BAC Information

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BAC

Clone NameB6Ng01-188J11
Chromosome5 (Build37)
Map Location 56,875,119 - 57,056,987
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666405
Downstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188J11.bB6Ng01-188J11.g
ACCGA012853GA012854
length1,1981,152
definitionB6Ng01-188J11.b B6Ng01-188J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,875,119 - 56,876,321)(57,055,835 - 57,056,987)
sequence
gaattcctgattcccctggttctgtagccaaattacagagattttcatca
gcatttaatattaaattcaaattaaatatttaatttcatcagcattataa
aatattgagaagcttttagctatattcttatgtattttcatttgtgaact
tgttgtctaaattcattattatagtctcataaatagccttatttaaagcg
tttatggatatggcagtatatatatacttatacacacacacacaaacaca
cacttccgttaccaaaatatttgtatttcattttaattttatttaatttt
aatgaggacttttccttcatgtcaacatttatagtgctctgtattaaagg
taatcttctcttttgtagagtatgggctttgaagcaagttttatactatt
aggtttaagagaaaagatttaccaggatttgaatctacttctacaacctg
tcatttgaattactttaaagaagttacttgcgttcttgagttgactctta
aaaattaataattaagtataattttatgtcggaaaacaatatgaagttcc
ttaaattagttgtcacaaacaagtctcgacctctgacttaattgttgcac
tcttaatcacctttcaaacttacttattagaaaaaaaatgtacaaatggt
gactaaagagagtttaaataacaaattcatcagttgtttgtatatgaaaa
acagtaagtttaggttcaaaaccatttttattgaaagaattggatggcac
tgtgacattgtttaatgtcacattgccaaatgtactatagaaaacaatag
tgccttcagcaaaatcttgctagtgtatgcaatggtgtcagcgtttatag
gctgattataagaaggattataattatacataataatgattataagagta
tggcagtctctagatggtccatcctttcgtctcagctccaaactttgtct
ctgtaactccttccatgggtgttttgttcccagttctaagaagtgcaaag
tgtcacactttgggtcttcgttcttcttgagtttcattgtttgaaaatga
atctgaatcttggtattctaaggtttctggcctaatattccactatcagt
ggagtacatataaatgtggagtctttgtggttgtcctctgggaaggctat
gctgccctagcacacagaaatggagctctaagtctagctatttggatg

gaattcaagatttatattgtcaacattagttttgcaaaaagaagagattg
ttaacatttctaactgtgagtttaatcaaccataaattagtagaagagaa
atctcattgggccttattctcatgcctttacaagaagaattttcataata
tatgttggagagaagagcaatctgataatgatttcctgtgagtcatatac
ttcagtcatgatgtactttaattctacatttattgatcaaaatattgatt
attcttgaatcatagagtcaagaagttaataaggtatttgagaattttta
cttcattctaagatgcaatatgactcacatattttttgatgattttcatt
ggaatttttatttcataggatttacaaggttttctacattattaaaatcc
tggcactgagggaacatgcaaatactccaagtgaatagaaaaagaaatta
gactgatactaaattcaaattattttaaattgaattctttagaacagaat
gatacatacttatattgattcaatgcatagtaaatacagtctaaaattca
atctgtctctgattgtaccatatgttaaacatttcagaagatattatctc
aatttgctatttaatgttttggttttctgggggtacttactgcattaagc
aaaatttacatactagaacctgaatagaatgtcatacttacagtaaatag
ataaatgttaatttttaccataagagaagtaatgtaaaataatattcacc
ataattattttttttttaaataagagaaaaaatatctgataaaattagat
gaggcctatatgccatttaaatataactctacttcaaaacaagtcatctg
tctttctaaaactatatcatgtaatttggattcctggtaataattaaact
gtatctaagaaataatttaaaatatagaaattgtattagttgtgatcatg
agcattataagctaagattatttttgttttatttataaatcctacttaaa
atcatatagatgttcaaatgctgatgagagtaagaggcatgcattaaata
ttttatttatggtcttatttttcttcaaaattatacaatacaagagatag
ggcttatgtgatgaatcaatctattataccttacgaaaaattatagtagg
gc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_56875119_56876321
seq2: B6Ng01-188J11.b_45_1242

seq1  GAATTCCTGATTCCCCTGGTTCTGTAGCCAAATTACAGAGATTTTCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATTCCCCTGGTTCTGTAGCCAAATTACAGAGATTTTCATCA  50

seq1  GCATTTAATATTAAATTCAAATTAAATATTTAATTTCATCAGCATTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAATATTAAATTCAAATTAAATATTTAATTTCATCAGCATTATAA  100

seq1  AATATTGAGAAGCTTTTAGCTATATTCTTATGTATTTTCATTTGTGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGAGAAGCTTTTAGCTATATTCTTATGTATTTTCATTTGTGAACT  150

seq1  TGTTGTCTAAATTCATTATTATAGTCTCATAAATAGCCTTATTTAAAGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTAAATTCATTATTATAGTCTCATAAATAGCCTTATTTAAAGCG  200

