BAC Information

Click to search

BAC

Clone NameB6Ng01-191L22
Chromosome5 (Build37)
Map Location 86,084,826 - 86,241,144
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191L22.bB6Ng01-191L22.g
ACCGA015161GA015162
length1,1351,146
definitionB6Ng01-191L22.b B6Ng01-191L22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,084,826 - 86,085,964)(86,240,008 - 86,241,144)
sequence
gaattcatctgaaacagaagatttcctcccctgtgcctgttcagagaagt
catgcttagtatcctttcttgctttgctcattgcaccaatatcctgattt
ttcttccttatgttctcagcaatcatatctaactgatagttaactggcta
tagagtaatataaagccatacctctggccacttctcatttaaggttttag
ctctccttacaagaaggttcttttttgccctgtacattcacaacaacatg
gtgtaccacccctgcagctctcttctttatgtaatataagcacagacttc
atctacaaaccaggataaaatattgttaaacttcttcaaggaaaatatta
agatccagtattttatcttgcatacagaagtccctcaacaaataacgtta
atttaaaacactaactctcaacaaataacattactttaaaacatatgttc
tattatatgtattattattctattatatatatatatatacatatatatat
atatatatatatatatatattcttttcttctttcccaagttcttcaagat
cctccacacctctccttacccactcaatgtcacgtttctttctctctgaa
caacaaacaaaaaaaaggaagaaaaaacaacaaactataacaacaacaac
aaaacaaaacaaaacagaacacatttaaaaaaatggtctgttctgtgttc
gtcaactactcctgaatatggggcctgccctgtagtgtggctaatacatc
cagtatcaccccattggtgaaaactaaatttacccctttaagcagatatc
aattacacatagcttcttggttaggggtgggacattgtgcccagttctca
ttctccactctagaattttatctgttttgaacttgtcacagagaccagaa
cctgttttggcatctgtagtccatatatgcatcagtcccgttgcttctgg
aaaatgctctttcctttgttgtcttaataccatatctcactcttacagtt
cttcaccttctcttcctcctagatccctgagctgaatggaggggtttaca
tatacatccattaggctgagttactacaaacctcctcttgtctgcacatt
atgttgcttgcggatctcaattaaaaacacttttc

gaattctattcagttgcacagaaaatgaaatcatgaaattttcaggtaaa
tgagtggaatcacaaaagatcatattgagtgaggtttacctagatctctt
gtcctatttccaaattaaaaatttaattattaaagatgttttggggtatg
taagaaaacacatttgtcacaatagcaactcagcacggacagaaaaaaat
catcagatatgtttatttcagttaacttaatccaatcattctcaagatga
atttgataagaacaaaaactttagttctaacgttatcaataaaagaaaaa
taaaaatttggactcacaagtagtctatttctcagaaacctgtaaaaatc
acaaacatattaaggacttgaaggcttttacgcttcttccctctattatg
cacatttactttggatgttagatctatttctctgtgtgtgcatgtatgta
gcatgcacaagtatgtggattttccatgtgcagaaagcagaggggattac
aggacatcctctgtcttctcttgattctgttattaataatcaaatcataa
caaatctcaatttgtcttgttgggttggttgaaagcaaatgctttaagta
aaataagcaacaccattaagcacactagctctgttggggaataacactgg
gagtattacatgaggggggcatctgtattcacagacacatcactcacacc
tggcaactgatggagctggaatctgacacataagtctacgtgatattcca
ttggactgtgttcattaaagctgaacagagagatacatagcatcaggaat
gagggaggagccacggctgtaaagagacagtcaaagctacttttcttgat
ctaccagttacttctctcaggtggactttgagttctcatattgtgaccaa
atgagtatggtaagtagagaaattaatgagccactccacctgttgaagtt
tcaggttttttatatttttattttgtgatgaatgggacaggataattctg
ctgagaaatctcatgattcttgttaatggacagactcagagctaaaatat
tcaggaccttttggtggtttgtggcacatgaccaagaacattttcttaat
tgatccttgtcatgagcatgggctaaagacacttttgcatttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_86084826_86085964
seq2: B6Ng01-191L22.b_44_1178

seq1  GAATTCATCTGAAACAGAAGATTTCCTCCCCTGTGCCTGTTCAGAGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGAAACAGAAGATTTCCTCCCCTGTGCCTGTTCAGAGAAGT  50

seq1  CATGCTTAGTATCCTTTCTTGCTTTGCTCATTGCACCAATATCCTGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTAGTATCCTTTCTTGCTTTGCTCATTGCACCAATATCCTGATTT  100

seq1  TTCTTCCTTATGTTCTCAGCAATCATATCTAACTGATAGTTAACTGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTTATGTTCTCAGCAATCATATCTAACTGATAGTTAACTGGCTA  150

seq1  TAGAGTAATATAAAGCCATACCTCTGGCCACTTCTCATTTAAGGTTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTAATATAAAGCCATACCTCTGGCCACTTCTCATTTAAGGTTTTAG  200

