BAC Information

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BAC

Clone NameB6Ng01-191E19
Chromosome5 (Build37)
Map Location 97,606,412 - 97,769,376
singlet/doubletdoublet
Overlap geneLOC100040598, EG433923, EG666293
Upstream geneMrpl1, Fras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3
Downstream geneC80008, Gk2, Antxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191E19.bB6Ng01-191E19.g
ACCGA014827GA014828
length1,0301,169
definitionB6Ng01-191E19.b B6Ng01-191E19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,606,412 - 97,607,441)(97,768,240 - 97,769,376)
sequence
gaattctctctgtgcacttcttgagactgagaacaaaaggctggacatct
ttggtaagtcagtatccattgtgctgtgctggggaaggactttcccaata
gcctccatgttgaatagacgagatcttagttcttcatacttttctccccc
acatccttcattctgacaatttaaaattaaacaaactttactgtgtgtct
gtttcttatgctgctgtttttgttttataatttgcaaggcaatgtgccca
gccagctctggtcaaaagaatttctttatagtttacaaataacttaagtc
tatattttctcacataattttggttgcttaaataagtatagatggaagat
ataacctgtgcactgaagtacacactacaatcaaacacaccagtggcttc
tttctcccttagggtatttcaaatagtcctgtgtaaagatctgaaaaaga
taaagtatacttctaatttgacacttgcttaaatagatccatgacttcac
tttcagatagttgaaaaattttatctatagtgattttttttaattttaaa
attcccagacacttcctgttaatagtagtgatagccatcgaaaacatttt
aagcttttccattttcaatttcattttatcctgattaatttgataatttg
ctaagttccttttctgcccattgacttggttacaattgctacatagcaaa
aagaaaaatgggataacattatagtaaattttgaaggaaatctaaagata
atctaatctaaccctttattttaaaaatgaaactgaggccaaggttaagt
gactcatcttggggtcacactgctacttagagacagatattctgacacta
aatcaatcacacttgttaacaaatcacactgcccacacccagcatgggct
ttctaagactgtgctgagatctgtgggttgcagcatgaattacccagtct
gactcccactgtggctaatgctctgctcactgctgaggtatttcatttcc
ccattttttatttgtgtgtgtgtgtgcgtg
gtcacacaattgtagaaactctctcccactggcaaaatcacacctctgtc
agagcacgaggcaaaccaaagtcagcttctgtagacaatatgaagcagcc
tcatgtcccacacctggaattaagatgaaaacatattcttacaatatttc
tgtgtttctaaaagaaacccaaaactccaaattgtcgctatataaatatg
cgtaagtagtgaatataatcacacggccttctcaagcgttcttatcactc
cctgccccacgtgccttcaccagcctgatttctaacaacacagactaatt
tcactttattctctatttcatctagacatagacatgtgctattttgtaag
atccatccatgttagtgtgtgtaattacagttcattaccatgcatgtaaa
gtctccctgtgtggctacagcatactgattcacctactctgttgttgagg
atctattatgataaaactctttagattgtttatgggtttatcacattgta
aaattgtaatactcttgtaaacataatttcatgtctctaagtaacaacat
atgtgcatttcaggtgactaattgcagtgatgggtcactgtgtgagtgtg
tgtgtgtgtgtgtgtgtgtgcgtgcgcgcatgcatgcatagtcaagcttc
atttggcttggcaaacaaaggcaaaataccttttctcatttttctaatgg
attacttgcttaaaaattttttcaaagtattatccacaatgggtatgtgc
tttgatatgatttgatctcacctgttttgtctttttactgtctttaaaat
atctttcagagaatgatagtactgtataatcagggttttctgaaagaaca
gaactgatagaatatatatatatgtatgatttatttagattggcttatta
gattgtgggtccaatttcgtccaacagtgcaacagttggcctatctcatt
gacagaaaaaagaaactctgggtatttgttcagtcctcccaaggctgggg
tgttttgaagaactcagtctgggtgcttggggtgttacagggaaccactg
gttcacctatcctgttataggaaattcttaagagaacatggatttatatc
cagccgctaacaaggacctatggaaccttgccagaagagagttagggcaa
gcaagccaataaagcgttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_97606412_97607441
seq2: B6Ng01-191E19.b_44_1073

seq1  GAATTCTCTCTGTGCACTTCTTGAGACTGAGAACAAAAGGCTGGACATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGTGCACTTCTTGAGACTGAGAACAAAAGGCTGGACATCT  50

seq1  TTGGTAAGTCAGTATCCATTGTGCTGTGCTGGGGAAGGACTTTCCCAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAGTCAGTATCCATTGTGCTGTGCTGGGGAAGGACTTTCCCAATA  100

seq1  GCCTCCATGTTGAATAGACGAGATCTTAGTTCTTCATACTTTTCTCCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCATGTTGAATAGACGAGATCTTAGTTCTTCATACTTTTCTCCCCC  150

