BAC Information

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BAC

Clone NameB6Ng01-191O12
Chromosome5 (Build37)
Map Location 146,411,250 - 146,412,425
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065
Downstream geneCyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8, Wasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191O12.bB6Ng01-191O12.g
ACCGA015285GA015286
length1,1731,172
definitionB6Ng01-191O12.b B6Ng01-191O12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggtgaggatgtggagaaaggggaacactcctccattgtcggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaacatatcccaactggtaagaaggacacatgctccactat
gtttatagcagccttatttattatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcaattattaaaaaaatgaatttatgaaattcctaagcaaa
tggatggacctggacggcatcatcctgagtgaggtaagccagtcacaaag
gaactcacacaatatgtactcactgataagtggaaattagcccagaaact
tagtatacccgagatataagatacaacttgctaaacacatgaaattcaag
aagaaggaagaccaacgtgtgtacactttaccccttcctagaaatggcaa
caaaacacccatggaaggagttacacagacaaaatttggagctgtgacaa
aaagatggaccatctagtgattggcatatgcagggatccatcccataatc
agcttccaaatgctgacaccattgcacaaactagcaaaattttgctgaaa
ggacccagatatagctctgtcttgtgagactatgccggggcctagcaaat
acagaagtggatgatcacagtcagctattggatgggttcacatggtcccc
aatgcaggagctagagatattaccaaaggagctaagggactgcaccccta
tagggggaacacaatataactaaccagtactccagagcctcttgttctct
agctgcatatgcatcaaagatggcttagtcgggccattcactgcaaggag
aggcccattggaacttgcaacttagatgccagtacgggatcgcaggtcat
agggggactggtgtggtatgggg
gaattctacagttcctttcttgctctaaaggataagccatgctattgttt
ttatagcaaagaaaatcaacaagaatttccatatgatggttactttctaa
ttcttcccagaaggctgtcttgaggttagctagtcattaacacacacata
gcacatcagacctttcaagtgcctttacactctctttgtggtcctcgtga
tttttccctgagataagtaagctattgtccgcattttggagctgaagcaa
tgactcagaagttaagatcattgtctgctcttgtaaagcacatgggttca
attccctgtaacattctcatggctcacaatggtctttagctccatctcct
gggtttttgtagtcctattttggcctccaaaggcatacaggcatacatat
agtgcaaagatatgcatgccagcaagacacccatacatataaagattttt
ttcttaaatctctagagcccatgttatagaagtagagaactacacaagtg
aatgaagtaccaaaaagtgattgctactggattttttaattaaaaaaatt
ttttttggatataatccaaaggatttcataaaccatatcaacccagagaa
ttagtgtggagggcaccatgcccatcacatttataacttgctgcaaatca
aactcaaaaaagagaacaaagcaataaatgtgtgcctttcttgtgagaat
gacaccaaaaaagtcctaagctaaatagtaacaacaacaaaaaccacaga
ggacatgtcatgacaacctggattcaacccaaatttgggatgcctagcac
agaatacaatgtggatatctgctgccccattaatgatgaaagaaaaagct
ataggctttcaaggtagctcagagaacaaagttaccctgtctccaaacct
gacaacctgagttcattcccagcatctatgtgatgggaatagaagatgat
ttccacaaccttgtcttctggtcctccagaccaccacacgttatatgcct
tacatataaaccaattaaatattgtaataaatacctttttttagacggtg
gtttcaacggtgtagctaggcctggatatcctggatgccgagaatcagtc
tggctgaagttgtaagatcctcctgcttcgccttctgagtgcttggataa
attatgtgccaggcatgtggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_146411250_146412425
seq2: B6Ng01-191O12.g_70_1241

seq1  GAATTCTACAGTTCCTTTCTTGCTCTAAAGGATAAGCCATGCTATTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGTTCCTTTCTTGCTCTAAAGGATAAGCCATGCTATTGTTT  50

seq1  TTATAGCAAAGAAAATCAACAAGAATTTCCATATGATGGTTACTTTCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCAAAGAAAATCAACAAGAATTTCCATATGATGGTTACTTTCTAA  100

seq1  TTCTTCCCAGAAGGCTGTCTTGAGGTTAGCTAGTCATTAACACACACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCAGAAGGCTGTCTTGAGGTTAGCTAGTCATTAACACACACATA  150

seq1  GCACAGTCAGACCTTTCAAGTGCCTTTACACTCTCTTTGTGGTCCTCGTG  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACA-TCAGACCTTTCAAGTGCCTTTACACTCTCTTTGTGGTCCTCGTG  199

seq1  ATTTTTCCCTGAGATAAGTAAGCTATTGTCCGCATTTTGGAGCTGAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCCTGAGATAAGTAAGCTATTGTCCGCATTTTGGAGCTGAAGCA  249