seq1  CTCTCCTTACAAGAAGGTTCTTTTTTGCCCTGTACATTCACAACAACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTACAAGAAGGTTCTTTTTTGCCCTGTACATTCACAACAACATG  250

seq1  GTGTACCACCCCTGCAGCTCTCTTCTTTATGTAATATAAGCACAGACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCACCCCTGCAGCTCTCTTCTTTATGTAATATAAGCACAGACTTC  300

seq1  ATCTACAAACCAGGATAAAATATTGTTAAACTTCTTCAAGGAAAATATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAAACCAGGATAAAATATTGTTAAACTTCTTCAAGGAAAATATTA  350

seq1  AGATCCAGTATTTTATCTTGCATACAGAAGTCCCTCAACAAATAACGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAGTATTTTATCTTGCATACAGAAGTCCCTCAACAAATAACGTTA  400

seq1  ATTTAAAACACTAACTCTCAACAAATAACATTACTTTAAAACATATGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAACACTAACTCTCAACAAATAACATTACTTTAAAACATATGTTC  450

seq1  TATTATATGTATTATTATTCTATTATATATATATATATACATATATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATGTATTATTATTCTATTATATATATATATATACATATATATAT  500

seq1  ATATATATATATATATATATTCTTTTCTTCTTTCCCAAGTTCTTCAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATTCTTTTCTTCTTTCCCAAGTTCTTCAAGAT  550

seq1  CCTCCACACCTCTCCTTACCCACTCAATGTCACGTTTCTTTCTCTCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACACCTCTCCTTACCCACTCAATGTCACGTTTCTTTCTCTCTGAA  600

seq1  CAACAAACAAAAAAAAGGAAGAAAAAACAACAAACTATAACAACAACAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACAAAAAAAAGGAAGAAAAAACAACAAACTATAACAACAACAAC  650

seq1  AAAACAAAACAAAACAGAACACATTTAAAAAAATGGTCTGTTCTGTGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAAACAGAACACATTTAAAAAAATGGTCTGTTCTGTGTTC  700

seq1  GTCAACTACTCCTGAATATGGGGCCTGCCCTGTAGTGTGGCTAATACATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTACTCCTGAATATGGGGCCTGCCCTGTAGTGTGGCTAATACATC  750

seq1  CAGTATCACCCCATTGGTGAAAACTAAATTTACCCCTTTAAGCAGATATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCACCCCATTGGTGAAAACTAAATTTACCCCTTTAAGCAGATATC  800

seq1  AATTACACATAGCTTCTTGGTTAGGGGTGGGACATTGTGCCCAGTTCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACACATAGCTTCTTGGTTAGGGGTGGGACATTGTGCCCAGTTCTCA  850

seq1  TTCTCCACTCTAGAATTTTATCTGTTTTGAACTTGTCACAGAGACCAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACTCTAGAATTTTATCTGTTTTGAACTTGTCACAGAGACCAGAA  900

seq1  CCTGTTTTGGCATCTGTAGTCCATATATGCATCAGTCCCGTTGCTTCTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTGGCATCTGTAGTCCATATATGCATCAGTCCCGTTGCTTCTGG  950

seq1  AAAATGCTCTTTCC-TTGTTGTCTT-ATACCATATCTCACTCTTACAGTT  998
      |||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  AAAATGCTCTTTCCTTTGTTGTCTTAATACCATATCTCACTCTTACAGTT  1000

seq1  CTTCCACCTTCTCTTCCTCCTAGATCCCTGAGCCTTGAATGGAGGGGTTT  1048
      ||| |||||||||||||||||||||||||||||  |||||||||||||||
seq2  CTT-CACCTTCTCTTCCTCCTAGATCCCTGAGC--TGAATGGAGGGGTTT  1047

seq1  AACATATACATCCCATTTAGGGCTGAG-TACTACAAAACCTCTCTTTGTC  1097
       |||||||||| |||||   ||||||| |||||| |||||||   |||||
seq2  -ACATATACAT-CCATT--AGGCTGAGTTACTAC-AAACCTCCTCTTGTC  1092

seq1  TGCACATTATG-TGCTTGTGGGTCTCAATAAAAAACATTTTTC  1139
      ||||||||||| |||||| || ||||||| ||||||| |||||
seq2  TGCACATTATGTTGCTTGCGGATCTCAATTAAAAACACTTTTC  1135


seq1: chr5_86240008_86241144
seq2: B6Ng01-191L22.g_67_1212 (reverse)

seq1  AAAGAAATGCAAA--TGTCTTTCCCCTTTCTTCATGACAA-GATCCAATA  47
      |||||||||||||  |||||||  ||  |  ||||||||| |||| | ||
seq2  AAAGAAATGCAAAAGTGTCTTTAGCCCATGCTCATGACAAGGATCAATTA  50

seq1  AG-ACATGTTCCTTTTGTCATGTG-CACAAACCAC--AAAGGTCCTGATT  93
      || | ||||||  || |||||||| ||||||||||  ||||||||||| |
seq2  AGAAAATGTTC--TTGGTCATGTGCCACAAACCACCAAAAGGTCCTGAAT  98

