BAC Information

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BAC

Clone NameB6Ng01-190H04
Chromosome5 (Build37)
Map Location 77,436,804 - 77,622,048
singlet/doubletdoublet
Overlap geneArl9, 1700023E05Rik, Hod
Upstream geneGabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72
Downstream geneSpink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227, LOC100039398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190H04.bB6Ng01-190H04.g
ACCGA014200GA014201
length1,121951
definitionB6Ng01-190H04.b B6Ng01-190H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,436,804 - 77,437,925)(77,621,097 - 77,622,048)
sequence
gaattcaacacaataattgagcggcttctatgtatatatatatatattaa
aaaagggtcttgttttagatcggttatacttaaactgaatttatttgatg
catgcattaaaagtaataaacacccaaggagaaacttgaaacttgtgccc
tgttcttaggagtgtaggctattaaggggaaaaagattgaatttgtttgc
tgtagcaagtctcctttatttgtatatgccccaaaggaataaaatcagag
agccaatctatttttatacatctgtggtcatggcagcattattgttattc
caacagccatgggttagaagttatcagtgtctatctgctgatgaatgcat
aacaaatcgtggtgtctccatacagcccattcctttaactttcagaggga
agggggttctactgcatgcaaccacacagaggaacctagcatatgctatc
ctcagtgaataagctagccacagaaggacaaatgctatgtgattctgctt
atccagagtcagcaaatctgtcgagttcccaagtggaactgtggctgtca
aggactgaaggagggaggaaggcggagttagcttagtatagatagagctt
tagtttatcgagataaagagtttggggaatttttgatagtaatggtttaa
aacactaaaatggtaaatcttatgggttcttctacatgactatttcttct
tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc
ttcttcttcttcttcttcttcttcttctcctcttcctcctcctccccctc
cttctcctcctttcttcctcttccttttctcctctttctcctcccttctt
cttcttcttcttcttcttcaactactactactactattactactactact
actactactcctcacacacacacaccctttagatatccaaacactgaaca
ctaaactcttcttctcagttgctatgtttgtcaatcaggagagctcagtt
gcctgccttttccctgtgttcttctatgggtgggatgtgtcacggaagta
aatagtactatgatcgatgcctcctcctccttcattagcagggatctggg
atggacgtacagaagaaggct
gaattccttatctcttagctggagcttcttccttgacattcttccaagcc
aaaagagcgagaatccaaaacgagagccagctcaagaggctgagccccca
aacggtgcccctcaaaggtccaatttctataaaggaagcctctagctcct
cccctacacctctggcaagctgagccctgtcaccatcatggtaggaggtt
ccaagccaagtcaaagagggccgaaccatttcacctttatggtgggacag
ttcaaggccagccagctgactttgccttggatcatagagcaaagaccaca
agacttctcctaagcaatttgccttaaaatagtcgggaactttctattct
ttagctttttttatctaaggaggcttttagaggcagatccaaactgcatc
tctacaggacacacccaactgcatcaatatctttctaggccttcatgttt
tgcttgccagtaggttttctatgaatcacaatctcatatcctgcaacttc
catctgttccccacaccaaatactttgatgttgcttaaagaataatctag
actttgttctcttcctactcacaggttggactacatgacctctgtgatag
aaagcagagcagaagtcacgcagggagaagcccttcacagagggtaggca
gctaccgctggcacccaagggaaggcctttgaaagggctaaagcaagcat
caaagaatagcaacactggcatctgtgaagcacaaccacttccatcccgc
cctttcctctcttcctgcaactaaagccagaagtttgattggtgctgaca
gtggtgggagagggagggctcttaggaccagggaggcagagacagtcatg
aggtccctggcatgagggagcatattcatattttcaggattctttaagaa
taaatcacattttaaatattagtgtgtgtgtgtgtgtgtgtgtgtgtgtg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_77436804_77437925
seq2: B6Ng01-190H04.b_40_1160

seq1  GAATTCAACACAATAATTGAGCGGCTTCTATGTATATATATATATATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACAATAATTGAGCGGCTTCTATGTATATATATATATATTAA  50

seq1  AAAAGGGTCTTGTTTTAGATCGGTTATACTTAAACTGAATTTATTTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGTCTTGTTTTAGATCGGTTATACTTAAACTGAATTTATTTGATG  100

seq1  CATGCATTAAAAGTAATAAACACCCAAGGAGAAACTTGAAACTTGTGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATTAAAAGTAATAAACACCCAAGGAGAAACTTGAAACTTGTGCCC  150

