BAC Information

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BAC

Clone NameB6Ng01-188M21
Chromosome5 (Build37)
Map Location 96,544,029 - 96,544,631
singlet/doubletsinglet
Overlap geneCnot6l
Upstream geneLOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231
Downstream geneLOC100040559, Mrpl1, Fras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188M21.bB6Ng01-188M21.g
ACCGA013003GA013004
length1,186949
definitionB6Ng01-188M21.b B6Ng01-188M21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcatctgattcagagctactaagagctggctccttgagctcat
ctagtgatgagtataggctccttctcctagagacctccgctaattgatct
tttttcttttcttttttcttttccttccttctaatctctccccaggtatt
cttacctgacctaaacttttcctcgggttcaagacccgtggaaaggcctg
tatacttattttgtgtaccatatttcctctttgctcctactctctctccc
cgctttacttctgatagattgccctgaatttcatccagaattttcagccc
tgccttaaccgcttgataacatgtgaaaaggaacaaaaaggctcctaaca
ctagagaaagttcaaggccaaacataccttgtaaagctatttcccacttt
acttctgatagactgtcttgaatttcgttagaaagttcaaggccagacgt
accttgtaaagctatttcccactttacttctgatagactgtcttgaattt
cgttagaaagttcaagaccagacttaccttgtaaagctatacttacgggt
accctgttccccagctgaagagttctgaattcacgcagttgaatccttct
caacagtctgtgttgcgggaaaacttcattaccaccgttccccagctgag
gagttctgaatccaggctggatccttctcaacagtctgttttacgggaac
acttcattaccatgccccttagttctggttccggaatgagggatcttcct
tgcgccggtgatggtaaccgtcccagattttcttgtcccgggttttctcg
tcccaggtcttctcgtcccgggtctcagcaccaactcttacacgcgtttg
cgaccggccaggaaagacgcaacaaaccggaatcttctgcggcaaaagct
ttattgcttacatcttcaggagtaggagagcaagagccagagcaagagct
ctattgcttacatctttaggagccagagcgcagagagcagagagcagagc
aagagagagaatggcgaaccccgtccctttagagaattatcctccgccta
gacgtgtcactccctgattgctgcagccatccatgagtgtcttcacggaa
gcgaagccatggaagtgagaactaccttggccatgccgatatggtcacca
cttgaacacagagtttcaggccatcttgtgcaacga
gaattccccagatgtaggaagagagcttaaggcagaggctggggttgtgg
aatgaacaaggacagacagagaacacttagaccagtgggaagtctaaggt
gcacgctgacactgcttaaacagaccaaacctatggataaggagcataga
aaagtctgaagaaaggcacagcaaacattgttaaagtgaatcatgatgga
aagtttcctagaattaggggaggaggtgctattcaaacacaggaggcatt
taggataccaaacggggtggggaaggaagaaacaaagaaaaaaaaaaatc
aaagaaaagagaacctcccttgatcatgtggtaattaaaacactaaacat
acaaaataaagtttaaaaatagtaaaagagaagtccaagtcatacacagg
ccatcagaataaaacaggttactcaattgaaaatgcaaaagccaagcaag
cctgtgtagatgtatttcaagttctgaaagacaactgccaacccagacag
gtataaaactaacagtcatcattgaagaaaaaagtaaaacttgatgtaat
aaaaatgttttcaaaaggctaaaaaaattcatgactactaagctatacaa
aaaaaaaaaaaaaaaacttgaaggaatcctttggactggagaaaaacaaa
atgatctgtaaggccacaggacataaataataccctagaataatagggta
agcaagacagatagaagggggaaaaaaaacaaatgctgtgaaatcaacaa
agtaacaggaatcaatacataccttttaagattaactgtgattattaatg
gtctctgaaactgctagaaaaaaaagtagggagcacatgtcaagatatag
gcatcggtaagaactttctgaataggactccaatcactcaggaataatca
acaaacctgaggctcataaaatttaatgtaagaagtatttgtatagcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_96544029_96544631
seq2: B6Ng01-188M21.g_67_669

seq1  GAATTCCCCAGATGTAGGAAGAGAGCTTAAGGCAGAGGCTGGGGTTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAGATGTAGGAAGAGAGCTTAAGGCAGAGGCTGGGGTTGTGG  50

seq1  AATGAACAAGGACAGACAGAGAACACTTAGACCAGTGGGAAGTCTAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAAGGACAGACAGAGAACACTTAGACCAGTGGGAAGTCTAAGGT  100

seq1  GCACGCTGACACTGCTTAAACAGACCAAACCTATGGATAAGGAGCATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCTGACACTGCTTAAACAGACCAAACCTATGGATAAGGAGCATAGA  150

seq1  AAAGTCTGAAGAAAGGCACAGCAAACATTGTTAAAGTGAATCATGATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTGAAGAAAGGCACAGCAAACATTGTTAAAGTGAATCATGATGGA  200

seq1  AAGTTTCCTAGAATTAGGGGAGGAGGTGCTATTCAAACACAGGAGGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCTAGAATTAGGGGAGGAGGTGCTATTCAAACACAGGAGGCATT  250

seq1  TAGGATACCAAACGGGGTGGGGAAGGAAGAAACAAAGAAAAAAAAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATACCAAACGGGGTGGGGAAGGAAGAAACAAAGAAAAAAAAAAATC  300

seq1  AAAGAAAAGAGAACCTCCCTTGATCATGTGGTAATTAAAACACTAAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGAGAACCTCCCTTGATCATGTGGTAATTAAAACACTAAACAT  350

seq1  ACAAAATAAAGTTTAAAAATAGTAAAAGAGAAGTCCAAGTCATACACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAAAGTTTAAAAATAGTAAAAGAGAAGTCCAAGTCATACACAGG  400

seq1  CCATCAGAATAAAACAGGTTACTCAATTGAAAATGCAAAAGCCAAGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGAATAAAACAGGTTACTCAATTGAAAATGCAAAAGCCAAGCAAG  450

seq1  CCTGTGTAGATGTATTTCAAGTTCTGAAAGACAACTGCCAACCCAGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTAGATGTATTTCAAGTTCTGAAAGACAACTGCCAACCCAGACAG  500

seq1  GTATAAAACTAACAGTCATCATTGAAGAAAAAAGTAAAACTTGATGTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAACTAACAGTCATCATTGAAGAAAAAAGTAAAACTTGATGTAAT  550

seq1  AAAAATGTTTTCAAAAGGCTAAAAAAATTCATGACTACTAAGCTATACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTTTTCAAAAGGCTAAAAAAATTCATGACTACTAAGCTATACAA  600

seq1  AAA  603
      |||
seq2  AAA  603