BAC Information

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BAC

Clone NameB6Ng01-191G20
Chromosome5 (Build37)
Map Location 121,402,128 - 121,565,225
singlet/doubletdoublet
Overlap geneRph3a, LOC665299
Upstream geneRbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i
Downstream genePtpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191G20.bB6Ng01-191G20.g
ACCGA014921GA014922
length1,0951,167
definitionB6Ng01-191G20.b B6Ng01-191G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,564,118 - 121,565,225)(121,402,128 - 121,403,298)
sequence
gaattctctggactagaaaattccagcaactcccaggctgcccacatttt
gcatgagattctgggagatctgtggctatccttatacctattcggggcca
ccctcctccaaaaaggttctttacctccatgtataaaacaggatagtatg
cctacccatgacttttttttttttttttttggagacagcatctttgtagc
ccggctggcctcaaacctggagtgctaggattactggtgtgtgttggcat
gccctgcttttcagttttggtcttcgagatattgaattccattaaatccc
caagtccagggcttgtgacatacatagctcagttggtacagcccagcagg
cacatagcctcccatttgttcccctgtaccacctaaaaccaggtgaggtg
gcacatgcctaccatgccagcactcacaaggtaaaggcaggaggaccaag
agttcagtgtcatctctggctacttagtgagtgtgaggcccgtctgggct
atggtaggccctgccacgtgcaattgagcagcttcatgagaggccaggga
ggatggcttcagttttgctcctgataccaaagtttctcacctggttatat
gtgtcctgaacacacacatacaggaccctgtgtagttcagagccagtccg
agcctggactgccattggctgaggaagcagtcgtcagtacagtctgccca
ggtggcagtgaggccggaatcctcctgcctccacctcccaatcgctgaga
ttgcaggcacgaagcggtccttccgccttgatttgttgactccctccgtg
actgatttagtttttctggcgtgaatcccaagcgcttgccattcagttgg
tatttttaggctctgttttaagaagagaaaccagaacaattttaaaaggg
cgaatgcaaagtgcttctcttagcaggaagtgactacgccctccggaagc
cagctcacctgccaagtggcagctggggcaattcaccgtggtctctagac
agaaggcagttctggttatttcactgtggagtgattgtgcacacagcccg
tgtggatgtatcccttagagggcatcctcagcctgtcttgtcctg
gaattccagggcacccagtgtggctgcaggcaacagaagacaagagtcaa
gcgaagcatttgcttagtcaattcacgagcatttcctgggtgcttaccaa
tgtgtctggcctcagctagacactgggaccacagaagagagggagggcag
gccctggtctgatcctccatctattctggcagatctctctccttgggggt
ccttccaccatcatttataaatgtgtttacttagtgacttcatctcctga
cagattgaggttaccctgaagacaagggctgggatggctgattgaccact
acgtgcccctactgtgtgcagggcacatagtaggtattcccgtgtgtgct
gaaggaatgaatgaaagtcagtgtttgctgtttcccttcctaggaatgct
ctcccacgtcattcccgcgtgactcataccctctcaagccctccagcttg
gctcaagagtcacttcctagagaagccctcccttaagcagccactggaga
gatcactcagcctgcgatgagctcattcatcgttggactctttctcccct
gttgcgttttgccctaatgtcctagtgcctggagcagcttgagtctcagg
atgcgaggtcaataaatcctcgtccatgacaaagatgagccagcaaggaa
cagagagaagccaagcttgctgtaaccagccctgcaactgagcattcgtc
agggcagcctggaggctcggagaggtcacacttgagagacaggtgactga
aggatcatggaagagcggccaggataaggaccagggagggcagatacgga
gtgctgttgaggctgacaagacaggtgggttcccctctcaggctcccctc
tcccttccctgagaccacagatccctgactctggagagcacccgttacaa
cagggacagctgctacaacacacagtggtggcccctcgagggactggagc
cttttttcacttgatagctgtgctgggtattttcccctctctagctgtgc
tgggttggttgtgacactgacccacaggcaagaagggaacctctatgaag
aaatgtcttaacagacctagcctgtagacattcttagtgagtggtgccca
ccccttgactgatgtcctggtctctaccgaagcaggtggtagctacgaga
acaggccagataagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_121564118_121565225
seq2: B6Ng01-191G20.b_46_1140 (reverse)

