BAC Information

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BAC

Clone NameB6Ng01-189O09
Chromosome5 (Build37)10 (Build37)
Map Location 145,562,479 - 145,562,822129,630,739 - 129,631,731
singlet/doubletsingletsinglet
Overlap geneTrrap
Upstream geneEif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427
Downstream geneSmurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065, Cyp3a41
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189O09.bB6Ng01-189O09.g
ACCGA013797GA013798
length549992
definitionB6Ng01-189O09.b B6Ng01-189O09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,562,479 - 145,562,822)(129,630,739 - 129,631,731)
sequence
ctgatatttccaatcttttaacattaaggtgtattggattttgtcaaatg
ctttttcatcatgtaatgagatgatcatgtgatttttttattgagtttgt
ttatatactggattactttggcggattttcatattttgaaacatcatggg
ataaagcctactttactgtggtgaataatggttttatgtgttgttggatt
tggtttgttgggtcttgatgcagccattgcagacagtgacaaaaaaacgc
aagagacagttttaccccagaacacacatggtcactgtactgttaagcag
agcaacttgaaagcaatgtctcttgggtccccagccgtagaccacacaga
ggttaccaagattaattttaaagttaccacaaagaaactctaggaaacaa
ctggtgttcagctgtctgaacagctctgactgcgccagagtgcgtcagca
actctgctgagcacagggctttggggctctgaggtaaaacaggcagggga
agatgctgctcaagtgtgcacataactactgtggcatctggaaagagac
gaattcttgatctccaaaacttttgacagtgttgtttactataatactgg
ggtgattaaaaagcagacaatagaaactctcattccaatttcttcaaaag
aataatttaaatttactacagatttgaagataattttttcatttttattt
aagacctttagttgctcaacatttaattttttatgtcatttgtcttgttt
gtatgtatgcatgcatgcatgcatctgcattatatactacctatgcaaag
gtcagatgtcccatcttaagagtcagttctttatttccacctatctagat
gagaaaaaaaatattagagctcgaaagaaagttttttaaaaaactgaatt
atcaccaaaataaagggggaaaaaaggaacgggtaaagaatgaagggaat
gttcttaggtcctgaggagacttgtggggctccaagagcatcatagtccc
ccatggaagcctttggagtccccaagactaattaacttggaaacttcccc
cactaatcctttcccagtagggtcctcctggaacacaacttgcagaggtg
agttgtacatggttcctgaaacccattgtctcgctctgggctggctcttt
agtcctcaggagacttgtgggaccccaagagtgtcttttcctccgtgtaa
gacttcggcgcattctagtcatgtgcttcccagacaaagacttaagaggt
gagttgcatgcactctccttaacatcattatctagccctgtcccaagaag
ccttgtgggacccttagagtgtactgtttgcctgtggagactttttgaga
cccccaaaagctaccagtttgaacattgtcccatcaatctctgcaaatgc
cacgtgaagcatagcatccaaatcatgtaccctgacttccatagtttgct
ccgacggattcaacactcttcctgagaggtgctgctttcatcaggatctt
tctgccacaccagggaataccaaatgcctaaggtcagcataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_145562479_145562822
seq2: B6Ng01-189O09.b_254_597 (reverse)

seq1  GTCTCTTTCCAGATGCCACAGTAGTTATGTGCACACTTGAGCAGCATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTCCAGATGCCACAGTAGTTATGTGCACACTTGAGCAGCATCTT  50

seq1  CCCCTGCCTGTTTTACCTCAGAGCCCCAAAGCCCTGTGCTCAGCAGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCTGTTTTACCTCAGAGCCCCAAAGCCCTGTGCTCAGCAGAGTT  100

seq1  GCTGACGCACTCTGGCGCAGTCAGAGCTGTTCAGACAGCTGAACACCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACGCACTCTGGCGCAGTCAGAGCTGTTCAGACAGCTGAACACCAGT  150

seq1  TGTTTCCTAGAGTTTCTTTGTGGTAACTTTAAAATTAATCTTGGTAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTAGAGTTTCTTTGTGGTAACTTTAAAATTAATCTTGGTAACCT  200

seq1  CTGTGTGGTCTACGGCTGGGGACCCAAGAGACATTGCTTTCAAGTTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGTCTACGGCTGGGGACCCAAGAGACATTGCTTTCAAGTTGCTC  250

seq1  TGCTTAACAGTACAGTGACCATGTGTGTTCTGGGGTAAAACTGTCTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAACAGTACAGTGACCATGTGTGTTCTGGGGTAAAACTGTCTCTTG  300

seq1  CGTTTTTTTGTCACTGTCTGCAATGGCTGCATCAAGACCCAACA  344
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTTTTGTCACTGTCTGCAATGGCTGCATCAAGACCCAACA  344

seq1: chr10_129630739_129631731
seq2: B6Ng01-189O09.g_67_1058 (reverse)

