BAC Information

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BAC

Clone NameB6Ng01-192D01
Chromosome5 (Build37)
Map Location 130,658,073 - 130,758,618
singlet/doubletdoublet
Overlap geneRabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1
Upstream geneGpr133, Sfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7
Downstream geneA330070K13Rik, Caln1, Wbscr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192D01.bB6Ng01-192D01.g
ACCGA015490GA015491
length1,1411,018
definitionB6Ng01-192D01.b B6Ng01-192D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,658,073 - 130,659,213)(130,757,602 - 130,758,618)
sequence
gaattctgtcacccttctgtctctcttgaaagtgtttaagttgtaccagg
tgtggtgtggacatctgtcatcccatcatgtgggagactgagttaggact
gtaggccagcttgagttacatagtgtgacaaattgaaaactgtcctctta
ttaaaaaagaaaagctggctgtggtggtgtacacattggtcccagcagag
gcagggtgtccctgagttcatgaattatgtgtctatgtgtttgtctatgc
acgagtgcaggcgcccggagtggagtggaaagcatcagatcccctgcaac
tggggtcaggtggttatgagcgtctgtgtgggtgctgggaatcaaatcca
ggatctctgcaggagcagccactgagtcacctctccgtcctcttaactgg
tttttccagttattttgagagatgtcagatcgctgactggttatttacaa
ctgtttacttaaaacattcctttctcctccttcccttaatattatgtgtt
atggtatattagaattcatttgggggttttgtattttttctctttttgga
tttttttcgagacagggtttctctgtgtagccctggctgtcctggaactc
actctgtagaccaggctggcctggaactcagtaatccgcctgcctctgtc
tcccaagtgctggaattaaaggcgtgcaccaccactaccaggccggtttt
gtatttttttagtgatttgtctaagtttagactgtttaactagtatgcag
gaaaaaattcagaaaatgaatttagaaagttaaacactgtgctatttatt
gttgctgaatcattttcctgagttccaaaaagtcttgagaaattctgtta
tctgtagtaaatgtacagagtttggaacctatgttattttactaatgctt
tatgtgtattttattcagtgatactgtatgtattactaagtacagcctta
ccatttaaagctttctttatttctattttttgtcttttgtagttaaagct
gatcttgcacatgaaccttcctgcctcagcttcccaagttctagtaatat
aggtgattctattgatcattgccttttatatcaggtgttttacattgggc
cacatatttttcaataaaattttctagaatgtttttacata
gaattcaagttcagccagagctacatgtgacccggcctcaaaagcaaata
aataagtccataggctgagacaaaaggatcataaacttgagagcagcctg
gattacggaggtagacatcaccaggaaaagggtagggaagggagactgca
gagagtggcgagtgaatcaggaccctcagaacactgctggtggggacata
aaatgaaccgtcgctttgaaaaatagacaattcattggggaaaaagacaa
gccaccgcgatccaccagcgacagcggaagtgtgcaccacataaatccat
ccacggagtgatgtccccggagccatcgcccataacatccaacacacaag
caaccccagtgtccatcaacgtctcagtaaacagacaaggaataacagac
aatgccatcagccacggtggagaatcaaacgcggattcatggtgcccaac
agctctgccacaggaacatcagaccagtgagagaaagcagccggcgcaat
gagccacgcctatgactccagtcttctgaaatgtcaaatgagccacttca
cgtggagacaatgggcagatcgatggctcatgagagctgggggaagactc
gagcacgctgatgctggcctgtcttccagagagggatcctcaagtcagac
tgtgacgatagctatcgacacactaacgtgagccacgtactgcatgtgaa
gtataccacaacagcactgctgagaaccataccggagccatccaaagtgg
ctgctgtcacactaaaagacagtttggtccccagagcccacaaagagaac
caaatcctgtaggctgtgctctgaccgccacacatgtgcgcacacacaaa
ataaatggacaaaaataaataagttgcagaaatagaaatatatttgaata
aaaccataaatacctttgtccacctgcaaagcttcacaacagagtggctg
ccaatcaagctgggtaccttacagtgagagcagaacaacaaaaaagaaaa
atgaaaccctttgctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_130658073_130659213
seq2: B6Ng01-192D01.b_40_1180

seq1  GAATTCTGTCACCCTTCTGTCTCTCTTGAAAGTGTTTAAGTTGTACCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCACCCTTCTGTCTCTCTTGAAAGTGTTTAAGTTGTACCAGG  50

seq1  TGTGGTGTGGACATCTGTCATCCCATCATGTGGGAGACTGAGTTAGGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGTGGACATCTGTCATCCCATCATGTGGGAGACTGAGTTAGGACT  100

seq1  GTAGGCCAGCTTGAGTTACATAGTGTGACAAATTGAAAACTGTCCTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCCAGCTTGAGTTACATAGTGTGACAAATTGAAAACTGTCCTCTTA  150