seq1  CAGGACAAAGGACAGGCTGAAAGATGGCCCCTCT-AGGGATAACATTCCA  49
      ||||||||  ||||||||| | ||||  |||||| |||||| ||| ||||
seq2  CAGGACAA--GACAGGCTG-AGGATG--CCCTCTAAGGGAT-ACA-TCCA  43

seq1  CACGGGGCTGTGTGCACAATCCACTCCAACAGTGAAATTACCAGAAACTG  99
      ||| |||||||||||||||| |||||| |||||||||| ||||| |||||
seq2  CAC-GGGCTGTGTGCACAAT-CACTCC-ACAGTGAAATAACCAG-AACTG  89

seq1  CCTTCTGTCTTAGAGGACCACGGTGAATTGCCCCAGCTGGCCACCTTGGC  149
      ||||||||| |||| ||||||||||||||||||||||| |||| ||||||
seq2  CCTTCTGTC-TAGA-GACCACGGTGAATTGCCCCAGCT-GCCA-CTTGGC  135

seq1  AGGTGAGCTGGCTTCCGGAGGGGCGTAGTCACTTCCTGCT-AGAGAAGCA  198
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  AGGTGAGCTGGCTTCCGGA-GGGCGTAGTCACTTCCTGCTAAGAGAAGCA  184

seq1  CTTTGCATTCGGCCTTTTAAAATTGTTCTGGTTTCTCTTCTT-AAACAGA  247
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  CTTTGCATTCGCCCTTTTAAAATTGTTCTGGTTTCTCTTCTTAAAACAGA  234

seq1  GCCTAAAAATACCAACTGAATGGCAAGCGCTTGGGATTCACGCCAGAAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAAATACCAACTGAATGGCAAGCGCTTGGGATTCACGCCAGAAAA  284

seq1  ACTAAATCAGTCACGGAGGGAGTCAACAAATCAAGGCGGAAGGACCGCTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATCAGTCACGGAGGGAGTCAACAAATCAAGGCGGAAGGACCGCTT  334

seq1  CGTGCCTGCAATCTCAGCGATTGGGAGGTGGAGGCAGGAGGATTCCGGCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCCTGCAATCTCAGCGATTGGGAGGTGGAGGCAGGAGGATTCCGGCC  384

seq1  TCACTGCCACCTGGGCAGACTGTACTGACGACTGCTTCCTCAGCCAATGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCCACCTGGGCAGACTGTACTGACGACTGCTTCCTCAGCCAATGG  434

seq1  CAGTCCAGGCTCGGACTGGCTCTGAACTACACAGGGTCCTGTATGTGTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAGGCTCGGACTGGCTCTGAACTACACAGGGTCCTGTATGTGTGT  484

seq1  GTTCAGGACACATATAACCAGGTGAGAAACTTTGGTATCAGGAGCAAAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGACACATATAACCAGGTGAGAAACTTTGGTATCAGGAGCAAAAC  534

seq1  TGAAGCCATCCTCCCTGGCCTCTCATGAAGCTGCTCAATTGCACGTGGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCATCCTCCCTGGCCTCTCATGAAGCTGCTCAATTGCACGTGGCA  584

seq1  GGGCCTACCATAGCCCAGACGGGCCTCACACTCACTAAGTAGCCAGAGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTACCATAGCCCAGACGGGCCTCACACTCACTAAGTAGCCAGAGAT  634

seq1  GACACTGAACTCTTGGTCCTCCTGCCTTTACCTTGTGAGTGCTGGCATGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGAACTCTTGGTCCTCCTGCCTTTACCTTGTGAGTGCTGGCATGG  684

