggtgtgt
gataggaatgcagaaagtatctccatgaaaataagatatcaaactctgct
ggaggtctatgcttcaggttaagccacaggccagagtttagctgagatct
atggctgagttgaacttcagaaggaagatgcaggaccacggattttgtaa
agggaaagagcaggcccgaatggatgacagagtcaagctgaggcccctgg
gatcatctggagttctctctctgctggttccttgctgtgtacactagatg
ctgaagcaacaagttggtggagactgttgcaataacagcactaattgtcc
tgtttatggagttcaaatgaaagtatcacacccgtctctcgatctgatgt
gtttgatcatcagctcttgggcctggctgtcttgatttgactttggtata
cctttgtatatggccccaacttattctgataaatttaaaggctatctact
gggccacagacaacctacccgcagccacatttatagagagaaacggcttg
acttacccagaagttttcaattgccaaaactcagctaggactggagactc
ttgggaacatcagctctacccactttagggagaatatcttgtgtattgga
tggatagatcacctgtcaattcaataaacctatggcctataggaatgagt
agagtagaagtagaaaatcgggtaagcaaaaggaattctgtggcagagtc
atgcacaggaggagtcaccagggaagatgtaaagaggacagatacatgga
acctgagcagatgtacagcaatgtggcagatgtagttagttataattggg
ttattacagttattattctagttttctaacttggttaaaacaatagctgg
catatagcaatggttcccatgtgatataacttgtaatagcctac
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagattagctgtctcttgggagactatgccggggcccagccaaac
acagaaagttggatgctcacaagtcagctaatgggatggatcatacgggc
tcccaatgggaggagcctagaagaaagtaaccaggaggctaagggatctg
caccctataagttgaacaacattatggctaccagttacccgagctctgac
ctctagctgcatatatatccaaaagatggcctaatcgccatcatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_78681345_78682507
seq2: B6Ng01-187O12.b_48_1191 (reverse)

seq1  GTAGGCTATGTAGGTAGGCTTATTTACCAGTTATATTTAACCTTGGGACC  50
                   |||||||   |||| |||||||  | || | || |||
seq2  -------------GTAGGCT--ATTACAAGTTATA--TCACATGGGAACC  33

seq1  ATTTGCTATATCCCAGCTAT--GTTTATACAAGTTAGAAAACTAG-ATAA  97
      | ||||||||| ||||||||   ||||  |||||||||||||||| ||||
seq2  A-TTGCTATATGCCAGCTATTGTTTTAACCAAGTTAGAAAACTAGAATAA  82

seq1  TAACTTGTAATAACCCATTTAT-ACTAACCTACATTCTGCCACATGGCTG  146
      |||| |||||||||||| |||| ||||| ||||| |||||||||| ||||
seq2  TAAC-TGTAATAACCCAATTATAACTAA-CTACA-TCTGCCACATTGCTG  129

seq1  TTACATCTGCTCAGGTTCCATGTATCTGTCCTCTTTACATCTTCCCTGGT  196
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TACATCTGCTCAGGTTCCATGTATCTGTCCTCTTTACATCTTCCCTGGT  178

seq1  GACTCCTCCTGTGCATGGCTCTGCCACAGAATTCCTTTTGCTTACCCGAT  246
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GACTCCTCCTGTGCATGACTCTGCCACAGAATTCCTTTTGCTTACCCGAT  228

seq1  TTTCTACTTTCTACTCTACTCATTCCTATAGGCCATAGGTTTATTGAATT  296
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAC-TTCTACTCTACTCATTCCTATAGGCCATAGGTTTATTGAATT  277

seq1  GACAGGTGATCTATCCATCCAATACACAAGATATTCTCCCTAAAGTGGGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTGATCTATCCATCCAATACACAAGATATTCTCCCTAAAGTGGGT  327

seq1  AGAGCTGATGTTCCCAAGAGTCTCCAGTCCTAGCTGAGTTTTGGCAATTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGATGTTCCCAAGAGTCTCCAGTCCTAGCTGAGTTTTGGCAATTG  377

seq1  AAAACTTCTGGGTAAGTCAAGCCGTTTCTCTCTATAAATGTGGCTGCGGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTCTGGGTAAGTCAAGCCGTTTCTCTCTATAAATGTGGCTGCGGG  427

seq1  TAGGTTGTCTGTGGCCCAGTAGATAGCCTTTAAATTTATCAGAATAAGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGTCTGTGGCCCAGTAGATAGCCTTTAAATTTATCAGAATAAGTT  477

seq1  GGGGCCATATACAAAGGTATACCAAAGTCAAATCAAGACAGCCAGGCCCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCATATACAAAGGTATACCAAAGTCAAATCAAGACAGCCAGGCCCA  527

seq1  AGAGCTGATGATCAAACACATCAGATCGAGAGACGGGTGTGATACTTTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGATGATCAAACACATCAGATCGAGAGACGGGTGTGATACTTTCA  577

seq1  TTTGAACTCCATAAACAGGACAATTAGTGCTGTTATTGCAACAGTCTCCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTCCATAAACAGGACAATTAGTGCTGTTATTGCAACAGTCTCCA  627

seq1  CCAACTTGTTGCTTCAGCATCTAGTGTACACAGCAAGGAACCAGCAGAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTGTTGCTTCAGCATCTAGTGTACACAGCAAGGAACCAGCAGAGA  677

seq1  GAGAACTCCAGATGATCCCAGGGGCCTCAGCTTGACTCTGTCATCCATTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTCCAGATGATCCCAGGGGCCTCAGCTTGACTCTGTCATCCATTC  727

seq1  GGGCCTGCTCTTTCCCTTTACAAAATCCGTGGTCCTGCATCTTCCTTCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGCTCTTTCCCTTTACAAAATCCGTGGTCCTGCATCTTCCTTCTG  777

seq1  AAGTTCAACTCAGCCATAGATCTCAGCTAAACTCTGGCCTGTGGCTTAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAACTCAGCCATAGATCTCAGCTAAACTCTGGCCTGTGGCTTAAC  827

seq1  CTGAAGCATAGACCTCCAGCAGAGTTTGATATCTTATTTTCATGGAGATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCATAGACCTCCAGCAGAGTTTGATATCTTATTTTCATGGAGATA  877

seq1  CTTTCTGCATTCCTATCACACACCTGCTTCTAGTTAGGACTCCTTGAAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCATTCCTATCACACACCTGCTTCTAGTTAGGACTCCTTGAAAC  927

seq1  ATCTTGAACCCTGCTGTGGCCTCTTTAACTGTTTAAAGCTATTCCTAAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAACCCTGCTGTGGCCTCTTTAACTGTTTAAAGCTATTCCTAAAG  977

seq1  CCTATATCTGCAGAATTACTGTTATGTGTAGTATGTGACCTGGGAGTCAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATCTGCAGAATTACTGTTATGTGTAGTATGTGACCTGGGAGTCAA  1027

seq1  TATTTGTAATTAAAATAGTAATAAAAAAATCCTTATGTTTGTCTTGACCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTAATTAAAATAGTAATAAAAAAATCCTTATGTTTGTCTTGACCT  1077

seq1  TATGTCAAAGGAAGTCAAGACTAGTTTGCAAATTGCTGTCAGTGAATCTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAAAGGAAGTCAAGACTAGTTTGCAAATTGCTGTCAGTGAATCTG  1127

seq1  ATGTAGTTGATGAATTC  1163
      |||||||||||||||||
seq2  ATGTAGTTGATGAATTC  1144