BAC Information

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BAC

Clone NameB6Ng01-190I12
Chromosome4 (Build37)5 (Build37)
Map Location 81,561,521 - 81,561,98129,790,991 - 29,791,969
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneD4Bwg0951e, Mpdz, LOC100040131, LOC100040144, EG668895
Downstream geneLOC100040164, EG545641, Nfib, Zdhhc21, Cer1, Frem1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190I12.bB6Ng01-190I12.g
ACCGA014264GA014265
length7571,033
definitionB6Ng01-190I12.b B6Ng01-190I12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,561,521 - 81,561,981)(29,790,991 - 29,791,969)
sequence
gaattctctacattgatttccataatgcctgtaccagtctgcaatcccac
caacagtgaataaggactccttttccatcacactgcacccagcatttgtt
gtcaattgctttgttgatctttgtcattctgactggggtaaaatctcaaa
gctgttttgatttgcatttccctaattgctaaggaatatgaacattgttt
tgagatattttataacccttttttttaatttcagaactctctgttcatgt
cccagccatgtttccctccctttttaaaaaaaaacaaatagtttgttttt
tgactctgtgtttgaaggatatatatatatatatgtatatatgtatatat
atatatatatgtatatatatatatatatatatatatatatatatatatat
atatatatataacacagtgaaaaaaaacacattctgttttttttttaaaa
aagagggagaaacatgtgggagacatacacagagagcgcagagaaaaaaa
aaaaggggtataatatatctcaaaacagtgtgtattttctctcgaacaga
gagagatgtacaactccacatctctgagatattcccccacagagagagag
agagagatacagagagttagagaaaacacgcggtgtggagagtgagataa
agagagtgtatacactctgtgtgggagagcacacagagagacacacacta
tatataaatatatagagatccgcgcgcgtcctctctctagagagtgtggt
gtgtgcg

gaattcaacacacagctacacagaacctctaaggacaagaaaggagcttc
catttttggttcacagtggatctggctgaactgtacagcatgcatggttg
gaaaagagaacattgagaaacaacatattctgttactggtaactggtctt
ttttaaaaagattacacacacacacacacacacacacatacacagacaaa
cacacacacacacacacacacacacacacacacacacacacacagagaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
gttgtgaaccaccatgtagttgatgggaattgaactcaggacctctggaa
gagcagccagtgctcttaactgctgagccatctctccagcactggatcat
tttttattgtggtaaattttatatatacttgtcttttactgtgagtggtg
ccatatggcacccctactctctgtacttccactttctaaacatcaactct
gggatctgcaactcatgttgaacggtccaatgccctctgccttactgctg
tggtcctgcctgtctcaggatttgacccctgtaacatttttgttttgttt
tgctttttatttatttttttattttttttaagatttatttatttattata
tgtaagtacactgtagctgtcttcagacacaccagaagaggaagtcagat
cttgttatggatggttgtgagccaccatgtggttgcagggatttgaactc
aggaccttcggaagagcagtcgggtgctcttacctgctgagccatctcac
cagcccttgttttgctttttaattttatttatttgtttgtttgtttttgt
ttttttgaagataaggtttcctggctgttctggaacttgcacctgtagac
cacattggcccttgaaagcctcaaaactgcctgcctcttgccctcccaaa
tgtgccagggattaaaggtggtccacttaccaatccctggcaaaggcctt
gaaaggtttggtttggtttggcctttaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_81561521_81561981
seq2: B6Ng01-190I12.b_387_761

seq1  TATATACGTATATATATATGTATATATATATACATATATATATGTATATA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TATGTATACACACACACACATATATATATATACATATATATATGTGTGTG  100
                                        ||||||||      | 
seq2  ----------------------------------TATATATA------TA  10

seq1  TATATATATATATATATATATATATATACATATATATATATATATATATA  150
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  TATATATGTATATATATATATATATATATATATATATATATATATATATA  60

seq1  TATATATAATTATTAGTTACAGTAAATGAGTCAATGGTTTAGAGGTTATG  200
      |||||||||         ||||| ||  |   ||      | |  || ||
seq2  TATATATAA--------CACAGTGAAAAA---AA------ACACATTCTG  93

seq1  TACCCTTTGCCAAGATAAAGGACCTATTTGATTCTATTTCTATAAAACAT  250
      |    |||   || |  | |||   |  ||          |   | ||||
seq2  TTTTTTTTTTAAAAAAGAGGGAGAAACATG----------TGGGAGACAT  133

seq1  ATTCAGATA-AGGAAATAAATTATAAAAG------AATAT----------  283
      |  |||| |  | | | |||  | |||||      |||||          
seq2  ACACAGAGAGCGCAGAGAAAAAAAAAAAGGGGTATAATATATCTCAAAAC  183

seq1  ----GGAATGCTCTTTTG----TAGGTTGAAATACAA--GAACAT---TG  320
           | ||  ||| | |     ||   ||  |||||    ||||   ||
seq2  AGTGTGTATTTTCTCTCGAACAGAGAGAGATGTACAACTCCACATCTCTG  233

