BAC Information

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BAC

Clone NameB6Ng01-188H16
Chromosome5 (Build37)
Map Location 39,926,075 - 40,057,367
singlet/doubletdoublet
Overlap geneHs3st1
Upstream geneWdr1, 4930421P07Rik, 6820424L24Rik, Clnk, LOC384174
Downstream geneEG665839, LOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188H16.bB6Ng01-188H16.g
ACCGA012768GA012769
length5431,129
definitionB6Ng01-188H16.b B6Ng01-188H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,926,075 - 39,926,605)(40,056,234 - 40,057,367)
sequence
gaattccctttcttcatcatctatgtccagcttgaatttctgttgctttc
atctcagtgaagcactaggcatgcctttgtgtgatgatcaatggtcattg
tcaactggattgtcttgccccaccttcaggggtgtctataaggatatttc
taaaagggattatgatttatcctggatatggaggtcctcatctcatgaac
tgaagtccaagactgagctatgaagatgggcaaagagaaatccagctcag
tgtctgcagctcccctttctactttcccatatgcctaggagtaaacacat
aacacacacaggctctggtccaaacatggtccaggctggacagaagccat
ggtccaggcatcatccctcatggctcctcttccatgaagaactgagttcc
ctgaattgtgagccaaaataaagcttccctccctaaaagctgcttcttat
cagggcatttggtcacaacatcgagaaaatttaactaatacatgagaatc
tttcctctcttggggatgggggaagtcatctaaactgttaggg
gaattccttagacattgcagagaccattttagaaaaaacaactatggtgt
gaactccaggcagtttctaattttgctcatgtcagctggtgctgcacggc
tttcgaaatgtagatcaaaatgcagattgctggttccaggtccagaattt
ctaattataagtgtccagggtctgacgattgcatttctaagatgttctca
ggtggaggaaagtacgtaacatgttgatgtgggaactggtcatgcttcag
gaagtactgacagagaagcaaagtggccatggaagttcactgtattacaa
gtcaggccttagaaacaatggcctcgcaactccttttaaagaaacagcta
ccctctgccagcagcccacaaagctgaaaagaaaatgtcctactaaaaac
tgaatgccttataacgccaagcctgagtctatgcccatgtgctggaacat
aaaatatggagtccttggtgtgattaccaaataaaagcagcagtttttta
cccatcttaatccattatatattgaataagagggatccatacacagaggg
ggtgtttctacagttcagtcatgatggagtactgatagagtcacgtcaag
gaaactaaagtaaatctagggtgtgtgttagaaagagggcagatgctcta
cttgggagactgaactgaaggtgactgtaatatggaaggggaggacaata
ttgactttcaggagccatgtacatgggagctattattaagtgggctttca
acacgcataatgggatgctttttcatgaatcatctcccttaatacactga
gctaataactgcacatcattaacattattacttgaaaattgggaaaacgg
gggtacaaaaatatcaagtgtcttttgttgtagtcatttcagtgagtctc
ctgtgggccacacctaaatgtcagctgacatcagaaccatggtgctactt
tggacatgttgctgcttccttcttgtcagagtatctaactcccaaaaagc
tccctgaaattcatgatttcaaacatgtgactggtgataaaagagagact
gttatattaaagactacttttgttcttcactgagataagattccattcag
tgaagttactggctttccacagatactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_39926075_39926605
seq2: B6Ng01-188H16.b_45_582

seq1  GAATTCCCTTTCTTCATCATCTATGTCCAGCTTGAATTTCTGTTGCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTCTTCATCATCTATGTCCAGCTTGAATTTCTGTTGCTTTC  50

seq1  ATCTCAGTGAAGCACTAGGCATGCCTTTGTGTGATGATCAATGGTCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTGAAGCACTAGGCATGCCTTTGTGTGATGATCAATGGTCATTG  100

seq1  TCAACTGGATTGTCTTGCCCCACCTTCAGGGGTGTCTATAAGGATATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGGATTGTCTTGCCCCACCTTCAGGGGTGTCTATAAGGATATTTC  150

seq1  TAAAAGGGATTATGATTTATCCTGGATATGGAGGTCCTCATCTCATGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGGATTATGATTTATCCTGGATATGGAGGTCCTCATCTCATGAAC  200

seq1  TGAAGTCCAAGACTGAGCTATGAAGATGGGCAAAGAGAAATCCAGCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCCAAGACTGAGCTATGAAGATGGGCAAAGAGAAATCCAGCTCAG  250

seq1  TGTCTGCAGCTCCCCTTTCTACTTTCCCATATGCCTAGGAGTAAACACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCAGCTCCCCTTTCTACTTTCCCATATGCCTAGGAGTAAACACAT  300

seq1  AACACACACAGGCTCTGGTCCAAACATGGTCCAGGCTGGACAGAAGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACAGGCTCTGGTCCAAACATGGTCCAGGCTGGACAGAAGCCAT  350

seq1  GGTCCAGGCATCATCCCTCATGGCTCCTCTTCCATGAAGAACTGAGTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGGCATCATCCCTCATGGCTCCTCTTCCATGAAGAACTGAGTTCC  400

seq1  CTGAATTGTGAGCCAAAATAAAGCTTCCCTCCCT-AAAGCTGCTTCTTAT  449
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGAATTGTGAGCCAAAATAAAGCTTCCCTCCCTAAAAGCTGCTTCTTAT  450

seq1  CA-GGCATTTGGTCACAACATCGAGAAAA-TTAACTAATACATGAG-ATC  496
      || |||||||||||||||||||||||||| |||||||||||||||| |||
seq2  CAGGGCATTTGGTCACAACATCGAGAAAATTTAACTAATACATGAGAATC  500

