BAC Information

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BAC

Clone NameB6Ng01-190J02
Chromosome5 (Build37)
Map Location 37,624,968 - 37,805,044
singlet/doubletdoublet
Overlap geneCrmp1, Evc, Evc2
Upstream geneSorcs2, Grpel1, Ccdc96, Tbc1d14, D5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936
Downstream geneLOC100040355, LOC100040988, Stk32b, Cytl1, Msx1, Stx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190J02.bB6Ng01-190J02.g
ACCGA014292GA014293
length9451,113
definitionB6Ng01-190J02.b B6Ng01-190J02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,624,968 - 37,625,905)(37,803,937 - 37,805,044)
sequence
gaattcatgtgcacatgaatgatcctccttgggaagtcccaggtcctaaa
ataggttccatccccagcaccatatacactgggtgtggtgaaggactgtg
atcctagcactccagatcggggaggcaggaggagcagatgtccaacttac
cttcagtaagtttgagactagtctgggatatacagatcttgtctcaaaaa
caaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaa
caaaacatgagttaagccaagcatgttgatacatgcctgcagtcctctca
cctagtacttgggaggcagaggcaggaggatgcagagatgaaggctagtc
tgggctatgtgaaagctgtcttatcaaaatgtgcatggagcattttgtgg
tgagactcatctgtgagtctggttcatcatccctgcagaggatgggaact
cgggtctcacacaggactgctttgtgctcccttggctcagcaggtaattg
agtgaggtttatcatttcaggggtttcttctcctataagctctgagccga
ttaaaagagactaatggcccttgtttgtttccaagctgagatcctaggtc
tggaagatgaaacttctccctccctccctccttctctccctccctcccct
ctctccctcccttccctcttctctttccttctttcctccctttctccttt
cctccttgacttccttcctccttcctcatttcctccctcactcccttcct
cctttctttctttactccctccgtccctccctcctccctcccctcccttt
cttcttttgctttccttccttcctttctccctcccccctcctctcctttc
ttcctcttttcccttctggccttttttcgtgagcaggggacaatccaata
gagcacaaagtgtccacttgtaatcagttttagggaaggagaggg
gaattctctgtatgtggtgaaatggccacatgagtggtttcctccccttt
aacctagtaagtaagtgagttttgtaaactaatgtcctcaggttaaattc
ctagaaattccttatagccctggttaaacaaacaaacaaacaaacaaaca
aacaaaacaaaaaacccacctcagtcagcctggccaggatagattatatt
attctaaaagatggatgagttatgttagttacaattttgcacataaaggc
tgcagctgttctgtctggtaccacctgggtctcctgttggtgtccaggtt
atctgagaaccatacagggtaaatgggggtctttgctccagcatccagga
agatatgagtagaagaagggtgatgttctgagtgagaatggctctcatag
gctcatgtgtctgagtacttgctccctagctggtggaagtgttggcaaaa
gattaggaggaagggcaggctttggggtttctaaagactcacactatttc
tagtatgcctcagtttcctgcttgtgaaacaagatgttccctctgccatg
cctttactctgtcatcatgtgctccaaccctttgaaagagctcagttaag
tgcttccttttgtaagttgccttggtcatgggtctctgcgcatgcctgca
cacccagggcttcagtgaatgagagctttctcctcactggaacatgttac
tgtaattcatgggatttaaaaaagaaaaatccacacatactctcaaccat
caccagggaagctgcgttttgctgtgaatggtgatcaactcagagaccca
caagctggcactgtaagagagcctttagaatgctgcaggctaaatggggt
gtctgaatcacacccatcatcctgggactcagggatcacgtcagaacagg
aggccagagatggcaaggtccaagaaagtagataaataccaagagagaat
ttttcagacgagccagggaagctgcacatatgtcacagagacttgtgaca
acattgaggagagaaagccaagtcacaacaaaatcctagccaagtaagga
atttattgcgctgtgtaatccggtaatatccttggcctaatatctattat
aacgtggagcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_37624968_37625905
seq2: B6Ng01-190J02.b_46_990

seq1  GAATTCATGTGCACATGAATGATCCTCCTTGGGAAGTCCCAGGTCCTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGCACATGAATGATCCTCCTTGGGAAGTCCCAGGTCCTAAA  50

seq1  ATAGGTTCCATCCCCAGCACCATATACACTGGGTGTGGTGAAGGACTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTCCATCCCCAGCACCATATACACTGGGTGTGGTGAAGGACTGTG  100

seq1  ATCCTAGCACTCCAGATCGGGGAGGCAGGAGGAGCAGATGTCCAACTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGCACTCCAGATCGGGGAGGCAGGAGGAGCAGATGTCCAACTTAC  150