seq1  TTTATGGATATGGCAGTATATATATACTTATACACACACACACAAACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGATATGGCAGTATATATATACTTATACACACACACACAAACACA  250

seq1  CACTTCCGTTACCAAAATATTTGTATTTCATTTTAATTTTATTTAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCGTTACCAAAATATTTGTATTTCATTTTAATTTTATTTAATTTT  300

seq1  AATGAGGACTTTTCCTTCATGTCAACATTTATAGTGCTCTGTATTAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGACTTTTCCTTCATGTCAACATTTATAGTGCTCTGTATTAAAGG  350

seq1  TAATCTTCTCTTTTGTAGAGTATGGGCTTTGAAGCAAGTTTTATACTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTCTCTTTTGTAGAGTATGGGCTTTGAAGCAAGTTTTATACTATT  400

seq1  AGGTTTAAGAGAAAAGATTTACCAGGATTTGAATCTACTTCTACAACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAAGAGAAAAGATTTACCAGGATTTGAATCTACTTCTACAACCTG  450

seq1  TCATTTGAATTACTTTAAAGAAGTTACTTGCGTTCTTGAGTTGACTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGAATTACTTTAAAGAAGTTACTTGCGTTCTTGAGTTGACTCTTA  500

seq1  AAAATTAATAATTAAGTATAATTTTATGTCGGAAAACAATATGAAGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATAATTAAGTATAATTTTATGTCGGAAAACAATATGAAGTTCC  550

seq1  TTAAATTAGTTGTCACAAACAAGTCTCGACCTCTGACTTAATTGTTGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAGTTGTCACAAACAAGTCTCGACCTCTGACTTAATTGTTGCAC  600

seq1  TCTTAATCACCTTTCAAACTTACTTATTAGAAAAAAAATGTACAAATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATCACCTTTCAAACTTACTTATTAGAAAAAAAATGTACAAATGGT  650

seq1  GACTAAAGAGAGTTTAAATAACAAATTCATCAGTTGTTTGTATATGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAGAGAGTTTAAATAACAAATTCATCAGTTGTTTGTATATGAAAA  700

seq1  ACAGTAAGTTTAGGTTCAAAACCATTTTTATTGAAAGAATTGGATGGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAGTTTAGGTTCAAAACCATTTTTATTGAAAGAATTGGATGGCAC  750

seq1  TGTGACATTGTTTAATGTCACATTGCCAAATGTACTATAGAAAACAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATTGTTTAATGTCACATTGCCAAATGTACTATAGAAAACAATAG  800

seq1  TGCCTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTATAG  850

seq1  GCTGATTATAAGAAGGATTATAATTATACATAATAATGATTATAAGAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTATAAGAAGGATTATAATTATACATAATAATGATTATAAGAGTA  900

seq1  TGGCAGTCTCTAGATGGTCCATCCTTTCGTCTCAGCTCCAAACTTTGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTCTCTAGATGGTCCATCCTTTCGTCTCAGCTCCAAACTTTGTCT  950

seq1  CTGTAACTCCTTCCATGGGTGTTTTGTTCCCAGTTCTAAGAAGGTGCAAA  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGTAACTCCTTCCATGGGTGTTTTGTTCCCAGTTCTAAGAA-GTGCAAA  999

seq1  GTGTCCACACTTT-GGTCTTCGTTCTTCTTGAGTTTCATTTGTTTTGAAA  1049
      |||| |||||||| ||||||||||||||||||||||||||   |||||||
seq2  GTGT-CACACTTTGGGTCTTCGTTCTTCTTGAGTTTCATT--GTTTGAAA  1046

seq1  ATTGTATCTGTATCTTGGGTATTCTAA-GTTTCTGGGCTAATA-TCCACT  1097
      | || ||||| ||||| |||||||||| |||||||| |||||| ||||| 
seq2  A-TGAATCTGAATCTT-GGTATTCTAAGGTTTCTGGCCTAATATTCCAC-  1093

seq1  TATCAGT-GAGTACATAT-AATGTGAGTTCTTTTGTGGTTGT-CTCTTGT  1144
      ||||||| |||||||||| ||||||   || ||||||||||| |||| | 
seq2  TATCAGTGGAGTACATATAAATGTGGAGTC-TTTGTGGTTGTCCTCTGGG  1142

seq1  GAGGCTATGCCGGGGCCTAGCAAACACAGAAATGGATGCTCAAAGTC-AG  1193
       |||||||||   | ||||||  ||||||||||||| |||| ||||| ||
seq2  AAGGCTATGC--TGCCCTAGC--ACACAGAAATGGA-GCTCTAAGTCTAG  1187

seq1  CTA-TTGGATG  1203
      ||| |||||||
seq2  CTATTTGGATG  1198


seq1: chr5_57055835_57056987
seq2: B6Ng01-188J11.g_67_1218 (reverse)

seq1  GCCCTACTATATATTTTTCGTAA-GTATAATAGATTGATCCATCACATA-  48
      ||||||||||| ||||||||||| ||||||||||||||| ||||||||| 
seq2  GCCCTACTATA-ATTTTTCGTAAGGTATAATAGATTGATTCATCACATAA  49