seq1  ATTTTAGCTTCTGAGTCTGTCCATTAACAAGATTCATGAGATTTCTCAGC  143
      |||||||| ||||||||||||||||||||||| |||||||||||||||||
seq2  ATTTTAGC-TCTGAGTCTGTCCATTAACAAGAATCATGAGATTTCTCAGC  147

seq1  AGAATTATCTGTTCCCATTCA-CACAAA--TAAAATAT-AAAAACCTGAA  189
      |||||||||   ||||||||| ||||||   ||||||| |||||||||||
seq2  AGAATTATCCTGTCCCATTCATCACAAAATAAAAATATAAAAAACCTGAA  197

seq1  ACTTCAACAGGTGGAGTGGCTCATTAATTTCTCTACTTACCATACTCATT  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAACAGGTGGAGTGGCTCATTAATTTCTCTACTTACCATACTCATT  247

seq1  TGGTCACAATATGAGAACTCAAAGTCCACCTGAGAGAAGTAACTGGTAGA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACAATATGAGAACTCAAAGTCCACCTGAGAGAAGTAACTGGTAGA  297

seq1  TCAAG-AAAGTAGCTTTGACTGTCTCTTTACAGCCGTGGCTCCTCCCTCA  338
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAAAGTAGCTTTGACTGTCTCTTTACAGCCGTGGCTCCTCCCTCA  347

seq1  TTCCTGATGCTATGTATCTCTCTGTTCAGCTTTAATGAACACAGTCCAAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGATGCTATGTATCTCTCTGTTCAGCTTTAATGAACACAGTCCAAT  397

seq1  GGAATATCACGTAGACTTATGTGTCAGATTCCAGCTCCATCAGTTGCCAG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATCACGTAGACTTATGTGTCAGATTCCAGCTCCATCAGTTGCCAG  447

seq1  GTGTGAGTGATGTGTCTGTGAATACAGATGCCCCCCTCATGTAATACTCC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTGATGTGTCTGTGAATACAGATGCCCCCCTCATGTAATACTCC  497

seq1  CAGTGTTATTCCCCAACAGAGCTAGTGTGCTTAATGGTGTTGCTTATTTT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTATTCCCCAACAGAGCTAGTGTGCTTAATGGTGTTGCTTATTTT  547

seq1  ACTTAAAGCATTTGCTTTCAACCAACCCAACAAGACAAATTGAGATTTGT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGCATTTGCTTTCAACCAACCCAACAAGACAAATTGAGATTTGT  597

seq1  TATGATTTGATTATTAATAACAGAATCAAGAGAAGACAGAGGATGTCCTG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTGATTATTAATAACAGAATCAAGAGAAGACAGAGGATGTCCTG  647

seq1  TAATCCCCTCTGCTTTCTGCACATGGAAAATCCACATACTTGTGCATGCT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCCTCTGCTTTCTGCACATGGAAAATCCACATACTTGTGCATGCT  697

seq1  ACATACATGCACACACAGAGAAATAGATCTAACATCCAAAGTAAATGTGC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGCACACACAGAGAAATAGATCTAACATCCAAAGTAAATGTGC  747

seq1  ATAATAGAGGGAAGAAGCGTAAAAGCCTTCAAGTCCTTAATATGTTTGTG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGAGGGAAGAAGCGTAAAAGCCTTCAAGTCCTTAATATGTTTGTG  797

seq1  ATTTTTACAGGTTTCTGAGAAATAGACTACTTGTGAGTCCAAATTTTTAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACAGGTTTCTGAGAAATAGACTACTTGTGAGTCCAAATTTTTAT  847

seq1  TTTTCTTTTATTGATAACGTTAGAACTAAAGTTTTTGTTCTTATCAAATT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTATTGATAACGTTAGAACTAAAGTTTTTGTTCTTATCAAATT  897

seq1  CATCTTGAGAATGATTGGATTAAGTTAACTGAAATAAACATATCTGATGA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGAGAATGATTGGATTAAGTTAACTGAAATAAACATATCTGATGA  947

seq1  TTTTTTTCTGTCCGTGCTGAGTTGCTATTGTGACAAATGTGTTTTCTTAC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTGTCCGTGCTGAGTTGCTATTGTGACAAATGTGTTTTCTTAC  997

seq1  ATACCCCAAAACATCTTTAATAATTAAATTTTTAATTTGGAAATAGGACA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCCAAAACATCTTTAATAATTAAATTTTTAATTTGGAAATAGGACA  1047

seq1  AGAGATCTAGGTAAACCTCACTCAATATGATCTTTTGTGATTCCACTCAT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCTAGGTAAACCTCACTCAATATGATCTTTTGTGATTCCACTCAT  1097

seq1  TTACCTGAAAATTTCATGATTTCATTTTCTGTGCAACTGAATAGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGAAAATTTCATGATTTCATTTTCTGTGCAACTGAATAGAATTC  1146


| Home | SequenceCutter | Blast | Download |