seq1  CTTCAGTAAGTTTGAGACTAGTCTGGGATATACAGATCTTGTCTCAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTAAGTTTGAGACTAGTCTGGGATATACAGATCTTGTCTCAAAAA  200

seq1  CAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAA  250

seq1  CAAAACATGAGTTAAGCCAAGCATGTTGATACATGCCTGCAGTCCTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATGAGTTAAGCCAAGCATGTTGATACATGCCTGCAGTCCTCTCA  300

seq1  CCTAGTACTTGGGAGGCAGAGGCAGGAGGATGCAGAGATGAAGGCTAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTACTTGGGAGGCAGAGGCAGGAGGATGCAGAGATGAAGGCTAGTC  350

seq1  TGGGCTATGTGAAAGCTGTCTTATCAAAATGTGCATGGAGCATTTTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTATGTGAAAGCTGTCTTATCAAAATGTGCATGGAGCATTTTGTGG  400

seq1  TGAGACTCATCTGTGAGTCTGGTTCATCATCCCTGCAGAGGATGGGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTCATCTGTGAGTCTGGTTCATCATCCCTGCAGAGGATGGGAACT  450

seq1  CGGGTCTCACACAGGACTGCTTTGTGCTCCCTTGGCTCAGCAGGTAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCTCACACAGGACTGCTTTGTGCTCCCTTGGCTCAGCAGGTAATTG  500

seq1  AGTGAGGTTTATCATTTCAGGGGTTTCTTCTCCTATAAGCTCTGAGCCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGTTTATCATTTCAGGGGTTTCTTCTCCTATAAGCTCTGAGCCGA  550

seq1  TTAAAAGAGACTAATGGCCCTTGTTTGTTTCCAAGCTGAGATCCTAGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAGACTAATGGCCCTTGTTTGTTTCCAAGCTGAGATCCTAGGTC  600

seq1  TGGAAGATGAAACTTCTCCCTCCCTCCCTCCTTCTCTCCCTCCCT-CCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGAAGATGAAACTTCTCCCTCCCTCCCTCCTTCTCTCCCTCCCTCCCCT  650

seq1  CTCTCCCTCCCTTCCCTCTTCTCTTTCCTTCTTTCCTCCCTTTCTCCTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTCCCTTCCCTCTTCTCTTTCCTTCTTTCCTCCCTTTCTCCTTT  700

seq1  CCTCCTTGACTTCCTTCCTCCTTCCTCATTTCCTCCCTCACTCCCTTCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTGACTTCCTTCCTCCTTCCTCATTTCCTCCCTCACTCCCTTCCT  750

seq1  CCTTTCTTTCTTTACTCCCTCCGTCCCTCCCTCCTCCCT-CCCTCCCTTT  798
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTTTCTTTCTTTACTCCCTCCGTCCCTCCCTCCTCCCTCCCCTCCCTTT  800

seq1  CTTC-TTTGC-TTCCTTCCTTCCTTTCTCCCTCCCCCCTCCTCTTCTTTC  846
      |||| ||||| ||||||||||||||||||||||||||||||||| |||||
seq2  CTTCTTTTGCTTTCCTTCCTTCCTTTCTCCCTCCCCCCTCCTCTCCTTTC  850

seq1  TTCCTCTTTTCCCTTCT-GTCTTTTTTCGTGAGCAGGGGACAATCCAATA  895
      ||||||||||||||||| | ||||||||||||||||||||||||||||||
seq2  TTCCTCTTTTCCCTTCTGGCCTTTTTTCGTGAGCAGGGGACAATCCAATA  900

seq1  GAGCACAAAGTGTCAAC-TGGAAACAG-TTTAGGGAAGGAGAGGG  938
      |||||||||||||| || || || ||| |||||||||||||||||
seq2  GAGCACAAAGTGTCCACTTGTAATCAGTTTTAGGGAAGGAGAGGG  945

seq1: chr5_37803937_37805044
seq2: B6Ng01-190J02.g_68_1180 (reverse)

seq1  TGTGCT-CAC-TTATAAATAGATATTA-GCCAAAGAAATATACGGGA-TA  46
      |||||| ||| |||| ||||||||||| ||||| || || ||| ||| ||
seq2  TGTGCTCCACGTTAT-AATAGATATTAGGCCAAGGATAT-TACCGGATTA  48

seq1  CACA-CGCAAATAATTCTTTCCAT-GCTAAGATTTTG-TGTGACTTGGGC  93
      |||| |||||  ||||| || | | |||| ||||||| |||||||| |||
seq2  CACAGCGCAATAAATTCCTTACTTGGCTAGGATTTTGTTGTGACTT-GGC  97