seq1  TGTTCTTAGGAGTGTAGGCTATTAAGGGGAAAAAGATTGAATTTGTTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTAGGAGTGTAGGCTATTAAGGGGAAAAAGATTGAATTTGTTTGC  200

seq1  TGTAGCAAGTCTCCTTTATTTGTATATGCCCCAAAGGAATAAAATCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAAGTCTCCTTTATTTGTATATGCCCCAAAGGAATAAAATCAGAG  250

seq1  AGCCAATCTATTTTTATACATCTGTGGTCATGGCAGCATTATTGTTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATCTATTTTTATACATCTGTGGTCATGGCAGCATTATTGTTATTC  300

seq1  CAACAGCCATGGGTTAGAAGTTATCAGTGTCTATCTGCTGATGAATGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCCATGGGTTAGAAGTTATCAGTGTCTATCTGCTGATGAATGCAT  350

seq1  AACAAATCGTGGTGTCTCCATACAGCCCATTCCTTTAACTTTCAGAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCGTGGTGTCTCCATACAGCCCATTCCTTTAACTTTCAGAGGGA  400

seq1  AGGGGGTTCTACTGCATGCAACCACACAGAGGAACCTAGCATATGCTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTTCTACTGCATGCAACCACACAGAGGAACCTAGCATATGCTATC  450

seq1  CTCAGTGAATAAGCTAGCCACAGAAGGACAAATGCTATGTGATTCTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGAATAAGCTAGCCACAGAAGGACAAATGCTATGTGATTCTGCTT  500

seq1  ATCCAGAGTCAGCAAATCTGTCGAGTTCCCAAGTGGAACTGTGGCTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAGTCAGCAAATCTGTCGAGTTCCCAAGTGGAACTGTGGCTGTCA  550

seq1  AGGACTGAAGGAGGGAGGAAGGCGGAGTTAGCTTAGTATAGATAGAGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGAAGGAGGGAGGAAGGCGGAGTTAGCTTAGTATAGATAGAGCTT  600

seq1  TAGTTTATCGAGATAAAGAGTTTGGGGAATTTTTGATAGTAATGGTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTATCGAGATAAAGAGTTTGGGGAATTTTTGATAGTAATGGTTTAA  650

seq1  AACACTAAAATGGTAAATCTTATGGGTTCTTCTACATGACTATTTCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAAAATGGTAAATCTTATGGGTTCTTCTACATGACTATTTCTTCT  700

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  750

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTCTTCCTCCTCCTCCCCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTCTTCCTCCTCCTCCCCCTC  800

seq1  CTTCTCCTCCTTTCTTCCTCTTCCTTTTCTCCTCTTTCTCCT-CCTTCTT  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTCTCCTCCTTTCTTCCTCTTCCTTTTCTCCTCTTTCTCCTCCCTTCTT  850

seq1  CTTCTTCTTCTTCTTCTTCAACTACTACTACTACTATTACTACTACTACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTTCTTCTTCAACTACTACTACTACTATTACTACTACTACT  900

seq1  ACTACTACTCCTCACACACACACACCCTTTAGATATCCAAACACTGAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTACTCCTCACACACACACACCCTTTAGATATCCAAACACTGAACA  950

seq1  CTAAAACTCTTC-TCTCAGTTGCTATGTTTGTCAATCAAGGAGAGCTCAG  998
      || ||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  CT-AAACTCTTCTTCTCAGTTGCTATGTTTGTCAATC-AGGAGAGCTCAG  998

seq1  TTGCCTGCCTTTTCCCTGTG-TCTTCTATGGGTGGGATGTTGTTCACGGA  1047
      |||||||||||||||||||| |||||||||||||||||||   |||||||
seq2  TTGCCTGCCTTTTCCCTGTGTTCTTCTATGGGTGGGATGT--GTCACGGA  1046

seq1  AGTAAAATAGGTACTTATGATCGATG-CTC--TCTCCTACATTAGCAGGA  1094
      ||| ||||| |||| ||||||||||| |||   ||||| |||||||||| 
seq2  AGT-AAATA-GTAC-TATGATCGATGCCTCCTCCTCCTTCATTAGCAGGG  1093

seq1  ACCT-GGATTGACGTACAGAAGAGAGGCT  1122
      | || |||| ||||||||||||| |||||
seq2  ATCTGGGATGGACGTACAGAAGA-AGGCT  1121

seq1: chr5_77621097_77622048
seq2: B6Ng01-190H04.g_65_1015 (reverse)

