BAC Information

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BAC

Clone NameB6Ng01-190M01
Chromosome5 (Build37)
Map Location 124,931,611 - 125,212,032
singlet/doubletdoublet
Overlap gene6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10
Upstream geneIl31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492
Downstream geneCcdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190M01.bB6Ng01-190M01.g
ACCGA014430GA014431
length1,0641,113
definitionB6Ng01-190M01.b B6Ng01-190M01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,931,611 - 124,932,667)(125,210,916 - 125,212,032)
sequence
gaattctttctcttcctggatgtccctcccacctcctatttcctgcctaa
gtcatgggccataggcttttggattgacaggtgatgcattcatacaacac
acaagagattctctctgcagctcctagcacttgctgcccttgtggaggac
cagagttcagttcctagcaccaatatcactgccggtttcaaggctcaact
tgtcatgaaagtaagaggagccgagtttagatgcccagcctatcaatatt
ctgagtggcctccacattcactgagattccgttttaaatcatataaagag
gaagaatcaagaccattcaccaaagtggaatgagatagcaaaagataacc
aagcaaatccacctgcagcttctccaaatgcacacacacattaattgatc
gatttctaagcaattaaaaatttaaaacttaatcataatacactgttact
ttaaagaaagaagtccagattttaaaatctaaagacaagatgtgggggaa
ccctgtgtaattacatatatttgtacaaggaataggtttttacagttaaa
tttggtttctttgtattattactattttcttttccttcctttccttcctt
tccttcctttccttcctttctttctttcttttctttctcttcgagacagg
gtttctctgtatagcgctggctgtcctggaacacactttgtagaccaggc
tggccttgaactcagaaatccgcctgcctctgcctcccaagtgctgggat
taaaggcctgcgccaccacgcccggctattttcatttttaaaacagggtt
tctctgtgtggccctggctatcctggaactcactttgtagaccaggctgg
cctaaaactcagaaattctccttcctctgcctctggggattaaagacgtc
tgtgctgtcaccaccacccagttagtttatttttgtttatgtatatttgg
tgtttggcctgcctgacacatgcttgccgtatcccgggaggtcagaagta
ttggaatcctctgaaactgaaaggtacagtcccgcatggcccataacttg
tgcttggatgttgg
gaattccaggccagccagggctatgaagaccctgtctcaaaatcaaccta
tcttaaatgaataggcacacagacagagctagtggactctccagcccttc
tttggaagcagccactgtctgggagatgccagggtctctgtgggctccgc
ggttacctggcagatgacgtcctttaggagctggagcacctgagagttga
tgaccccatactccatggtctctggcatgatttccattgcttccttcatg
tctgtggcttctgggatggcgtctaaacacaaacacaccctaagcatcca
gccagtgggtggcggggacatttttaggctagtgtcctgggagtctcttc
ttcccatcagaggctctggtcacaaagtcagaagccaaggtaggctgacc
tggatccaaacaagccctgggcgaacgagactaaaatagactacgctgaa
cttttgagttgttggaagtttttaaagacagtgggagctaaaaagttgcc
ctgtttttcacattacagtattaacacggggtctcagggacaagaaattg
atagctttgattttatttgcttacttagttattgttttcttcctttttct
gtttttcttttatctatctatctatctatctatctatctatctatctatc
tatctatctatctatctatttatgtaagtacactgttgctgtcttcagac
acaccagaaaagagggcatcagatcccattacacatggttgtgagccacc
atgtggttgctgggaattgaactcgggacctctggaagaacagtccgtgc
tcttaacctctgagccctctctctagcacctaaaggtcatatttttaaaa
agatgtatttagggggctgaagagatgactcggccagtgcagcacttgct
gttcttgcagctttgagttcagttcctggcacctacatcagaggtgactc
gcaaccatctgccactccagtgcaagggatcccgtacccccttctgatgt
tttgaggcatcagcatgcatggggtgcatggggtgcacaaaaacactcat
accataaaacaaaaaatacatcttaaaattcgcatacagcttatcctcaa
ggcctggagagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_124931611_124932667
seq2: B6Ng01-190M01.b_32_1095

seq1  GAATTCTTTCTCTTCCTGGATGTCCCTCCCACCTCCTATTTCCTGCCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCTTCCTGGATGTCCCTCCCACCTCCTATTTCCTGCCTAA  50

seq1  GTCATGGGCCATAGGCTTTTGGATTGACAGGTGATGCATTCATACAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGGCCATAGGCTTTTGGATTGACAGGTGATGCATTCATACAACAC  100

seq1  ACAAGAGATTCTCTCTGCAGCTCCTAGCACTTGCTGCCCTTGTGGAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGATTCTCTCTGCAGCTCCTAGCACTTGCTGCCCTTGTGGAGGAC  150

