BAC Information

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BAC

Clone NameB6Ng01-191N02
Chromosome5 (Build37)
Map Location 66,252,795 - 66,413,449
singlet/doubletdoublet
Overlap geneLOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik, BC013481
Upstream geneTlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp
Downstream geneLOC626714, LOC666854, LOC100042394, Nsun7, Apbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191N02.bB6Ng01-191N02.g
ACCGA015217GA015218
length5281,044
definitionB6Ng01-191N02.b B6Ng01-191N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,252,795 - 66,253,328)(66,412,416 - 66,413,449)
sequence
ttggtgaacgctgggattacagtattgagcacatgtttacccagtagtgc
tttgttttctatgtctttttttctgcttcgtattgcctgccagaacactt
agagccacaagggcacaagctttccttttgaacccaacccttgtttgatt
tttttttttcactttttcttgacctcatctcaacacacatatatttctct
atttaaacttaaaacacaagtctcataaaccagactggcctggaaatgct
ctgtgtatccccaagatggcctcaagttcctagtcctttgacttcaccct
cctgagagatttcttgtttttttttttttaaactcatttcatctggcaga
ggtgttggtgtttgtagcagttgccctcacccttagaaacacaaactcag
aggcaaagaaattatttgtgctttgcctacctaataatattccagtggta
atcaagcttcccacaaggaattttctggagagagactaagttcctacttt
actagtaaattgctacgggggggggggg
gaattcaagaccccggtcccgaaaggtgaaggagagagacaactctgact
tctctatgtgtgggctgtggtccataacctacccctgaccgaccgcgtgt
acacatgtatatgtacacgcgcacgcatgcacacacgcacacacacacac
acacacacacacacttgtgcagaggcccaaaacatgcctatatggacata
agaatgtacatatgtaattcataagaaattgttttaacggagtagataca
gagacgcctcctcccctccagctatgacgcagactgtgattgtcctgtct
ttggtctcagactgtgattgtcctgtctttggtctcagactgtgactgcc
ctgtctttggtctcagactgtgactgccctgtctttggtctcagactgtg
attgccctgtcttttggtcttgtcttttttccactttggccctggttagc
tcttaggacccgactcttcatctcttctgtctcccctccacctgcccaaa
tatgctctcctggacctctcgttagtacgttatactgtgacttatgcctg
cacatttgttctttcttggaaagctgccctccgagactaagagtcttcat
ttgtgtagcatatggggaaaagcatctgttgagcagaagaaaaaaaaaat
cgtcgaacaaatttctctctgaacgagtgaatgaatcctaagtatgaatg
gcccgggtctctcaactcattgaacaacagttatccaggatgtgtgtttt
gaaaagcagaaatccctgtctatgaagagtgcctgtcatttggggctgag
ctgggggttcctagactcctgttgtgtacaaggtatctcaggtgattttc
cagtggccaggcatctgaattatcatggctattcaccttccctttcctct
ctatactagcctcaactgctttattcagaaagggttaaccagttggaatt
tatttccactatcacttgaatactagtaaaaaaaattttttcagctcaat
gccctttttgttgataatcttttcactttcgagagttgcggtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_66252795_66253328
seq2: B6Ng01-191N02.b_45_578

seq1  GAATTCTTGGTGAACGCTGGGATTACAGTATTGAGCACATGTTTACCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTGAACGCTGGGATTACAGTATTGAGCACATGTTTACCCAG  50

seq1  TAGTGCTTTGTTTTCTATGTCTTTTTTTCTGCTTCGTATTGCCTGCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTTTGTTTTCTATGTCTTTTTTTCTGCTTCGTATTGCCTGCCAGA  100

seq1  ACACTTAGAGCCACAAGGGCACAAGCTTTCCTTTTGAACCCAACCCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAGAGCCACAAGGGCACAAGCTTTCCTTTTGAACCCAACCCTTGT  150

seq1  TTGATTTTTTTTTTTCACTTTTTCTTGACCTCATCTCAACACACATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTTTTTTTTCACTTTTTCTTGACCTCATCTCAACACACATATAT  200

seq1  TTCTCTATTTAAACTTAAAACACAAGTCTCATAAACCAGACTGGCCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATTTAAACTTAAAACACAAGTCTCATAAACCAGACTGGCCTGGA  250

seq1  AATGCTCTGTGTATCCCCAAGATGGCCTCAAGTTCCTAGTCCTTTGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCTGTGTATCCCCAAGATGGCCTCAAGTTCCTAGTCCTTTGACTT  300

seq1  CACCCTCCTGAGAGATTTCTTGTTTTTTTTTTTTTAAACTCATTTCATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCCTGAGAGATTTCTTGTTTTTTTTTTTTTAAACTCATTTCATCT  350

seq1  GGCAGAGGTGTTGGTGTTTGTAGCAGTTGCCCTCACCCTTAGAAACACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGTGTTGGTGTTTGTAGCAGTTGCCCTCACCCTTAGAAACACAA  400

seq1  ACTCAGAGGCAAAGAAATTATTTGTGCTTTGCCTACCTAATAATATTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGGCAAAGAAATTATTTGTGCTTTGCCTACCTAATAATATTCCA  450

seq1  GTGGTAATCAAGCTTCCCACAAGGAATTTTCTGGAGAGAGACTAAGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAATCAAGCTTCCCACAAGGAATTTTCTGGAGAGAGACTAAGTTCC  500

