BAC Information

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BAC

Clone NameB6Ng01-190E01
Chromosome5 (Build37)
Map Location 51,689,163 - 51,690,291
singlet/doubletsinglet
Overlap genenone
Upstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
Downstream genePpargc1a, Dhx15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190E01.bB6Ng01-190E01.g
ACCGA014055GA014056
length8451,123
definitionB6Ng01-190E01.b B6Ng01-190E01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctacataacattcaggaaagatatatttaacctacacatatggt
agcttatccacagcaccccaagaaaccagagtcattgttaaacaatacat
gattcacttgagattaaattcttaataaaaaagttatttcttttagaaaa
gattcagaataaaatgttccctatccttacactgtatagttgatgagaca
tgggtggctggaagaggagggaggtagaagattggctatagtgagagatg
ggaggtaatccattgccgatggggccattttaaatataaggaccactcag
aactttttaagatgtattgtagggggtgttatgatttgattgtaaaatgt
cccataggggctcatgtgtgtttgaagatttggtccctaggtataaagcc
acttggggacagtgctaaatagttttatgtcaatttgacacaaactaaaa
ttatatgagaggtgcaaacctcaattaataaaatgcctccacaagattag
gctgaaagcaagcctatagggcattttcttagtaatcaatagagaaggcc
cagcctattgtgagtggttccatccctggactgatggttctgggttctct
aagaaaacagatgagcaaaacaggcagctcaagccaatcagtagcacctc
tccatggcctttgaattagctcttgcctacaggttcctgccctgcttgaa
attctgccctcattgttttgattacgaatagttatatggaattatatggg
tgaggggaaagaagcccctttcctctcccagtttgcttttgggtataaag
cttcagcatatcacttggtaaccctaaagcaagactcgaaagttt

gaattcataactttcaaagcttgttcagaagtatatactgcccagcagta
agcttagctttgaacatgcactctcctcaggtaagattcaagctatgggt
tttataactttggaagtaaaggtgttgactgtggacaaggaattcaaaac
tgaaatgctcatgtatagatggtgtgaaaagaggcttagagatggatacc
agccctctctctgtattatgatatctgtgagcatcataacgcactatatc
taggacctctctggactcagtgaaggtgaagaggtgagatttaaatattt
atcctttaaaaaaattgtcaagtgtttctaatatactctgaatactattg
aattggatttgtcttgaattagacatgtgatacctgttcgtctcctggat
gacttcaggaagcccgcattgtcctcggaggcagtgcaggtaaatcgtca
ggggcatgggcagaggaagaacactataaaatggacagtacttgccaatc
tttagggacatctgccttattgtgttcatgccaactgcggctagatggat
gaatgtaggcccagtgttagagatcttcattattataaaaatgtatttct
aatttatgtgtttgctggcacatatgtttcaaatgtctgcctatgccagc
gaaagctggaagagagtaacagatgccctggaatatcacaggcggttggg
aactgccttctgggtgctaggacctaaaaccaggtcctctgcaaaaacag
caagtactcttcgccactgaacctcctctccacccaccctctttttaaat
ctttagaaaacagaactcagtatttttatctagatatgatgcccttttaa
gcccgtactctcggctcctaggaggttgaggcaggaggattgttatgatt
tcaagtcctgctgaggttatgtagtaaattccatttttcacccaactgag
ctgtggtgtgagcccttgttaataataataaagaaaaaaaagtaaaagtg
tttaaaagattttgtatacttttttttgaatttatattggcttggtattt
ggataagactacctcgaatagccacatgtggtggcttactcaactctagt
caatagtttggtccctggctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51689163_51690291
seq2: B6Ng01-190E01.g_66_1188

seq1  GAATTCATAACTTTCAAAGCTTGTTCAGAAGTATATACTGCCCAGCAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACTTTCAAAGCTTGTTCAGAAGTATATACTGCCCAGCAGTA  50

seq1  AGCTTAGCTTTGAACATGCACTCTCCTCAGGTAAGATTCAAGCTATGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGCTTTGAACATGCACTCTCCTCAGGTAAGATTCAAGCTATGGGT  100

seq1  TTTATAACTTTGGAAGTAAAGGTGTTGACTGTGGACAAGGAATTCAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACTTTGGAAGTAAAGGTGTTGACTGTGGACAAGGAATTCAAAAC  150

seq1  TGAAATGCTCATGTATAGATGGTGTGAAAAGAGGCTTAGAGATGGATACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGCTCATGTATAGATGGTGTGAAAAGAGGCTTAGAGATGGATACC  200