seq1  CAGAGTTCAGTTCCTAGCACCAATATCACTGCCGGTTTCAAGGCTCAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCAGTTCCTAGCACCAATATCACTGCCGGTTTCAAGGCTCAACT  200

seq1  TGTCATGAAAGTAAGAGGAGCCGAGTTTAGATGCCCAGCCTATCAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGAAAGTAAGAGGAGCCGAGTTTAGATGCCCAGCCTATCAATATT  250

seq1  CTGAGTGGCCTCCACATTCACTGAGATTCCGTTTTAAATCATATAAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGGCCTCCACATTCACTGAGATTCCGTTTTAAATCATATAAAGAG  300

seq1  GAAGAATCAAGACCATTCACCAAAGTGGAATGAGATAGCAAAAGATAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATCAAGACCATTCACCAAAGTGGAATGAGATAGCAAAAGATAACC  350

seq1  AAGCAAATCCACCTGCAGCTTCTCCAAATGCACACACACATTAATTGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATCCACCTGCAGCTTCTCCAAATGCACACACACATTAATTGATC  400

seq1  GATTTCTAAGCAATTAAAAATTTAAAACTTAATCATAATACACTGTTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTAAGCAATTAAAAATTTAAAACTTAATCATAATACACTGTTACT  450

seq1  TTAAAGAAAGAAGTCCAGATTTTAAAATCTAAAGACAAGATGTGGGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAAGAAGTCCAGATTTTAAAATCTAAAGACAAGATGTGGGGGAA  500

seq1  CCCTGTGTAATTACATATATTTGTACAAGGAATAGGTTTTTACAGTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGTAATTACATATATTTGTACAAGGAATAGGTTTTTACAGTTAAA  550

seq1  TTTGGTTTCTTTGTATTATTACTATTTTCTTTTCCTTCCTTTCCTTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTCTTTGTATTATTACTATTTTCTTTTCCTTCCTTTCCTTCCTT  600

seq1  TCCTTCCTTTCCTTCCTTTCTTTCTTTCTTTTCTTTCTCTTCGAGACAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTTCCTTCCTTTCTTTCTTTCTTTTCTTTCTCTTCGAGACAGG  650

seq1  GTTTCTCTGTATAGCGCTGGCTGTCCTGGAACACACTTTGTAGACCAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTATAGCGCTGGCTGTCCTGGAACACACTTTGTAGACCAGGC  700

seq1  TGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGAT  750

seq1  TAAAGGCCTGCGCCACCACGCCCGGCTATTTTCATTTTTAAAACAGGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCCTGCGCCACCACGCCCGGCTATTTTCATTTTTAAAACAGGGTT  800

seq1  TCTCTGTGTGGCCCTGGCTATCCTGGAACTCACTTTGTAGACCAGGCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTGGCCCTGGCTATCCTGGAACTCACTTTGTAGACCAGGCTGG  850

seq1  CCTAAAACTCAGAAATTCTCCTTCCTCTGCCTCT-GGGATTAAAGACGTC  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTAAAACTCAGAAATTCTCCTTCCTCTGCCTCTGGGGATTAAAGACGTC  900

seq1  TGTGCTGTCACCACCACCCAGTTAGTTTATTTTTGTTTTATGTATA-TTG  948
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  TGTGCTGTCACCACCACCCAGTTAGTTTATTTTTG-TTTATGTATATTTG  949

seq1  GTGTTTTGCCTGCCTGACACATGCTTGCCGTATCCCGGGAGGCCAGAAGT  998
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  GTGTTTGGCCTGCCTGACACATGCTTGCCGTATCCCGGGAGGTCAGAAGT  999

seq1  AATGGGATCCTCTGAAACTG-AAGGTACAG-CCCGC--TGTCCATAAC-T  1043
      | ||| |||||||||||||| ||||||||| |||||   | ||||||| |
seq2  ATTGGAATCCTCTGAAACTGAAAGGTACAGTCCCGCATGGCCCATAACTT  1049

seq1  GTGC-TGGGTGTTGG  1057
      |||| ||| ||||||
seq2  GTGCTTGGATGTTGG  1064

seq1: chr5_125210916_125212032
seq2: B6Ng01-190M01.g_62_1174 (reverse)

seq1  ATCTCTCCAGCCCTGGA-GATAAGCTGTATGCGTATTTTAAGATGTATTT  49
      |||||||||| ||| || ||||||||||||||| |||||||||||||  |
seq2  ATCTCTCCAGGCCTTGAGGATAAGCTGTATGCGAATTTTAAGATGTA--T  48

seq1  TTTTTGTTTTATGTGTATGAGTGTTTTTGTGCACCCCATGCACCCCATGC  99
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTATG-GTATGAGTGTTTTTGTGCACCCCATGCACCCCATGC  97