seq1  ACACACACACACACACACACACACACACACTAATATTTTAAAATGTGATT  50
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACACACACACACACACACACACACACACACTAATA-TTTAAAATGTGATT  49

seq1  TATTCTTAAAGAATCCTGAAAATATGAATATGCTCCCTCATGCCAGGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTAAAGAATCCTGAAAATATGAATATGCTCCCTCATGCCAGGGAC  99

seq1  CTCATGACTGTCTCTGCCTCCCTGGTCCTAAGAGCCCTCCCTCTCCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGACTGTCTCTGCCTCCCTGGTCCTAAGAGCCCTCCCTCTCCCACC  149

seq1  ACTGTCAGCACCAATCAAACTTCTGGCTTTAGTTGCAGGAAGAGAGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAGCACCAATCAAACTTCTGGCTTTAGTTGCAGGAAGAGAGGAAA  199

seq1  GGGCGGGATGGAAGTGGTTGTGCTTCACAGATGCCAGTGTTGCTATTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGGATGGAAGTGGTTGTGCTTCACAGATGCCAGTGTTGCTATTCTT  249

seq1  TGATGCTTGCTTTAGCCCTTTCAAAGGCCTTCCCTTGGGTGCCAGCGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTGCTTTAGCCCTTTCAAAGGCCTTCCCTTGGGTGCCAGCGGTA  299

seq1  GCTGCCTACCCTCTGTGAAGGGCTTCTCCCTGCGTGACTTCTGCTCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTACCCTCTGTGAAGGGCTTCTCCCTGCGTGACTTCTGCTCTGCT  349

seq1  TTCTATCACAGAGGTCATGTAGTCCAACCTGTGAGTAGGAAGAGAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCACAGAGGTCATGTAGTCCAACCTGTGAGTAGGAAGAGAACAAA  399

seq1  GTCTAGATTATTCTTTAAGCAACATCAAAGTATTTGGTGTGGGGAACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGATTATTCTTTAAGCAACATCAAAGTATTTGGTGTGGGGAACAGA  449

seq1  TGGAAGTTGCAGGATATGAGATTGTGATTCATAGAAAACCTACTGGCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTGCAGGATATGAGATTGTGATTCATAGAAAACCTACTGGCAAG  499

seq1  CAAAACATGAAGGCCTAGAAAGATATTGATGCAGTTGGGTGTGTCCTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATGAAGGCCTAGAAAGATATTGATGCAGTTGGGTGTGTCCTGTA  549

seq1  GAGATGCAGTTTGGATCTGCCTCTAAAAGCCTCCTTAGATAAAAAAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCAGTTTGGATCTGCCTCTAAAAGCCTCCTTAGATAAAAAAAGCT  599

seq1  AAAGAATAGAAAGTTCCCGACTATTTTAAGGCAAATTGCTTAGGAGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAGAAAGTTCCCGACTATTTTAAGGCAAATTGCTTAGGAGAAGT  649

seq1  CTTGTGGTCTTTGCTCTATGATCCAAGGCAAAGTCAGCTGGCTGGCCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGTCTTTGCTCTATGATCCAAGGCAAAGTCAGCTGGCTGGCCTTG  699

seq1  AACTGTCCCACCATAAAGGTGAAATGGTTCGGCCCTCTTTGACTTGGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCCCACCATAAAGGTGAAATGGTTCGGCCCTCTTTGACTTGGCTT  749

seq1  GGAACCTCCTACCATGATGGTGACAGGGCTCAGCTTGCCAGAGGTGTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTCCTACCATGATGGTGACAGGGCTCAGCTTGCCAGAGGTGTAGG  799

seq1  GGAGGAGCTAGAGGCTTCCTTTATAGAAATTGGACCTTTGAGGGGCACCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCTAGAGGCTTCCTTTATAGAAATTGGACCTTTGAGGGGCACCG  849

seq1  TTTGGGGGCTCAGCCTCTTGAGCTGGCTCTCGTTTTGGATTCTCGCTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGGCTCAGCCTCTTGAGCTGGCTCTCGTTTTGGATTCTCGCTCTT  899

seq1  TTGGCTTGGAAGAATGTCAAGGAAGAAGCTCCAGCTAAGAGATAAGGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTGGAAGAATGTCAAGGAAGAAGCTCCAGCTAAGAGATAAGGAAT  949

seq1  TC  952
      ||
seq2  TC  951