seq1  AGCCCTCTCTCTGTATTATGATATCTGTGAGCATCATAACGCACTATATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCTCTCTGTATTATGATATCTGTGAGCATCATAACGCACTATATC  250

seq1  TAGGACCTCTCTGGACTCAGTGAAGGTGAAGAGGTGAGATTTAAATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCTCTCTGGACTCAGTGAAGGTGAAGAGGTGAGATTTAAATATTT  300

seq1  ATCCTTTAAAAAAATTGTCAAGTGTTTCTAATATACTCTGAATACTATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTAAAAAAATTGTCAAGTGTTTCTAATATACTCTGAATACTATTG  350

seq1  AATTGGATTTGTCTTGAATTAGACATGTGATACCTGTTCGTCTCCTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGATTTGTCTTGAATTAGACATGTGATACCTGTTCGTCTCCTGGAT  400

seq1  GACTTCAGGAAGCCCGCATTGTCCTCGGAGGCAGTGCAGGTAAATCGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGGAAGCCCGCATTGTCCTCGGAGGCAGTGCAGGTAAATCGTCA  450

seq1  GGGGCATGGGCAGAGGAAGAACACTATAAAATGGACAGTACTTGCCAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATGGGCAGAGGAAGAACACTATAAAATGGACAGTACTTGCCAATC  500

seq1  TTTAGGGACATCTGCCTTATTGTGTTCATGCCAACTGCGGCTAGATGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGACATCTGCCTTATTGTGTTCATGCCAACTGCGGCTAGATGGAT  550

seq1  GAATGTAGGCCCAGTGTTAGAGATCTTCATTATTATAAAAATGTATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAGGCCCAGTGTTAGAGATCTTCATTATTATAAAAATGTATTTCT  600

seq1  AATTTATGTGTTTGCTGGCACATATGTTTCAAATGTCTGCCTATGCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGTGTTTGCTGGCACATATGTTTCAAATGTCTGCCTATGCCAGC  650

seq1  GAAAGCTGGAAGAGAGTAACAGATGCCCTGGAATATCACAGGCGGTTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTGGAAGAGAGTAACAGATGCCCTGGAATATCACAGGCGGTTGGG  700

seq1  AACTGCCTTCTGGGTGCTAGGACCTAAAACCAGGTCCTCTGCAAAAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCTTCTGGGTGCTAGGACCTAAAACCAGGTCCTCTGCAAAAACAG  750

seq1  CAAGTACTCTTCGCCACTGAACCTCCTCTCCACCCACCCTCTTTTTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACTCTTCGCCACTGAACCTCCTCTCCACCCACCCTCTTTTTAAAT  800

seq1  CTTTAGAAAACAGAACTCAGTATTTTTATCTAGATATGATG-CCTTTTAA  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTTAGAAAACAGAACTCAGTATTTTTATCTAGATATGATGCCCTTTTAA  850

seq1  GCCCGTACTCTCGGCTCCTAGGAGGTTGAGGCAGGAGGATTGTTATGATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTACTCTCGGCTCCTAGGAGGTTGAGGCAGGAGGATTGTTATGATT  900

seq1  TCAAGTCCTGCTGAGGTTATGTAGTAAATTCCA-TTTTCACCCAACTGAG  948
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCAAGTCCTGCTGAGGTTATGTAGTAAATTCCATTTTTCACCCAACTGAG  950

seq1  CTGTGGTGTGAGCCCTTG-TAAT-ATAATAAAGAAAAAAAAAGTAAAAGT  996
      |||||||||||||||||| |||| ||||||||| ||||||||||||||||
seq2  CTGTGGTGTGAGCCCTTGTTAATAATAATAAAG-AAAAAAAAGTAAAAGT  999

seq1  GTTTAAAAGATTTTGTATAATTTTTTTTGAAATTTTAATATTGGCTTGGT  1046
      ||||||||||||||||||| |||||||||||   || |||||||||||||
seq2  GTTTAAAAGATTTTGTATACTTTTTTTTGAA---TTTATATTGGCTTGGT  1046

seq1  ATTTTGATAAGACTACCCTCCAAATAAGCCACATGT-GTGGCTTACTCCA  1095
      |||| |||||||||| |||| ||   |||||||||| |||||||||| ||
seq2  ATTTGGATAAGACTA-CCTCGAA--TAGCCACATGTGGTGGCTTACT-CA  1092

seq1  ACCTTCTAGTCCATAGTTTGGGACTTTGGCTCTA  1129
      ||  ||||||| ||||||| || |  ||||||||
seq2  AC--TCTAGTCAATAGTTT-GGTCCCTGGCTCTA  1123


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