seq1  TTATGCTGACCTTTAGGCATCTGGTATTCCCTGGTGTTGGCTGGATGATC  50
      ||||||||||| |||||||| ||||||||||||||| |||| | | ||||
seq2  TTATGCTGACC-TTAGGCATTTGGTATTCCCTGGTG-TGGCAGAAAGATC  48

seq1  CTGATGAAAGCAGCACCTCTCAGGAAGAGTGTTG-ATCTGTGGGA-CAAA  98
      |||||||||||||||||||||||||||||||||| ||| || ||| ||||
seq2  CTGATGAAAGCAGCACCTCTCAGGAAGAGTGTTGAATCCGTCGGAGCAAA  98

seq1  CAATGGAGGTCAGGGTACCTGATTTGGATGCTATGCTTCAAGTGGCATTT  148
      | ||||| |||||||||| ||||||||||||||||||||| |||||||||
seq2  CTATGGAAGTCAGGGTACATGATTTGGATGCTATGCTTCACGTGGCATTT  148

seq1  GCAGGAGATTGATGGGACAATGTTCTAAGCTGGTAG-TTCTTGGGGTCTC  197
      ||| ||||||||||||||||||||| || ||||||| || | ||||||||
seq2  GCA-GAGATTGATGGGACAATGTTC-AAACTGGTAGCTTTTGGGGGTCTC  196

seq1  AAAAAGTCTCCACAGGCAAACAGAACACTCTAAGGGTCCCACAAGGCTTC  247
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAAAGTCTCCACAGGCAAACAGTACACTCTAAGGGTCCCACAAGGCTTC  246

seq1  TTGGGACAGGGCTAGATAATGATGTTAAGGAGACTGCATGCAACTCACCT  297
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTGGGACAGGGCTAGATAATGATGTTAAGGAGAGTGCATGCAACTCACCT  296

seq1  CTTAAGTCTTTGTCTGGGAAGAACCTGACTAGAATGCACCGAAGTCTTAC  347
      ||||||||||||||||||||| || |||||||||||| ||||||||||||
seq2  CTTAAGTCTTTGTCTGGGAAGCACATGACTAGAATGCGCCGAAGTCTTAC  346

seq1  ACGGAGGAAAAGACACTCTTGGGGTCCCACAAGTCTCCTGAGGACTAAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGGAAAAGACACTCTTGGGGTCCCACAAGTCTCCTGAGGACTAAAG  396

seq1  AGCCAGCCCAGAGCGAGACAATGGGTTTCAGGAACCATGTACAACTCACC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCCCAGAGCGAGACAATGGGTTTCAGGAACCATGTACAACTCACC  446

seq1  TCTGCAAGTTGTGTTCCAGGAGGACCCTACTGGGAAAGGATTAGTGGGGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAGTTGTGTTCCAGGAGGACCCTACTGGGAAAGGATTAGTGGGGG  496

seq1  AAGTTTCCAAGTTAATTAGTCTTGGGGACTCCAAAGGCTTCCATGGGGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCAAGTTAATTAGTCTTGGGGACTCCAAAGGCTTCCATGGGGGA  546

seq1  CTATGATGCTCTTGGAGCCCCACAAGTCTCCTCAGGACCTAAGAACATTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATGCTCTTGGAGCCCCACAAGTCTCCTCAGGACCTAAGAACATTC  596

seq1  CCTTCATTCTTTACCCGTTCCTTTTTTCCCCCTTTATTTTGGTGATAATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATTCTTTACCCGTTCCTTTTTTCCCCCTTTATTTTGGTGATAATT  646

seq1  CAGTTTTTTAAAAAACTTTCTTTCGAGCTCTAATATTTTTTTTCTCATCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTTAAAAAACTTTCTTTCGAGCTCTAATATTTTTTTTCTCATCT  696

seq1  AGATAGGTGGAAATAAAGAACTGACTCTTAAGATCTGACATCTGACCTTT  747
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  AGATAGGTGGAAATAAAGAACTGACTCTTAAGATGGGACATCTGACCTTT  746

seq1  GCATAGGTAGTATATAATGCAGATGCATGCATGCATGCATACATACAAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGGTAGTATATAATGCAGATGCATGCATGCATGCATACATACAAAC  796

seq1  AAGACAAATGACATAAAAAATTAAATGTTGAGCAACTAAAGGTCTTAAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAATGACATAAAAAATTAAATGTTGAGCAACTAAAGGTCTTAAAT  846

seq1  AAAAATGAAAAAATTATCTTCAAATCTGTAGTAAATTTAAATTATTCTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAAAAAATTATCTTCAAATCTGTAGTAAATTTAAATTATTCTTT  896

seq1  TGAAGAAATTTGAATGAGAGTTTCTATTGTCTGCTTCTTAATCACGCCAG  947
      |||||||||| ||||||||||||||||||||||||| |||||||| ||||
seq2  TGAAGAAATTGGAATGAGAGTTTCTATTGTCTGCTTTTTAATCACCCCAG  946

seq1  TATTATAGTAAACAACACTGTCAAAAGTTTTGGAGATCAAGAATTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAGTAAACAACACTGTCAAAAGTTTTGGAGATCAAGAATTC  992