seq1  ACATCCTTCATTCTGACAATTTAAAATTAAACAAACTTTACTGTGTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTTCATTCTGACAATTTAAAATTAAACAAACTTTACTGTGTGTCT  200

seq1  GTTTCTTATGCTGCTGTTTTTGTTTTATAATTTGCAAGGCAATGTGCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTATGCTGCTGTTTTTGTTTTATAATTTGCAAGGCAATGTGCCCA  250

seq1  GCCAGCTCTGGTCAAAAGAATTTCTTTATAGTTTACAAATAACTTAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTCTGGTCAAAAGAATTTCTTTATAGTTTACAAATAACTTAAGTC  300

seq1  TATATTTTCTCACATAATTTTGGTTGCTTAAATAAGTATAGATGGAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTCTCACATAATTTTGGTTGCTTAAATAAGTATAGATGGAAGAT  350

seq1  ATAACCTGTGCACTGAAGTACACACTACAATCAAACACACCAGTGGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTGTGCACTGAAGTACACACTACAATCAAACACACCAGTGGCTTC  400

seq1  TTTCTCCCTTAGGGTATTTCAAATAGTCCTGTGTAAAGATCTGAAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCTTAGGGTATTTCAAATAGTCCTGTGTAAAGATCTGAAAAAGA  450

seq1  TAAAGTATACTTCTAATTTGACACTTGCTTAAATAGATCCATGACTTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATACTTCTAATTTGACACTTGCTTAAATAGATCCATGACTTCAC  500

seq1  TTTCAGATAGTTGAAAAATTTTATCTATAGTGATTTTTTTTAATTTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATAGTTGAAAAATTTTATCTATAGTGATTTTTTTTAATTTTAAA  550

seq1  ATTCCCAGACACTTCCTGTTAATAGTAGTGATAGCCATCGAAAACATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGACACTTCCTGTTAATAGTAGTGATAGCCATCGAAAACATTTT  600

seq1  AAGCTTTTCCATTTTCAATTTCATTTTATCCTGATTAATTTGATAATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTTCCATTTTCAATTTCATTTTATCCTGATTAATTTGATAATTTG  650

seq1  CTAAGTTCCTTTTCTGCCCATTGACTTGGTTACAATTGCTACATAGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTCCTTTTCTGCCCATTGACTTGGTTACAATTGCTACATAGCAAA  700

seq1  AAGAAAAATGGGATAACATTATAGTAAATTTTGAAGGAAATCTAAAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAATGGGATAACATTATAGTAAATTTTGAAGGAAATCTAAAGATA  750

seq1  ATCTAATCTAACCCTTTATTTTAAAAATGAAACTGAGGCCAAGGTTAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATCTAACCCTTTATTTTAAAAATGAAACTGAGGCCAAGGTTAAGT  800

seq1  GACTCATCTTGGGGTCACACTGCTACTTAGAGACAGATATTCTGACACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATCTTGGGGTCACACTGCTACTTAGAGACAGATATTCTGACACTA  850

seq1  AATCAATCACACTTGTTAACAAATCACACTGCCCACACCCAGCATGGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATCACACTTGTTAACAAATCACACTGCCCACACCCAGCATGGGCT  900

seq1  TTCTAAGACTGTGCTGAGATCTGTGGGTTGCAGCATGAATTACCCAGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGACTGTGCTGAGATCTGTGGGTTGCAGCATGAATTACCCAGTCT  950

seq1  GACTCCCACTGTGGCTAATGCTCTGCTCACTGCTGAGGTATTTCATTTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCACTGTGGCTAATGCTCTGCTCACTGCTGAGGTATTTCATTTCC  1000

seq1  CCATTTTTTATTTGTGTGTGTGTGTGTGTG  1030
      |||||||||||||||||||||||||| |||
seq2  CCATTTTTTATTTGTGTGTGTGTGTGCGTG  1030

seq1: chr5_97768240_97769376
seq2: B6Ng01-191E19.g_79_1247 (reverse)

seq1  GAACGC-TTATT-GCTTGCTTGCCCTAACTCTC-TCTGGCAAG--TTCAT  45
      |||||| ||||| |||||||||||||||||||| |||||||||  | |||
seq2  GAACGCTTTATTGGCTTGCTTGCCCTAACTCTCTTCTGGCAAGGTTCCAT  50

seq1  TAGTCC-TGTT-GCCGCTGGTATTAAATTCATGTTCT-TTAGGA---TTC  89
        |||| |||| || |||||   ||||| |||||||| ||| ||   | |
seq2  AGGTCCTTGTTAGCGGCTGGATATAAATCCATGTTCTCTTAAGAATTTCC  100

seq1  TAATACA-GATAGATG-ACCAGTGGTTCCCTG--ACACCCC-AGCA-CCA  133
      ||  ||| ||||| || |||||||||||||||  ||||||| |||| |||
seq2  TATAACAGGATAGGTGAACCAGTGGTTCCCTGTAACACCCCAAGCACCCA  150