seq1  TTTCTACTCT--GGGATGTGGG-AGTCATCTAAACTGT  531
      ||||  ||||  |||||| ||| |||||||||||||||
seq2  TTTCCTCTCTTGGGGATGGGGGAAGTCATCTAAACTGT  538

seq1: chr5_40056234_40057367
seq2: B6Ng01-188H16.g_64_1192 (reverse)

seq1  TGAGTTATCTGTGAAAAGGCAGGTAACTTTTCACTGAATGGGATC-TATC  49
      |||| |||||||| |||| || |||||  |||||||||||| ||| ||||
seq2  TGAG-TATCTGTGGAAAGCCA-GTAAC--TTCACTGAATGGAATCTTATC  46

seq1  TCAGTGAAGGAACAAAAGTGGTTCCTTTATAT-ACAGTCTCTCTTTTTAT  98
      |||||||| |||||||||| | || || |||| |||||||||| ||||||
seq2  TCAGTGAA-GAACAAAAGTAG-TCTTTAATATAACAGTCTCTC-TTTTAT  93

seq1  CACCAGTCCACATGTTTGAAATCATGATTTTCAGGG-GCTTTTTGGGAGT  147
      ||||||| ||||||||||||||||||| |||||||| |||||||||||||
seq2  CACCAGT-CACATGTTTGAAATCATGAATTTCAGGGAGCTTTTTGGGAGT  142

seq1  TAGATACTCTGACAAGAAGGAAGCAGCAACATGTCC-AAGTAGCACCATG  196
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAGATACTCTGACAAGAAGGAAGCAGCAACATGTCCAAAGTAGCACCATG  192

seq1  GTTTCTGATGTCAGCCTGACATTTAGGTGTGGCCCACAGGAGACTCACTG  246
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  G-TTCTGATGTCAG-CTGACATTTAGGTGTGGCCCACAGGAGACTCACTG  240

seq1  -AATGACTACAACAAAAGACACTTGATATTTTTGTACCCCCGTTTTCCCA  295
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTACAACAAAAGACACTTGATATTTTTGTACCCCCGTTTTCCCA  290

seq1  ATTTTCAAGTAATAATGTTAATGATGTGCAGTTATTAGCTCAGTGTATTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAGTAATAATGTTAATGATGTGCAGTTATTAGCTCAGTGTATTA  340

seq1  AGGGAGATGATTCATGAAAAAGCATCCCATTATGCGTGTTGAAAGCCCAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATGATTCATGAAAAAGCATCCCATTATGCGTGTTGAAAGCCCAC  390

seq1  TTAATAATAGCTCCCATGTACATGGCTCCTGAAAGTCAATATTGTCCTCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATAGCTCCCATGTACATGGCTCCTGAAAGTCAATATTGTCCTCC  440

seq1  CCTTCCATATTACAGTCACCTTCAGTTCAGTCTCCCAAGTAGAGCATCTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCATATTACAGTCACCTTCAGTTCAGTCTCCCAAGTAGAGCATCTG  490

seq1  CCCTCTTTCTAACACACACCCTAGATTTACTTTAGTTTCCTTGACGTGAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTCTAACACACACCCTAGATTTACTTTAGTTTCCTTGACGTGAC  540

seq1  TCTATCAGTACTCCATCATGACTGAACTGTAGAAACACCCCCTCTGTGTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAGTACTCCATCATGACTGAACTGTAGAAACACCCCCTCTGTGTA  590

seq1  TGGATCCCTCTTATTCAATATATAATGGATTAAGATGGGTAAAAAACTGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCCTCTTATTCAATATATAATGGATTAAGATGGGTAAAAAACTGC  640

seq1  TGCTTTTATTTGGTAATCACACCAAGGACTCCATATTTTATGTTCCAGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTATTTGGTAATCACACCAAGGACTCCATATTTTATGTTCCAGCA  690

seq1  CATGGGCATAGACTCAGGCTTGGCGTTATAAGGCATTCAGTTTTTAGTAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCATAGACTCAGGCTTGGCGTTATAAGGCATTCAGTTTTTAGTAG  740

seq1  GACATTTTCTTTTCAGCTTTGTGGGCTGCTGGCAGAGGGTAGCTGTTTCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTCTTTTCAGCTTTGTGGGCTGCTGGCAGAGGGTAGCTGTTTCT  790

seq1  TTAAAAGGAGTTGCGAGGCCATTGTTTCTAAGGCCTGACTTGTAATACAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGAGTTGCGAGGCCATTGTTTCTAAGGCCTGACTTGTAATACAG  840

seq1  TGAACTTCCATGGCCACTTTGCTTCTCTGTCAGTACTTCCTGAAGCATGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTCCATGGCCACTTTGCTTCTCTGTCAGTACTTCCTGAAGCATGA  890

seq1  CCAGTTCCCACATCAACATGTTACGTACTTTCCTCCACCTGAGAACATCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCCCACATCAACATGTTACGTACTTTCCTCCACCTGAGAACATCT  940

seq1  TAGAAATGCAATCGTCAGACCCTGGACACTTATAATTAGAAATTCTGGAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGCAATCGTCAGACCCTGGACACTTATAATTAGAAATTCTGGAC  990

seq1  CTGGAACCAGCAATCTGCATTTTGATCTACATTTCGAAAGCCGTGCAGCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACCAGCAATCTGCATTTTGATCTACATTTCGAAAGCCGTGCAGCA  1040

seq1  CCAGCTGACATGAGCAAAATTAGAAACTGCCTGGAGTTCACACCATAGTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGACATGAGCAAAATTAGAAACTGCCTGGAGTTCACACCATAGTT  1090

seq1  GTTTTTTCTAAAATGGTCTCTGCAATGTCTAAGGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTCTAAAATGGTCTCTGCAATGTCTAAGGAATTC  1129