BAC Information

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BAC

Clone NameB6Ng01-187P11
Chromosome5 (Build37)
Map Location 112,278,942 - 112,279,951
singlet/doubletsinglet
Overlap genenone
Upstream geneChek2, Ttc28, Pitpnb, Mn1
Downstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464, Myo18b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187P11.bB6Ng01-187P11.g
ACCGA012399GA012400
length1,0081,095
definitionB6Ng01-187P11.b B6Ng01-187P11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcgacgatcagaaaataaataacaccaagtctgcatttattaa
aagcagagttgctgtcagggtgccctggtttctcagaaactgtaatttgc
ctccttatgttctagggtgcttgtaactttgttttttttttttttttcaa
atcctatttttaatgatggttcttaaatgctttaaccttccttgtaaccc
accacccaccagaggtagtggaaaagaaaggatacgggggaagagggctt
gtttagaaaggttctttggatcaactccagtctgtgttgtctggaaattg
gcagtttacttcacaggttagcagcagcggctcaatccatttgcaaacgt
tccacggataccctagcagtccagtttggtggagttgggatagcaacagc
tgtgacatgacctagaagagacagagacaacaggaacactagaagttccc
agctatgcctctctcaaggaagcaaagatcagcaaaggcgcaagacccac
aagcattgcacagctagctgtaaccagcaagccacattctctttccagca
ctctgagtcctatttatactctcaaagcatcacctctcctccatgtgctt
tgcctcagcatgtgcatccgatcagcctgagtctgcagagtcccaacaaa
cacagctcaactacacaaggtaaggcagaccaatacatgcatgttgttag
cagtgaatctttcatcacgtgtcctttccatgtgcttgctttagcagaac
aatctctctcctgtttcattgaaatgtttcttcacaagtctgccttagcc
cttcatacctgtgtccactttgtcgaaacattccttccgtgcttgcacca
gcaaaacaccatccaaccaactttccaaagaaccctcaagtttctgcttc
aggtgcttcaacctcttgtgcacctccttcaaaagaacaattgtttttct
gagaatcttcatcctgagatacagaaagttgcccatgctggctcaagcca
ctgggctg
gaattctcacctgaggaataccgaatagcagagaagcacttgaaaaaatg
ttcaacatccttaatcgtcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcagctgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacatattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatcttgagactgccatatccagggatccaccccataatc
agcttccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcttagcaaac
acaagaagtggatgctcacagtcagctaatgggatggatcacagggctcc
caatggaggagctagagaaagtaccccaaggagctaaaggatctgcaacc
ctatagtgaacaacattagacctaccagtacccggagctctttgactcta
gctgcatatgatcaaaggatgcctagtcggcccatcaccttgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_112278942_112279951
seq2: B6Ng01-187P11.b_45_1052

seq1  GAATTCATCGACGATCAGAAAATAAATAACACCAAGTCTGCATTTATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCGACGATCAGAAAATAAATAACACCAAGTCTGCATTTATTAA  50

seq1  AAGCAGAGTTGCTGTCAGGGTGCCCTGGTTTCTCAGAAACTGTAATTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGTTGCTGTCAGGGTGCCCTGGTTTCTCAGAAACTGTAATTTGC  100

seq1  CTCCTTATGTTCTAGGGTGCTTGTAACTTTGTTTTTTTTTTTTTTTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTATGTTCTAGGGTGCTTGTAACTTTGTTTTTTTTTTTTTTTTCAA  150

seq1  ATCCTATTTTTAATGATGGTTCTTAAATGCTTTAACCTTCCTTGTAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATTTTTAATGATGGTTCTTAAATGCTTTAACCTTCCTTGTAACCC  200

seq1  ACCACCCACCAGAGGTAGTGGAAAAGAAAGGATACGGGGGAAGAGGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCACCAGAGGTAGTGGAAAAGAAAGGATACGGGGGAAGAGGGCTT  250

seq1  GTTTAGAAAGGTTCTTTGGATCAACTCCAGTCTGTGTTGTCTGGAAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAAAGGTTCTTTGGATCAACTCCAGTCTGTGTTGTCTGGAAATTG  300

seq1  GCAGTTTACTTCACAGGTTAGCAGCAGCGGCTCAATCCATTTGCAAACGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTACTTCACAGGTTAGCAGCAGCGGCTCAATCCATTTGCAAACGT  350

seq1  TCCACGGATACCCTAGCAGTCCAGTTTGGTGGAGTTGGGATAGCAACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGGATACCCTAGCAGTCCAGTTTGGTGGAGTTGGGATAGCAACAGC  400

seq1  TGTGACATGACCTAGAAGAGACAGAGACAACAGGAACACTAGAAGTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATGACCTAGAAGAGACAGAGACAACAGGAACACTAGAAGTTCCC  450

seq1  AGCTATGCCTCTCTCAAGGAAGCAAAGATCAGCAAAGGCGCAAGACCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGCCTCTCTCAAGGAAGCAAAGATCAGCAAAGGCGCAAGACCCAC  500

seq1  AAGCATTGCACAGCTAGCTGTAACCAGCAAGCCACATTCTCTTTCCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTGCACAGCTAGCTGTAACCAGCAAGCCACATTCTCTTTCCAGCA  550

seq1  CTCTGAGTCCTATTTATACTCTCAAAGCATCACCTCTCCTCCATGTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTCCTATTTATACTCTCAAAGCATCACCTCTCCTCCATGTGCTT  600

seq1  TGCCTCAGCATGTGCATCCGATCAGCCTGAGTCTGCAGAGTCCCAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAGCATGTGCATCCGATCAGCCTGAGTCTGCAGAGTCCCAACAAA  650

seq1  CACAGCTCAACTACACAAGGTAAGGCAGACCAATACATGCATGTTGTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTCAACTACACAAGGTAAGGCAGACCAATACATGCATGTTGTTAG  700

seq1  CAGTGAATCTTTCATCACGTGTCCTTTCCATGTGCTTGCTTTAGCAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAATCTTTCATCACGTGTCCTTTCCATGTGCTTGCTTTAGCAGAAC  750

seq1  AATCTCTCTCCTGTTTCATTGAAATGTTTCTTCACAAGTCTGCCTTAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTCTCCTGTTTCATTGAAATGTTTCTTCACAAGTCTGCCTTAGCC  800

seq1  CTTCATACCTGTGTCCACTTTGTCGAAACATTCCTTCCCGTGCTTGCACC  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTCATACCTGTGTCCACTTTGTCGAAACATTCCTT-CCGTGCTTGCACC  849

seq1  AGCAAAACACCATCCAACCAACTTTCCAAAGAACCCTCAAGTTTCTGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACACCATCCAACCAACTTTCCAAAGAACCCTCAAGTTTCTGCTT  899

seq1  CAGGTGC-TCCACCTCCTGTGCACCTCCTTCCACAGA--CATTGTTTTTC  947
      ||||||| || ||||| |||||||||||||| | |||   ||||||||||
seq2  CAGGTGCTTCAACCTCTTGTGCACCTCCTTCAAAAGAACAATTGTTTTTC  949

seq1  TGAAGATCTTTCCATCCTGAGATACAAGAAAGGTTGCCATGCTGGCTCAA  997
      |||  |||||  ||||||||||||| |||||| |  |||||||||||| |
seq2  TGAGAATCTT--CATCCTGAGATAC-AGAAAGTTGCCCATGCTGGCTC-A  995

seq1  AGCCACTGGGCTG  1010
      |||||||||||||
seq2  AGCCACTGGGCTG  1008