seq1  TTAAAAAAGAAAAGCTGGCTGTGGTGGTGTACACATTGGTCCCAGCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAGAAAAGCTGGCTGTGGTGGTGTACACATTGGTCCCAGCAGAG  200

seq1  GCAGGGTGTCCCTGAGTTCATGAATTATGTGTCTATGTGTTTGTCTATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTGTCCCTGAGTTCATGAATTATGTGTCTATGTGTTTGTCTATGC  250

seq1  ACGAGTGCAGGCGCCCGGAGTGGAGTGGAAAGCATCAGATCCCCTGCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTGCAGGCGCCCGGAGTGGAGTGGAAAGCATCAGATCCCCTGCAAC  300

seq1  TGGGGTCAGGTGGTTATGAGCGTCTGTGTGGGTGCTGGGAATCAAATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCAGGTGGTTATGAGCGTCTGTGTGGGTGCTGGGAATCAAATCCA  350

seq1  GGATCTCTGCAGGAGCAGCCACTGAGTCACCTCTCCGTCCTCTTAACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCTGCAGGAGCAGCCACTGAGTCACCTCTCCGTCCTCTTAACTGG  400

seq1  TTTTTCCAGTTATTTTGAGAGATGTCAGATCGCTGACTGGTTATTTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCAGTTATTTTGAGAGATGTCAGATCGCTGACTGGTTATTTACAA  450

seq1  CTGTTTACTTAAAACATTCCTTTCTCCTCCTTCCCTTAATATTATGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTACTTAAAACATTCCTTTCTCCTCCTTCCCTTAATATTATGTGTT  500

seq1  ATGGTATATTAGAATTCATTTGGGGGTTTTGTATTTTTTCTCTTTTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATATTAGAATTCATTTGGGGGTTTTGTATTTTTTCTCTTTTTGGA  550

seq1  TTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTC  600

seq1  ACTCTGTAGACCAGGCTGGCCTGGAACTCAGTAATCCGCCTGCCTCTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAGACCAGGCTGGCCTGGAACTCAGTAATCCGCCTGCCTCTGTC  650

seq1  TCCCAAGTGCTGGAATTAAAGGCGTGCACCACCACTACCAGGCCGGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTGCTGGAATTAAAGGCGTGCACCACCACTACCAGGCCGGTTTT  700

seq1  GTATTTTTTTAGTGATTTGTCTAAGTTTAGACTGTTTAACTAGTATGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTTTAGTGATTTGTCTAAGTTTAGACTGTTTAACTAGTATGCAG  750

seq1  GAAAAAATTCAGAAAATGAATTTAGAAAGTTAAACACTGTGCTATTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATTCAGAAAATGAATTTAGAAAGTTAAACACTGTGCTATTTATT  800

seq1  GTTGCTGAATCATTTTCCTGAGTTCCAAAAAGTCTTGAG-AATTCTGTTA  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTGCTGAATCATTTTCCTGAGTTCCAAAAAGTCTTGAGAAATTCTGTTA  850

seq1  TCTGTAGTAAATGTACAGAGTTTGGAACCTATGTTATTTTACTAATGCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGTAAATGTACAGAGTTTGGAACCTATGTTATTTTACTAATGCTT  900

seq1  TATGTGTATTTTATTCAGTGATACTGTATGTATTACTAAGTACAGCCTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTATTTTATTCAGTGATACTGTATGTATTACTAAGTACAGCCTTA  950

seq1  CCA-TTAAAGCTTTCTTTATTTCTATTTTTTGTCTTTTGTAGTTAAGGCT  998
      ||| |||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCATTTAAAGCTTTCTTTATTTCTATTTTTTGTCTTTTGTAGTTAAAGCT  1000

seq1  GATCTTGCACATGGAACCTTCCTGCCTCAGCTTCCCAAGTTCTAGTAATA  1048
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GATCTTGCACAT-GAACCTTCCTGCCTCAGCTTCCCAAGTTCTAGTAATA  1049

seq1  TAGGTGTATCTA-TGATCATTGCTTTTTATATCAGTGTTTTTACATT-GG  1096
      ||||||  |||| |||||||||| |||||||||||   ||||||||| ||
seq2  TAGGTGATTCTATTGATCATTGCCTTTTATATCAGGTGTTTTACATTGGG  1099

seq1  CCACATAATTTTCCAATTAAAATATTTTCTAG-ATGTTTTTACATA  1141
      |||||| ||||| ||||   || ||||||||| |||||||||||||
seq2  CCACAT-ATTTTTCAAT---AAAATTTTCTAGAATGTTTTTACATA  1141

seq1: chr5_130757602_130758618
seq2: B6Ng01-192D01.g_67_1084 (reverse)

seq1  TTGAGCAAAGGGGTTCATTTTTC-TTTTTGTTG-TCTGCTTCTCCCTGTA  48
      |||||||||||| |||||||||| ||||||||| ||||| |||| |||||
seq2  TTGAGCAAAGGGTTTCATTTTTCTTTTTTGTTGTTCTGC-TCTCACTGTA  49

