BAC Information

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BAC

Clone NameB6Ng01-190D22
Chromosome5 (Build37)
Map Location 49,122,692 - 49,248,779
singlet/doubletdoublet
Overlap geneKcnip4
Upstream geneLOC100040876, Slit2, 4933428G09Rik
Downstream geneLOC100041668, LOC100041659, EG433885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190D22.bB6Ng01-190D22.g
ACCGA014049GA014050
length1,179984
definitionB6Ng01-190D22.b B6Ng01-190D22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,247,605 - 49,248,779)(49,122,692 - 49,123,371)
sequence
gaattcaagtccattaagagacaaaatgagtagctttagttgtcaacctg
acataacttagaatagagaagcagcttttcccaaatgagcaaacaagtga
gtgagggcatattcatttctctgtgcttgaccacagaggggatggatcta
gctgctggaagttcttaccttactttctccataataaaaacaacaacctg
aattgcaggcaaaataggcctccttctccccttcattgttgtttgccatg
gtattttatcaaagcaacaaaaatggaattagaacagggaatagctttct
tctaacagtctagatccccatgctctactcaaagccaacagctccacttt
cattctttttcattcctggtatttctgtgttaattggttcaacagagtac
ataacttaaaaagactgagacctactgccctagatagtcctaaagatcac
acagaatatggaaagtccctggaccaatgatactacctagtgactgaagt
atttagcaggaagtagcgaagctccagtcccttgctgaattgtgaataga
cctgattcgatattgaaggaggtattcaacatggtaacctcaaataagtt
tggttcatatctggaaaacaatcagatggaactaagaaacatttaagtta
gaattgtttgaaacatagctctttctcccatgtgtatctttttccccaac
tttagaaacatacacttacttctgtcttataaatttctaacattcatgat
gatatctaccaacacaatgtaacaagaatggggaggcagaggtatcaaaa
aacctctggatagacttttgggatttagtcagtgctcatatgtattttac
tcaataatcaagccctgtccaccacaagtgctcactaaacttcaaatcca
gacattttatttcttcaatagaaaagtacattttactcggatcattaaag
gcaactcataaacatttccttcctttcttgcttgtttctagttctttcac
tttattatctcctaatataaacagggttggggttgtttggcataaccctt
tgagcccctgccatatgctggtttaaccttgaacacatcttttttctgtc
tagcaacatcaagtataattttggtaggctcttaatcaagccaatataaa
ttctaattctgagtatttggcggatgaag

gaattcttctcaagtaagcctggacattaattatgattctaaagttccca
agtgatccttctgaatgtctggtttgagtatccttgtatgtctgcctcag
aaccattttacattctaaaatttgctctccccttgttcccttgatatata
taacaatgcaatttaaaaatacttttcactagaaagacagcattttcaac
aattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcga
tccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaac
ttcacttaaaaccagatacactgaaacttatagaggagaaagtggggaaa
agccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaat
ggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactcc
aaagtttctgcaaggcaaaagataccgtcaataagacaaaaagaccacca
acagattgggaaaggatctttacctatcctaaatcagataggggactaat
atccaacatatataaagaactcaagaaggtggacttcagaaaatcaaata
accccattaaaaaatggggctcagaactgaacaaagaattctcacctgag
gaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaat
catcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccag
tcagaatggctaagatcaaaaattcacgtgacagcagatgctggcgtaga
tgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgt
acaaccactctggaaattagtctggcggttcctcagaaaattgggacaat
agtactaccggaggatccagcaatacctctcctgggcatatatccagaag
atgccccaactggtaagaaggacacatgctccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49247605_49248779
seq2: B6Ng01-190D22.b_44_1222 (reverse)

seq1  CTTCAT-CACCAAATACTCAGAA-TAGATATAATTATTGCTTTGATT-AG  47
      |||||| | |||||||||||||| |||| ||   |||||  |||||| ||
seq2  CTTCATCCGCCAAATACTCAGAATTAGA-ATTTATATTGGCTTGATTAAG  49

seq1  AGCC--CTACAAATATAC-TGATGTTGCTAGACAAGAAAAAGATGTG-TC  93
      ||||  | | || ||||| |||||||||||||||  ||||||||||| ||
seq2  AGCCTACCAAAATTATACTTGATGTTGCTAGACAGAAAAAAGATGTGTTC  99

seq1  AAGGTTAAACCAGCATAATGGGCAGGGGGCCTCAAA-GGTTATGCCAAAC  142
      |||||||||||||||||   ||||||||  |||||| |||||||||||||
seq2  AAGGTTAAACCAGCATA--TGGCAGGGG--CTCAAAGGGTTATGCCAAAC  145

seq1  AA-CCCAACCCTGTTTATA-TAGGAGATAATAAAGTGAAAGAAACTAGAA  190
      || |||||||||||||||| ||||||||||||||||||||| |||||| |
seq2  AACCCCAACCCTGTTTATATTAGGAGATAATAAAGTGAAAG-AACTAG-A  193

seq1  AACAAGCAAGAAAGGAAGGAAATGTTTATGAGTTGCC-TTAATGATCCGA  239
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AACAAGCAAGAAAGGAAGGAAATGTTTATGAGTTGCCTTTAATGATCCGA  243

seq1  GTAAAATGTACTTTTCTATTGAAGAAATAAAATGTCTGGATTTGAAGTTT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATGTACTTTTCTATTGAAGAAATAAAATGTCTGGATTTGAAGTTT  293

seq1  AGTGAGCACTTGTGGTGGACAGGGCTTGATTATTGAGTAAAATACATATG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCACTTGTGGTGGACAGGGCTTGATTATTGAGTAAAATACATATG  343