seq1  TAGGCATGTGCCACCTCACCTGGTTTTAGGTGGTACAGGGGAACAAATGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATGTGCCACCTCACCTGGTTTTAGGTGGTACAGGGGAACAAATGG  734

seq1  GAGGCTATGTGCCTGCTGGGCTGTACCAACTGAGCTATGTATGTCACAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTATGTGCCTGCTGGGCTGTACCAACTGAGCTATGTATGTCACAAG  784

seq1  CCCTGGACTTGGGGATTTAATGGAATTCAATATCTCGAAGACCAAAACTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGACTTGGGGATTTAATGGAATTCAATATCTCGAAGACCAAAACTG  834

seq1  AAAAGCAGGGCATGCCAACACACACCAGTAATCCTAGCACTCCAGGTTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGGGCATGCCAACACACACCAGTAATCCTAGCACTCCAGGTTTG  884

seq1  AGGCCAGCCGGGCTACAAAGATGCTGTCTCCAAAAAAAAAAAAAAAAAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCGGGCTACAAAGATGCTGTCTCCAAAAAAAAAAAAAAAAAAG  934

seq1  TCATGGGTAGGCATACTATCCTGTTTTATACATGGAGGTAAAGAACCTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGTAGGCATACTATCCTGTTTTATACATGGAGGTAAAGAACCTTT  984

seq1  TTGGAGGAGGGTGGCCCCGAATAGGTATAAGGATAGCCACAGATCTCCCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGAGGGTGGCCCCGAATAGGTATAAGGATAGCCACAGATCTCCCA  1034

seq1  GAATCTCATGCAAAATGTGGGCAGCCTGGGAGTTGCTGGAATTTTCTAGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCATGCAAAATGTGGGCAGCCTGGGAGTTGCTGGAATTTTCTAGT  1084

seq1  CCAGAGAATTC  1108
      |||||||||||
seq2  CCAGAGAATTC  1095

seq1: chr5_121402128_121403298
seq2: B6Ng01-191G20.g_66_1232

seq1  GAATTCCAGGGCACCCAGTGTGGCTGCAGGCAACAGAAGACAAGAGTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCACCCAGTGTGGCTGCAGGCAACAGAAGACAAGAGTCAA  50

seq1  GCGAAGCATTTGCTTAGTCAATTCACGAGCATTTCCTGGGTGCTTACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAGCATTTGCTTAGTCAATTCACGAGCATTTCCTGGGTGCTTACCAA  100

seq1  TGTGTCTGGCCTCAGCTAGACACTGGGACCACAGAAGAGAGGGAGGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGGCCTCAGCTAGACACTGGGACCACAGAAGAGAGGGAGGGCAG  150

seq1  GCCCTGGTCTGATCCTCCATCTATTCTGGCAGATCTCTCTCCTTGGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGTCTGATCCTCCATCTATTCTGGCAGATCTCTCTCCTTGGGGGT  200

seq1  CCTTCCACCATCATTTATAAATGTGTTTACTTAGTGACTTCATCTCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCACCATCATTTATAAATGTGTTTACTTAGTGACTTCATCTCCTGA  250

seq1  CAGATTGAGGTTACCCTGAAGACAAGGGCTGGGATGGCTGATTGACCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGAGGTTACCCTGAAGACAAGGGCTGGGATGGCTGATTGACCACT  300

seq1  ACGTGCCCCTACTGTGTGCAGGGCACATAGTAGGTATTCCCGTGTGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCCCCTACTGTGTGCAGGGCACATAGTAGGTATTCCCGTGTGTGCT  350

seq1  GAAGGAATGAATGAAAGTCAGTGTTTGCTGTTTCCCTTCCTAGGAATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATGAATGAAAGTCAGTGTTTGCTGTTTCCCTTCCTAGGAATGCT  400

seq1  CTCCCACGTCATTCCCGCGTGACTCATACCCTCTCAAGCCCTCCAGCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACGTCATTCCCGCGTGACTCATACCCTCTCAAGCCCTCCAGCTTG  450