seq1  GGGTA-CCAGC-TGATTGGCAGCCACTCTGGTGTGAAGCTTTGCAGGTGG  96
       |||| ||||| |||||||||||||||||| |||||||||||||||||||
seq2  AGGTACCCAGCTTGATTGGCAGCCACTCTGTTGTGAAGCTTTGCAGGTGG  99

seq1  ACAAAGGTATTTATTGGTTTTATTCAAATATTATTTCTATTTTCTGCAAC  146
      ||||||||||||| |||||||||||||||| |||||||| ||||||||||
seq2  ACAAAGGTATTTA-TGGTTTTATTCAAATA-TATTTCTA-TTTCTGCAAC  146

seq1  TTATTTATTTTTGTCCATTTATTTTGTGTGTGCGCACATGTGTGGCGGTC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTTTGTCCATTTATTTTGTGTGTGCGCACATGTGTGGCGGTC  196

seq1  AGAGCACAGCCTACAGGATTTGGTTCTCTTTGTGGGCTCTGGGGACCAAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACAGCCTACAGGATTTGGTTCTCTTTGTGGGCTCTGGGGACCAAA  246

seq1  CTGTCTTTTAGTGTGACAGCAGCCAC-TTGGATGGCTCCGGTATGGTTCT  295
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGTCTTTTAGTGTGACAGCAGCCACTTTGGATGGCTCCGGTATGGTTCT  296

seq1  CAGCAGTGCTGTTGTGGTATACTTCACATGCAGTACGTGGCTCACGTTAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTGCTGTTGTGGTATACTTCACATGCAGTACGTGGCTCACGTTAG  346

seq1  TGTGTCGATAGCTATCGTCACAGTCTGACTTGAGGATCCCTCTCTGGAAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCGATAGCTATCGTCACAGTCTGACTTGAGGATCCCTCTCTGGAAG  396

seq1  ACAGGCCAGCATCAGCGTGCTCGAGTCTTCCCCCAGCTCTCATGAGCCAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCAGCATCAGCGTGCTCGAGTCTTCCCCCAGCTCTCATGAGCCAT  446

seq1  CGATCTGCCCATTGTCTCCACGTGAAGTGGCTCATTTGACATTTCAGAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTGCCCATTGTCTCCACGTGAAGTGGCTCATTTGACATTTCAGAAG  496

seq1  ACTGGAGTCATAGGCGTGGCTCATTGCGCCGGCTGCTTTCTCTCACTGGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGTCATAGGCGTGGCTCATTGCGCCGGCTGCTTTCTCTCACTGGT  546

seq1  CTGATGTTCCTGTGGCAGAGCTGTTGGGCACCATGAATCCGCGTTTGATT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTCCTGTGGCAGAGCTGTTGGGCACCATGAATCCGCGTTTGATT  596

seq1  CTCCACCGTGGCTGATGGCATTGTCTGTTATTCCTTGTCTGTTTACTGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCGTGGCTGATGGCATTGTCTGTTATTCCTTGTCTGTTTACTGAG  646

seq1  ACGTTGATGGACACTGGGGTTGCTTGTGTGTTGGATGTTATGGGCGATGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGATGGACACTGGGGTTGCTTGTGTGTTGGATGTTATGGGCGATGG  696

seq1  CTCCGGGGACATCACTCCGTGGATGGATTTATGTGGTGCACACTTCCGCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGGGACATCACTCCGTGGATGGATTTATGTGGTGCACACTTCCGCT  746

seq1  GTCGCTGGTGGATCGCGGTGGCTTGTCTTTTTCCCCAATGAATTGTCTAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCTGGTGGATCGCGGTGGCTTGTCTTTTTCCCCAATGAATTGTCTAT  796

seq1  TTTTCAAAGCGACGGTTCATTTTATGTCCCCACCAGCAGTGTTCTGAGGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAGCGACGGTTCATTTTATGTCCCCACCAGCAGTGTTCTGAGGG  846

seq1  TCCTGATTCACTCGCCACTCTCTGCAGTCTCCCTTCCCTACCCTTTTCCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATTCACTCGCCACTCTCTGCAGTCTCCCTTCCCTACCCTTTTCCT  896

seq1  GGTGATGTCTACCTCCGTAATCCAGGCTGCTCTCAAGTTTATGATCCTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGTCTACCTCCGTAATCCAGGCTGCTCTCAAGTTTATGATCCTTT  946

seq1  TGTCTCAGCCTATGGACTTATTTATTTGCTTTTGAGGCCGGGTCACATGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGCCTATGGACTTATTTATTTGCTTTTGAGGCCGGGTCACATGT  996

seq1  AGCTCTGGCTGAACTTGAATTC  1017
      ||||||||||||||||||||||
seq2  AGCTCTGGCTGAACTTGAATTC  1018