seq1  AGCACTGACTAAATCCCAAAAGTCTATCCAGAGGTTTTTTGATACCTCTG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGACTAAATCCCAAAAGTCTATCCAGAGGTTTTTTGATACCTCTG  393

seq1  CCTCCCCATTCTTGTTACATTGTGTTGGTAGATATCATCATGAATGTTAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCATTCTTGTTACATTGTGTTGGTAGATATCATCATGAATGTTAG  443

seq1  AAATTTATAAGACAGAAGTAAGTGTATGTTTCTAAAGTTGGGGAAAAAGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATAAGACAGAAGTAAGTGTATGTTTCTAAAGTTGGGGAAAAAGA  493

seq1  TACACATGGGAGAAAGAGCTATGTTTCAAACAATTCTAACTTAAATGTTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGGGAGAAAGAGCTATGTTTCAAACAATTCTAACTTAAATGTTT  543

seq1  CTTAGTTCCATCTGATTGTTTTCCAGATATGAACCAAACTTATTTGAGGT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTCCATCTGATTGTTTTCCAGATATGAACCAAACTTATTTGAGGT  593

seq1  TACCATGTTGAATACCTCCTTCAATATCGAATCAGGTCTATTCACAATTC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGTTGAATACCTCCTTCAATATCGAATCAGGTCTATTCACAATTC  643

seq1  AGCAAGGGACTGGAGCTTCGCTACTTCCTGCTAAATACTTCAGTCACTAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGGACTGGAGCTTCGCTACTTCCTGCTAAATACTTCAGTCACTAG  693

seq1  GTAGTATCATTGGTCCAGGGACTTTCCATATTCTGTGTGATCTTTAGGAC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATCATTGGTCCAGGGACTTTCCATATTCTGTGTGATCTTTAGGAC  743

seq1  TATCTAGGGCAGTAGGTCTCAGTCTTTTTAAGTTATGTACTCTGTTGAAC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGGGCAGTAGGTCTCAGTCTTTTTAAGTTATGTACTCTGTTGAAC  793

seq1  CAATTAACACAGAAATACCAGGAATGAAAAAGAATGAAAGTGGAGCTGTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAACACAGAAATACCAGGAATGAAAAAGAATGAAAGTGGAGCTGTT  843

seq1  GGCTTTGAGTAGAGCATGGGGATCTAGACTGTTAGAAGAAAGCTATTCCC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGAGTAGAGCATGGGGATCTAGACTGTTAGAAGAAAGCTATTCCC  893

seq1  TGTTCTAATTCCATTTTTGTTGCTTTGATAAAATACCATGGCAAACAACA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAATTCCATTTTTGTTGCTTTGATAAAATACCATGGCAAACAACA  943

seq1  ATGAAGGGGAGAAGGAGGCCTATTTTGCCTGCAATTCAGGTTGTTGTTTT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGGGAGAAGGAGGCCTATTTTGCCTGCAATTCAGGTTGTTGTTTT  993

seq1  TATTATGGAGAAAGTAAGGTAAGAACTTCCAGCAGCTAGATCCATCCCCT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGGAGAAAGTAAGGTAAGAACTTCCAGCAGCTAGATCCATCCCCT  1043

seq1  CTGTGGTCAAGCACAGAGAAATGAATATGCCCTCACTCACTTGTTTGCTC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTCAAGCACAGAGAAATGAATATGCCCTCACTCACTTGTTTGCTC  1093

seq1  ATTTGGGAAAAGCTGCTTCTCTATTCTAAGTTATGTCAGGTTGACAACTA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGAAAAGCTGCTTCTCTATTCTAAGTTATGTCAGGTTGACAACTA  1143

seq1  AAGCTACTCATTTTGTCTCTTAATGGACTTGAATTC  1175
      ||||||||||||||||||||||||||||||||||||
seq2  AAGCTACTCATTTTGTCTCTTAATGGACTTGAATTC  1179


seq1: chr5_49122692_49123371
seq2: B6Ng01-190D22.g_67_746

seq1  GAATTCTTCTCAAGTAAGCCTGGACATTAATTATGATTCTAAAGTTCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCAAGTAAGCCTGGACATTAATTATGATTCTAAAGTTCCCA  50

seq1  AGTGATCCTTCTGAATGTCTGGTTTGAGTATCCTTGTATGTCTGCCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCCTTCTGAATGTCTGGTTTGAGTATCCTTGTATGTCTGCCTCAG  100

seq1  AACCATTTTACATTCTAAAATTTGCTCTCCCCTTGTTCCCTTGATATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTTACATTCTAAAATTTGCTCTCCCCTTGTTCCCTTGATATATA  150

seq1  TAACAATGCAATTTAAAAATACTTTTCACTAGAAAGACAGCATTTTCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATGCAATTTAAAAATACTTTTCACTAGAAAGACAGCATTTTCAAC  200

seq1  AATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGA  250

seq1  TCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAAC  300

seq1  TTCACTTAAAACCAGATACACTGAAACTTATAGAGGAGAAAGTGGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTAAAACCAGATACACTGAAACTTATAGAGGAGAAAGTGGGGAAA  350

seq1  AGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAAT  400

seq1  GGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCC  450

seq1  AAAGTTTCTGCAAGGCAAAAGATACCGTCAATAAGACAAAAAGACCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCTGCAAGGCAAAAGATACCGTCAATAAGACAAAAAGACCACCA  500

seq1  ACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAAT  550

seq1  ATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATA  600

seq1  ACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTCTCACCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTCTCACCTGAG  650

seq1  GAATACCGAATGGCAGAGAAGCACCTGAAA  680
      ||||||||||||||||||||||||||||||
seq2  GAATACCGAATGGCAGAGAAGCACCTGAAA  680


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