seq1  GCTCAAGAGTCACTTCCTAGAGAAGCCCTCCCTTAAGCAGCCACTGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGAGTCACTTCCTAGAGAAGCCCTCCCTTAAGCAGCCACTGGAGA  500

seq1  GATCACTCAGCCTGCGATGAGCTCATTCATCGTTGGACTCTTTCTCCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTCAGCCTGCGATGAGCTCATTCATCGTTGGACTCTTTCTCCCCT  550

seq1  GTTGCGTTTTGCCCTAATGTCCTAGTGCCTGGAGCAGCTTGAGTCTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCGTTTTGCCCTAATGTCCTAGTGCCTGGAGCAGCTTGAGTCTCAGG  600

seq1  ATGCGAGGTCAATAAATCCTCGTCCATGACAAAGATGAGCCAGCAAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGAGGTCAATAAATCCTCGTCCATGACAAAGATGAGCCAGCAAGGAA  650

seq1  CAGAGAGAAGCCAAGCTTGCTGTAACCAGCCCTGCAACTGAGCATTCGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAAGCCAAGCTTGCTGTAACCAGCCCTGCAACTGAGCATTCGTC  700

seq1  AGGGCAGCCTGGAGGCTCGGAGAGGTCACACTTGAGAGACAGGTGACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGCCTGGAGGCTCGGAGAGGTCACACTTGAGAGACAGGTGACTGA  750

seq1  AGGATCATGGAAGAGCGGCCAGGATAAGGACCAGGGAGGGCAGATACGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCATGGAAGAGCGGCCAGGATAAGGACCAGGGAGGGCAGATACGGA  800

seq1  GTGCTGTTGAGGCTGACAAGACAGGTGGGTTCCCCTCTCAGGCTCCCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTTGAGGCTGACAAGACAGGTGGGTTCCCCTCTCAGGCTCCCCTC  850

seq1  TCCCTTCCCTGAGACCACAGATCCCTGACTCTGGAGAGCACCCGTTACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCCTGAGACCACAGATCCCTGACTCTGGAGAGCACCCGTTACAA  900

seq1  CAGGGACAGCTGCTACAACACACAGT-GTGG-CCCTCGAGGGACTGGAGC  948
      |||||||||||||||||||||||||| |||| ||||||||||||||||||
seq2  CAGGGACAGCTGCTACAACACACAGTGGTGGCCCCTCGAGGGACTGGAGC  950

seq1  CTTTTTTCACTTGATAGCTGTGCT-GGTATTTT-CACTCTCTAGCTGTGC  996
      |||||||||||||||||||||||| |||||||| | ||||||||||||||
seq2  CTTTTTTCACTTGATAGCTGTGCTGGGTATTTTCCCCTCTCTAGCTGTGC  1000

seq1  TGGTTGGTTTGTGACAACTTGA--CACAGGCAAGAAGGGAACCTCTATTG  1044
      ||| | | ||||||||   |||  ||||||||||||||||||||||| ||
seq2  TGGGTTGGTTGTGACA--CTGACCCACAGGCAAGAAGGGAACCTCTA-TG  1047

seq1  AGAAAATGTCTTAACAGA-CTAGCCTGTAGAACATTTTCTTAGTGAGTGG  1093
      |  ||||||||||||||| ||||||||||| |||  ||||||||||||||
seq2  AAGAAATGTCTTAACAGACCTAGCCTGTAG-ACA--TTCTTAGTGAGTGG  1094

seq1  TG-CCACCCCTGGACTGATGGTCCTGGGTTCTATCAGAAAGCAGGTTGGG  1142
      || |||||||| ||||||| |||||||  |||| |   ||||||||  ||
seq2  TGCCCACCCCTTGACTGAT-GTCCTGGTCTCTACC--GAAGCAGGT--GG  1139

seq1  TAAGCTACGAGGAACAAGCCAG-TAAGCAG  1171
      | |||||||| ||||| ||||| |||||||
seq2  T-AGCTACGA-GAACAGGCCAGATAAGCAG  1167