seq1  TACTTTACTAGTAAATTGCTACGGGGGGGGGGGG  534
      ||||||||||||||||||||||||||||||||||
seq2  TACTTTACTAGTAAATTGCTACGGGGGGGGGGGG  534

seq1: chr5_66412416_66413449
seq2: B6Ng01-191N02.g_65_1108 (reverse)

seq1  AGACCGCA--TCTCGAAAGTG-AAAGATAACAAACAAAAA-GGCATTGAG  46
      ||||||||  ||||||||||| |||||| |  |||||||| |||||||||
seq2  AGACCGCAACTCTCGAAAGTGAAAAGATTATCAACAAAAAGGGCATTGAG  50

seq1  CTG-AAAAATTTTTTTTACTTAGTA-TCAAGTTGAT-GTGTGAAT-AATT  92
      ||| ||||||||||||||| ||||| ||||| |||| |||  ||| ||||
seq2  CTGAAAAAATTTTTTTTAC-TAGTATTCAAG-TGATAGTGGAAATAAATT  98

seq1  CCAACTGGTTTAACCCTTTCTGAATAAAGCAGTTGAGGCTTAGTATAGAG  142
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  CCAACTGG-TTAACCCTTTCTGAATAAAGCAGTTGAGGC-TAGTATAGAG  146

seq1  AGGAAAAGGGAGGTGAATAGCCATGATAATTCAGATGCCTGGCCACTGGA  192
      |||||| || ||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGGAAGGTGAATAGCCATGATAATTCAGATGCCTGGCCACTGGA  196

seq1  AAATCACCTGAGATACC-TGTACACAACAGGAGTCTAG--AACCCCAGCT  239
      ||||||||||||||||| ||||||||||||||||||||  | ||||||||
seq2  AAATCACCTGAGATACCTTGTACACAACAGGAGTCTAGGAACCCCCAGCT  246

seq1  CAG-CCCAAATGACAGGCACTCTTCATAGACAGGGATTTCTGCTTTTCAA  288
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCAAATGACAGGCACTCTTCATAGACAGGGATTTCTGCTTTTCAA  296

seq1  AACACACATCCTGGATAACTGTTGTTCAATGAGTTGAGAGACCCGGGCCA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACATCCTGGATAACTGTTGTTCAATGAGTTGAGAGACCCGGGCCA  346

seq1  TTCATACTTAGGATTCATTCACTCGTTCAGAGAGAAA-TTGTTCGACGAT  387
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTCATACTTAGGATTCATTCACTCGTTCAGAGAGAAATTTGTTCGACGAT  396

seq1  TTTTTTTTTCTTCTGCTCAACAGATGCTTTTCCCCATATGCTACAC-AAT  436
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTTTTTTTCTTCTGCTCAACAGATGCTTTTCCCCATATGCTACACAAAT  446

seq1  GAAGACTCTTAGTCTCGGAGGGCAGCTTTCCAAGAAAGAACAAATGTGCA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTCTTAGTCTCGGAGGGCAGCTTTCCAAGAAAGAACAAATGTGCA  496

seq1  GGCATAAGTCACAGTATAACGTACTAACGAGAGGTCCAGGAGAGCATATT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAAGTCACAGTATAACGTACTAACGAGAGGTCCAGGAGAGCATATT  546

seq1  TGGGCAGGTGGAGGGGAGACAGAAGAGATGAAGAGTCGGGTCCTAAGAGC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGGTGGAGGGGAGACAGAAGAGATGAAGAGTCGGGTCCTAAGAGC  596

seq1  TAACCAGGGCCAAAGTGGAAAAAAGACAAGACCAAAAGACAGGGCAATCA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGGGCCAAAGTGGAAAAAAGACAAGACCAAAAGACAGGGCAATCA  646

seq1  CAGTCTGAGACCAAAGACAGGGCAGTCACAGTCTGAGACCAAAGACAGGG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGAGACCAAAGACAGGGCAGTCACAGTCTGAGACCAAAGACAGGG  696

seq1  CAGTCACAGTCTGAGACCAAAGACAGGACAATCACAGTCTGAGACCAAAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACAGTCTGAGACCAAAGACAGGACAATCACAGTCTGAGACCAAAG  746

seq1  ACAGGACAATCACAGTCTGCGTCATAGCTGGAGGGGAGGAGGCGTCTCTG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACAATCACAGTCTGCGTCATAGCTGGAGGGGAGGAGGCGTCTCTG  796

seq1  TATCTACTCCGTTAAAACAATTTCTTATGAATTACATATGTACATTCTTA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACTCCGTTAAAACAATTTCTTATGAATTACATATGTACATTCTTA  846

seq1  TGTCCATATAGGCATGTTTTGGGCCTCTGCACAAGTGTGTGTGTGTGTGT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATATAGGCATGTTTTGGGCCTCTGCACAAGTGTGTGTGTGTGTGT  896

seq1  GTGTGTGTGTGCGTGTGTGCATGCGTGCGCGTGTACATATACATGTGTAC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGCGTGTGTGCATGCGTGCGCGTGTACATATACATGTGTAC  946

seq1  ACGCGGTCGGTCAGGGGTAGGTTATGGACCACAGCCCACACATAGAGAAG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGGTCGGTCAGGGGTAGGTTATGGACCACAGCCCACACATAGAGAAG  996

seq1  TCAGAGTTGTCTCTCTCCTTCACCTTTCGGGACCGGGGTCTTGAATTC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTGTCTCTCTCCTTCACCTTTCGGGACCGGGGTCTTGAATTC  1044