seq1  GACTGAG-TCTGC-AAACA-CCCAGCCTTGG--AGACTGAACAAATA-CC  177
      ||||||| ||| | ||||| |||||||||||   ||||||||||||| ||
seq2  GACTGAGTTCTTCAAAACACCCCAGCCTTGGGAGGACTGAACAAATACCC  200

seq1  AGATGTTC-TTTTTCTGTC-ATGAGATAG--CCACTGTTGCACTGTTGGA  223
      |||  ||| |||||||||| |||||||||  | |||||||||||||||||
seq2  AGAGTTTCTTTTTTCTGTCAATGAGATAGGCCAACTGTTGCACTGTTGGA  250

seq1  CG-AATTGGA-CCACATTCT-ATAAGCCAATCT-AATAAATCATACATAT  269
      || ||||||| ||||| ||| |||||||||||| ||||||||||||||||
seq2  CGAAATTGGACCCACAATCTAATAAGCCAATCTAAATAAATCATACATAT  300

seq1  ATATATATTCTATCAGTTCTGTTCTTTCAGAAAACCCTGATTATACAGTA  319
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTCTATCAGTTCTGTTCTTTCAGAAAACCCTGATTATACAGTA  350

seq1  CTATCATTCTCTGAAAGATATTTT-AAGACAGTAAAAAGACAAAACAGGT  368
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTATCATTCTCTGAAAGATATTTTAAAGACAGTAAAAAGACAAAACAGGT  400

seq1  GAGATCAAATCATATCAAAGCACATACCCATTGTGGATAATACTTTGAAA  418
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAAATCATATCAAAGCACATACCCATTGTGGATAATACTTTGAAA  450

seq1  AAATTTTTAAGCAAGTAATCCATTAGAAAAATGAGAAAAGGTATTTTGCC  468
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTAAGCAAGTAATCCATTAGAAAAATGAGAAAAGGTATTTTGCC  500

seq1  TTTGTTTGCCAAGCCAAATGAAGCTTGACTATGCATGCATGCGCGCACGC  518
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGCCAAGCCAAATGAAGCTTGACTATGCATGCATGCGCGCACGC  550

seq1  ACACACACACACACACACACACACTCACACAGTGACCCATCACTGCAATT  568
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACTCACACAGTGACCCATCACTGCAATT  600

seq1  AGTCACCTGAAATGCACATATGTTGTTACTTAGAGACATGAAATTATGTT  618
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCTGAAATGCACATATGTTGTTACTTAGAGACATGAAATTATGTT  650

seq1  TACAAGAGTATTACAATTTTACAATGTGATAAACCCATAAACAATCTAAA  668
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAGTATTACAATTTTACAATGTGATAAACCCATAAACAATCTAAA  700

seq1  GAGTTTTATCATAATAGATCCTCAACAACAGAGTAGGTGAATCAGTATGC  718
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTATCATAATAGATCCTCAACAACAGAGTAGGTGAATCAGTATGC  750

seq1  TGTAGCCACACAGGGAGACTTTACATGCATGGTAATGAACTGTAATTACA  768
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCACACAGGGAGACTTTACATGCATGGTAATGAACTGTAATTACA  800

seq1  CACACTAACATGGATGGATCTTACAAAATAGCACATGTCTATGTCTAGAT  818
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAACATGGATGGATCTTACAAAATAGCACATGTCTATGTCTAGAT  850

seq1  GAAATAGAGAATAAAGTGAAATTAGTCTGTGTTGTTAGAAATCAGGCTGG  868
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAGAATAAAGTGAAATTAGTCTGTGTTGTTAGAAATCAGGCTGG  900

seq1  TGAAGGCACGTGGGGCAGGGAGTGATAAGAACGCTTGAGAAGGCCGTGTG  918
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCACGTGGGGCAGGGAGTGATAAGAACGCTTGAGAAGGCCGTGTG  950

seq1  ATTATATTCACTACTTACGCATATTTATATAGCGACAATTTGGAGTTTTG  968
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTCACTACTTACGCATATTTATATAGCGACAATTTGGAGTTTTG  1000

seq1  GGTTTCTTTTAGAAACACAGAAATATTGTAAGAATATGTTTTCATCTTAA  1018
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTTTAGAAACACAGAAATATTGTAAGAATATGTTTTCATCTTAA  1050

seq1  TTCCAGGTGTGGGACATGAGGCTGCTTCATATTGTCTACAGAAGCTGACT  1068
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTGTGGGACATGAGGCTGCTTCATATTGTCTACAGAAGCTGACT  1100

seq1  TTGGTTTGCCTCGTGCTCTGACAGAGGTGTGATTTTGCCAGTGGGAGAGA  1118
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGCCTCGTGCTCTGACAGAGGTGTGATTTTGCCAGTGGGAGAGA  1150

seq1  GTTTCTACAATTGTGTGAC  1137
      |||||||||||||||||||
seq2  GTTTCTACAATTGTGTGAC  1169