seq1  GGCACATTCCATAAAATTCTAGAAAAATTTTTATGTAGCTGCTTTATTTA  370
       | | |||||   | |    ||| | |     ||  ||  |  |||   |
seq2  AG-ATATTCCCCCACA-GAGAGAGAGAGAGAGATACAG-AGAGTTAGAGA  280

seq1  AATGACGAGGAGAAATGAATTCAGCTAAA--------ATCCAAAAGGT--  410
      ||  ||| || |    | | | || ||||        || ||    ||  
seq2  AAACACGCGGTGTGGAG-AGTGAGATAAAGAGAGTGTATACACTCTGTGT  329

seq1  -GGTGATCTCATTGGAAAGCCTCCCACGCATGTATCTATAAATATATAGA  459
       || || | ||   || || | | |||     ||| ||||||||||||||
seq2  GGGAGAGCACA-CAGAGAGACACACAC-----TATATATAAATATATAGA  373

seq1  GA  461
      ||
seq2  GA  375


seq1: chr5_29790991_29791969
seq2: B6Ng01-190I12.g_65_1056 (reverse)

seq1  TGCCAGGGA-TGGT-AGTGGA-CACCTTTAAT-CCTGG--CATTTGGGAG  44
      ||||||||| |||| |||||| |||||||||| |||||  ||||||||||
seq2  TGCCAGGGATTGGTAAGTGGACCACCTTTAATCCCTGGCACATTTGGGAG  50

seq1  G--CAGAGGCAGGCAGTTTTGAG--CTTCAA-GGCCAATGTGGTCTACA-  88
      |   |||||||||||||||||||   ||||| ||||||||||||||||| 
seq2  GGCAAGAGGCAGGCAGTTTTGAGGCTTTCAAGGGCCAATGTGGTCTACAG  100

seq1  GTGCAAGTTCCAGAACAGCCAGGAAACCTTATC-TCAAAAAAACAAAAAC  137
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTGCAAGTTCCAGAACAGCCAGGAAACCTTATCTTCAAAAAAACAAAAAC  150

seq1  AAACAAACAAATAAATAAAATTAAAAAGCAAAACAAGGGCTGGTGAGATG  187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAATAAATAAAATTAAAAAGCAAAACAAGGGCTGGTGAGATG  200

seq1  GCTCAGCAGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCTGAGTTCAA  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCAGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCTGAGTTCAA  250

seq1  ATCCCTGCAACCACATGGTGGCTCACAACCATCCATAACAAGATCTGACT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGCAACCACATGGTGGCTCACAACCATCCATAACAAGATCTGACT  300

seq1  TCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAA  350

seq1  ATAAATAAATCTTAAAAAAAATAAAAAAATAAATAAAAAGCAAAACAAAA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATCTTAAAAAAAATAAAAAAATAAATAAAAAGCAAAACAAAA  400

seq1  CAAAAATGTTACAGGGGTCAAATCCTGAGACAGGCAGGACCACAGCAGTA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGTTACAGGGGTCAAATCCTGAGACAGGCAGGACCACAGCAGTA  450

seq1  AGGCAGAGGGCATTGGACCGTTCAACATGAGTTGCAGATCCCAGAGTTGA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGGCATTGGACCGTTCAACATGAGTTGCAGATCCCAGAGTTGA  500

seq1  TGTTTAGAAAGTGGAAGTACAGAGAGTAGGGGTGCCATATGGCACCACTC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGAAAGTGGAAGTACAGAGAGTAGGGGTGCCATATGGCACCACTC  550

seq1  ACAGTAAAAGACAAGTATATATAAAATTTACCACAATAAAAAATGATCCA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAAAGACAAGTATATATAAAATTTACCACAATAAAAAATGATCCA  600

seq1  GTGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGGCTGCTCTTCCAGAG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGGCTGCTCTTCCAGAG  650

seq1  GTCCTGAGTTCAATTCCCATCAACTACATGGTGGTTCACAACTCTCTCTC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAGTTCAATTCCCATCAACTACATGGTGGTTCACAACTCTCTCTC  700

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTG  750

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTCTG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTCTG  800

seq1  TGTATGTGTGTGTGTGTGTGTGTGTGTGTAATCTTTTTAAAAAAGACCAG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTGTGTGTGTGTGTGTGTGTGTAATCTTTTTAAAAAAGACCAG  850

seq1  TTACCAGTAACAGAATATGTTGTTTCTCAATGTTCTCTTTTCCAACCATG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGTAACAGAATATGTTGTTTCTCAATGTTCTCTTTTCCAACCATG  900

seq1  CATGCTGTACAGTTCAGCCAGATCCACTGTGAACCAAAAATGGAAGCTCC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGTACAGTTCAGCCAGATCCACTGTGAACCAAAAATGGAAGCTCC  950

seq1  TTTCTTGTCCTTAGAGGTTCTGTGTAGCTGTGTGTTGAATTC  979
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTCCTTAGAGGTTCTGTGTAGCTGTGTGTTGAATTC  992


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