seq1  TTTCTCTCCTGCATGTTGTCAC-AGTCTCTGTGACATATGTGCAGCTTCC  142
      ||||||||||  |||||||||| |||||||||||||||||||||||||||
seq2  TTTCTCTCCTCAATGTTGTCACAAGTCTCTGTGACATATGTGCAGCTTCC  147

seq1  CT-GCTCTGTCTGAAAAATTCTCTCCTTGTATTTATCTACTTTTCTGGGA  191
      || |||| ||||||||||||||||| | |||||||||||| ||||| |||
seq2  CTGGCTC-GTCTGAAAAATTCTCTCTTGGTATTTATCTAC-TTTCTTGGA  195

seq1  CC-TGCCATCTCTTGGCCTCCTGTTCTGACGTGATCCCTGAGTCCCAGGA  240
      || ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCATCTC-TGGCCTCCTGTTCTGACGTGATCCCTGAGTCCCAGGA  244

seq1  TGATGGGTGTGATTCAGACACCCCATTTAGCCTGCAGCATTCTAAAGGCT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGTGTGATTCAGACACCCCATTTAGCCTGCAGCATTCTAAAGGCT  294

seq1  CTCTTACAGTGCCAGC-TGTGGGTCTCTGAGTTGATCACCATTCACAGCA  339
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCTTACAGTGCCAGCTTGTGGGTCTCTGAGTTGATCACCATTCACAGCA  344

seq1  AAACGCAGCTTCCCTGGTGATGGTTGAGAGTATGTGTGGATTTTTCTTTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCAGCTTCCCTGGTGATGGTTGAGAGTATGTGTGGATTTTTCTTTT  394

seq1  TTAAATCCCATGAATTACAGTAACATGTTCCAGTGAGGAGAAAGCTCTCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCCCATGAATTACAGTAACATGTTCCAGTGAGGAGAAAGCTCTCA  444

seq1  TTCACTGAAGCCCTGGGTGTGCAGGCATGCGCAGAGACCCATGACCAAGG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGAAGCCCTGGGTGTGCAGGCATGCGCAGAGACCCATGACCAAGG  494

seq1  CAACTTACAAAAGGAAGCACTTAACTGAGCTCTTTCAAAGGGTTGGAGCA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTACAAAAGGAAGCACTTAACTGAGCTCTTTCAAAGGGTTGGAGCA  544

seq1  CATGATGACAGAGTAAAGGCATGGCAGAGGGAACATCTTGTTTCACAAGC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGACAGAGTAAAGGCATGGCAGAGGGAACATCTTGTTTCACAAGC  594

seq1  AGGAAACTGAGGCATACTAGAAATAGTGTGAGTCTTTAGAAACCCCAAAG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACTGAGGCATACTAGAAATAGTGTGAGTCTTTAGAAACCCCAAAG  644

seq1  CCTGCCCTTCCTCCTAATCTTTTGCCAACACTTCCACCAGCTAGGGAGCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCTTCCTCCTAATCTTTTGCCAACACTTCCACCAGCTAGGGAGCA  694

seq1  AGTACTCAGACACATGAGCCTATGAGAGCCATTCTCACTCAGAACATCAC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTCAGACACATGAGCCTATGAGAGCCATTCTCACTCAGAACATCAC  744

seq1  CCTTCTTCTACTCATATCTTCCTGGATGCTGGAGCAAAGACCCCCATTTA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCTACTCATATCTTCCTGGATGCTGGAGCAAAGACCCCCATTTA  794

seq1  CCCTGTATGGTTCTCAGATAACCTGGACACCAACAGGAGACCCAGGTGGT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTATGGTTCTCAGATAACCTGGACACCAACAGGAGACCCAGGTGGT  844

seq1  ACCAGACAGAACAGCTGCAGCCTTTATGTGCAAAATTGTAACTAACATAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACAGAACAGCTGCAGCCTTTATGTGCAAAATTGTAACTAACATAA  894

seq1  CTCATCCATCTTTTAGAATAATATAATCTATCCTGGCCAGGCTGACTGAG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCATCTTTTAGAATAATATAATCTATCCTGGCCAGGCTGACTGAG  944

seq1  GTGGGTTTTTTGTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTAACCAG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTTTTTGTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTAACCAG  994

seq1  GGCTATAAGGAATTTCTAGGAATTTAACCTGAGGACATTAGTTTACAAAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATAAGGAATTTCTAGGAATTTAACCTGAGGACATTAGTTTACAAAA  1044

seq1  CTCACTTACTTACTAGGTTAAAGGGGAGGAAACCACTCATGTGGCCATTT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTACTTACTAGGTTAAAGGGGAGGAAACCACTCATGTGGCCATTT  1094

seq1  CACCACATACAGAGAATTC  1108
      |||||||||||||||||||
seq2  CACCACATACAGAGAATTC  1113