seq1  ATGCCTGATGCCCTCAAACATCAGAAGGGGGTACGGGATCCCCTTGCACT  149
      ||| ||||||||   |||||||||||||||||||||||| ||||||||||
seq2  ATG-CTGATGCCTCAAAACATCAGAAGGGGGTACGGGAT-CCCTTGCACT  145

seq1  GGAGTGGCAGATGGTTGCGAGTCACCCTCTGATGTAGGTGCCAGGAACTG  199
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGAGTGGCAGATGGTTGCGAGTCA-CCTCTGATGTAGGTGCCAGGAACTG  194

seq1  AACTCAAAGCTGCAAGAACAGCAAGTGCTGCACTGGCCGAGTCATCTCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAAGCTGCAAGAACAGCAAGTGCTGCACTGGCCGAGTCATCTCTT  244

seq1  CAGCCCCCTAAATACATCTTTTT-AAAATATGACCTTTAGGTGCTAGAGA  298
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGCCCCCTAAATACATCTTTTTAAAAATATGACCTTTAGGTGCTAGAGA  294

seq1  GAGGGCTCAGAGGTTAAGAGCACGGACTGTTCTTCCAGAGGTCCCGAGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTCAGAGGTTAAGAGCACGGACTGTTCTTCCAGAGGTCCCGAGTT  344

seq1  CAATTCCCAGCAACCACATGGTGGCTCACAACCATGTGTAATGGGATCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCCAGCAACCACATGGTGGCTCACAACCATGTGTAATGGGATCTG  394

seq1  ATGCCCTCTTTTCTGGTGTGTCTGAAGACAGCAACAGTGTACTTACATAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTCTTTTCTGGTGTGTCTGAAGACAGCAACAGTGTACTTACATAA  444

seq1  ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  494

seq1  AGATAGATAAAAGAAAAACAGAAAAAGGAAGAAAACAATAACTAAGTAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAAAAGAAAAACAGAAAAAGGAAGAAAACAATAACTAAGTAAG  544

seq1  CAAATAAAATCAAAGCTATCAATTTCTTGTCCCTGAGACCCCGTGTTAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAATCAAAGCTATCAATTTCTTGTCCCTGAGACCCCGTGTTAAT  594

seq1  ACTGTAATGTGAAAAACAGGGCAACTTTTTAGCTCCCACTGTCTTTAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAATGTGAAAAACAGGGCAACTTTTTAGCTCCCACTGTCTTTAAAA  644

seq1  ACTTCCAACAACTCAAAAGTTCAGCGTAGTCTATTTTAGTCTCGTTCGCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAACAACTCAAAAGTTCAGCGTAGTCTATTTTAGTCTCGTTCGCC  694

seq1  CAGGGCTTGTTTGGATCCAGGTCAGCCTACCTTGGCTTCTGACTTTGTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTTGTTTGGATCCAGGTCAGCCTACCTTGGCTTCTGACTTTGTGA  744

seq1  CCAGAGCCTCTGATGGGAAGAAGAGACTCCCAGGACACTAGCCTAAAAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCCTCTGATGGGAAGAAGAGACTCCCAGGACACTAGCCTAAAAAT  794

seq1  GTCCCCGCCACCCACTGGCTGGATGCTTAGGGTGTGTTTGTGTTTAGACG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCGCCACCCACTGGCTGGATGCTTAGGGTGTGTTTGTGTTTAGACG  844

seq1  CCATCCCAGAAGCCACAGACATGAAGGAAGCAATGGAAATCATGCCAGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCAGAAGCCACAGACATGAAGGAAGCAATGGAAATCATGCCAGAG  894

seq1  ACCATGGAGTATGGGGTCATCAACTCTCAGGTGCTCCAGCTCCTAAAGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGAGTATGGGGTCATCAACTCTCAGGTGCTCCAGCTCCTAAAGGA  944

seq1  CGTCATCTGCCAGGTAACCGCGGAGCCCACAGAGACCCTGGCATCTCCCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATCTGCCAGGTAACCGCGGAGCCCACAGAGACCCTGGCATCTCCCA  994

seq1  GACAGTGGCTGCTTCCAAAGAAGGGCTGGAGAGTCCACTAGCTCTGTCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGGCTGCTTCCAAAGAAGGGCTGGAGAGTCCACTAGCTCTGTCTG  1044

seq1  TGTGCCTATTCATTTAAGATAGGTTGATTTTGAGACAGGGTCTTCATAGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTATTCATTTAAGATAGGTTGATTTTGAGACAGGGTCTTCATAGC  1094

seq1  CCTGGCTGGCCTGGAATTC  1117
      |||||||||||||||||||
seq2  CCTGGCTGGCCTGGAATTC  1113