seq1  -GCCTATTTCTTTGTATTGTTAATAATTTTTGAAGAAAA--TAGA-CATA  94
        ||||| || |||||||||  |||| ||||||||||||   ||| ||||
seq2  GCCCTATCTC-TTGTATTGT--ATAA-TTTTGAAGAAAAATAAGACCATA  95

seq1  AATTAAAATTATTTAATGCATGCCTCTTACTCTCATCAGCATTTGAACAT  144
      |||  ||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAT--AAAATATTTAATGCATGCCTCTTACTCTCATCAGCATTTGAACAT  143

seq1  CTATATGATTTTAAGTAGGATTTTATAAATAAAACAAAAATAATCTTAGC  194
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTATATGATTTTAAGTAGGA-TTTATAAATAAAACAAAAATAATCTTAGC  192

seq1  TTATAATGCTCATGATCACAACTAATACAATTTCTATATTTTAAATTATT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGCTCATGATCACAACTAATACAATTTCTATATTTTAAATTATT  242

seq1  TCTTAGATACAGTTTAATTATTACCAGGAATCCAAATTACATGATATAGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGATACAGTTTAATTATTACCAGGAATCCAAATTACATGATATAGT  292

seq1  TTTAGAAAGACAGATGACTTGTTTTGAAGTAGAGTTATATTTAAATGGCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAGACAGATGACTTGTTTTGAAGTAGAGTTATATTTAAATGGCA  342

seq1  TATAGGCCTCATCTAATTTTATCAGATATTTTTTCTCTTATTT-AAAAAA  393
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATAGGCCTCATCTAATTTTATCAGATATTTTTTCTCTTATTTAAAAAAA  392

seq1  AAATAATTATGGTGAATATTATTTTACATTACTTCTCTTATGGTAAAAAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTATGGTGAATATTATTTTACATTACTTCTCTTATGGTAAAAAT  442

seq1  TAACATTTATCTATTTACTGTAAGTATGACATTCTATTCAGGTTCTAGTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTATCTATTTACTGTAAGTATGACATTCTATTCAGGTTCTAGTA  492

seq1  TGTAAATTTTGCTTAATGCAGTAAGTACCCCCAGAAAACCAAAACATTAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTTTGCTTAATGCAGTAAGTACCCCCAGAAAACCAAAACATTAA  542

seq1  ATAGCAAATTGAGATAATATCTTCTGAAATGTTTAACATATGGTACAATC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAATTGAGATAATATCTTCTGAAATGTTTAACATATGGTACAATC  592

seq1  AGAGACAGATTGAATTTTAGACTGTATTTACTATGCATTGAATCAATATA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGATTGAATTTTAGACTGTATTTACTATGCATTGAATCAATATA  642

seq1  AGTATGTATCATTCTGTTCTAAAGAATTCAATTTAAAATAATTTGAATTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTATCATTCTGTTCTAAAGAATTCAATTTAAAATAATTTGAATTT  692

seq1  AGTATCAGTCTAATTTCTTTTTCTATTCACTTGGAGTATTTGCATGTTCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCAGTCTAATTTCTTTTTCTATTCACTTGGAGTATTTGCATGTTCC  742

seq1  CTCAGTGCCAGGATTTTAATAATGTAGAAAACCTTGTAAATCCTATGAAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGCCAGGATTTTAATAATGTAGAAAACCTTGTAAATCCTATGAAA  792

seq1  TAAAAATTCCAATGAAAATCATCAAAAAATATGTGAGTCATATTGCATCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTCCAATGAAAATCATCAAAAAATATGTGAGTCATATTGCATCT  842

seq1  TAGAATGAAGTAAAAATTCTCAAATACCTTATTAACTTCTTGACTCTATG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGAAGTAAAAATTCTCAAATACCTTATTAACTTCTTGACTCTATG  892

seq1  ATTCAAGAATAATCAATATTTTGATCAATAAATGTAGAATTAAAGTACAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGAATAATCAATATTTTGATCAATAAATGTAGAATTAAAGTACAT  942

seq1  CATGACTGAAGTATATGACTCACAGGAAATCATTATCAGATTGCTCTTCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTGAAGTATATGACTCACAGGAAATCATTATCAGATTGCTCTTCT  992

seq1  CTCCAACATATATTATGAAAATTCTTCTTGTAAAGGCATGAGAATAAGGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACATATATTATGAAAATTCTTCTTGTAAAGGCATGAGAATAAGGC  1042

seq1  CCAATGAGATTTCTCTTCTACTAATTTATGGTTGATTAAACTCACAGTTA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGAGATTTCTCTTCTACTAATTTATGGTTGATTAAACTCACAGTTA  1092

seq1  GAAATGTTAACAATCTCTTCTTTTTGCAAAACTAATGTTGACAATATAAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTAACAATCTCTTCTTTTTGCAAAACTAATGTTGACAATATAAA  1142

seq1  TCTTGAATTC  1153
      ||||||||||
seq2  TCTTGAATTC  1152


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