seq1  ATGACTCAGAAGTTAAGATCATTGTCTGCTCTTGTAAAGCACATGGGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCAGAAGTTAAGATCATTGTCTGCTCTTGTAAAGCACATGGGTTC  299

seq1  AATTCCCTGTAACATTCTCATGGCTCACAATGGTCTTTAGCTCCATCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCTGTAACATTCTCATGGCTCACAATGGTCTTTAGCTCCATCTCC  349

seq1  TGGGTTTTTGTAGTCCTATTTTGGCCTCCAAAGGCATACAGGCATACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTTGTAGTCCTATTTTGGCCTCCAAAGGCATACAGGCATACATA  399

seq1  TAGTGCAAAGATATGCATGCCAGCAAGACACCCATACATATAAAGATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCAAAGATATGCATGCCAGCAAGACACCCATACATATAAAGATTTT  449

seq1  TTTCTTAAATCTCTAGAGCCCATGTTATAGAAGTAGAGAACTACACAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAATCTCTAGAGCCCATGTTATAGAAGTAGAGAACTACACAAGT  499

seq1  GAATGAAGTACCAAAAAGTGATTGCTACTGGATTTTTTAATTAAAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAGTACCAAAAAGTGATTGCTACTGGATTTTTTAATTAAAAAAAT  549

seq1  TTTTTTTGGATATAATCCAAAGGATTTCATAAACCATATCAACCCAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGGATATAATCCAAAGGATTTCATAAACCATATCAACCCAGAGA  599

seq1  ATTAGTGTGGAGGGCACCATGCCCATCACATTTATAACTTGCTGCAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGTGGAGGGCACCATGCCCATCACATTTATAACTTGCTGCAAATC  649

seq1  AAACTCAAAAAAGAGAACAAAGCAATAAATGTGTGCCTTTCTTGTGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAAAAAGAGAACAAAGCAATAAATGTGTGCCTTTCTTGTGAGAA  699

seq1  TGACACCAAAAAAGTCCTAAGCTAAATAGTAACAACAACAAAAACCACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCAAAAAAGTCCTAAGCTAAATAGTAACAACAACAAAAACCACAG  749

seq1  AGGACATGTCATGACAACCTGGATTCAACCCAAATTTGGGATGCCTAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGTCATGACAACCTGGATTCAACCCAAATTTGGGATGCCTAGCA  799

seq1  CAGAATACAATGTGGATATCTGCTGCCCCATTAATGATGAAAGAAAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATACAATGTGGATATCTGCTGCCCCATTAATGATGAAAGAAAAAGC  849

seq1  TATAGGCTTTCAAGGTAGCTCAGAGAACAAAGTTA-CCTGTCTCCAAACC  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATAGGCTTTCAAGGTAGCTCAGAGAACAAAGTTACCCTGTCTCCAAACC  899

seq1  TGACAACCTGAGTTCAATTCCCAGCATCTATGTGAT-GGAATAGAAGAAT  948
      ||||||||||||||| |||||||||||||||||||| |||||||||| ||
seq2  TGACAACCTGAGTTC-ATTCCCAGCATCTATGTGATGGGAATAGAAG-AT  947

seq1  GAATTTCCACAA-CTTGTCTTCTGGT-CTCCAGACCA-CACACG-TATAT  994
      | |||||||||| ||||||||||||| |||||||||| |||||| |||||
seq2  G-ATTTCCACAACCTTGTCTTCTGGTCCTCCAGACCACCACACGTTATAT  996

seq1  G-CTTACATATAAA-CAAATAAATA-TGTAATAAATA-CTTTTTTTAGAC  1040
      | |||||||||||| ||| |||||| ||||||||||| ||||||||||||
seq2  GCCTTACATATAAACCAATTAAATATTGTAATAAATACCTTTTTTTAGAC  1046

seq1  AGT-GTTTCAACGGTGTAGCTAGCCCTGGATATCCTGGAATTGCTCTGTA  1089
       || ||||||||||||||||||| |||||||||||||||  ||  | |  
seq2  GGTGGTTTCAACGGTGTAGCTAGGCCTGGATATCCTGGA--TG--CCGAG  1092

seq1  GATCAGTCTGGCCTGAAAGTTGTAGAGATCCTCCTGCTTCTGCCTTCTGA  1139
       |||||||||| ||| |||||||| ||||||||||||||| |||||||||
seq2  AATCAGTCTGG-CTG-AAGTTGTA-AGATCCTCCTGCTTC-GCCTTCTGA  1138

seq1  GTGCTGGGATTAAAATAATGTGCCCAGGAATGTGGAG  1176
      ||||| ||||  |||| ||||| ||||| ||||||||
seq2  GTGCTTGGAT--AAATTATGTG-CCAGGCATGTGGAG  1172