BAC Information

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BAC

Clone NameB6Ng01-193A09
Chromosome5 (Build37)
Map Location 130,658,911 - 130,775,725
singlet/doubletdoublet
Overlap geneRabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1
Upstream geneGpr133, Sfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7
Downstream geneA330070K13Rik, Caln1, Wbscr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193A09.bB6Ng01-193A09.g
ACCGA016109GA016110
length1,187924
definitionB6Ng01-193A09.b B6Ng01-193A09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,658,911 - 130,660,100)(130,775,156 - 130,775,725)
sequence
gaattctgttatctgtagtaaatgtacagagtttggaacctatgttattt
tactaatgctttatgtgtattttattcagtgatactgtatgtattactaa
gtacagccttaccattaaagctttctttatttctattttttgtcttttgt
agttaaggctgatcttgcacatggaaccttcctgcctcagcttcccaagt
tctagtaatataggtgtatctatgatcattgctttttatatcagtgtttt
tacattggccacataattttccaattaaaatattttctagatgtttttac
atattgatagtactgtgaggtattttatacatcttattatcaaagtagtt
gttagagttccatagatttcatgtacacatacagggcttgtttcttaaac
atgggttgttggtgtaagcaggatggtggtggtgcatctcagagcgtggg
aggcagaggcaggcggatctctgaattcatgtacagagagagctcctggg
cagcctgggagaatcagagaaaccctttctcaaaaaacaaagcaaagaaa
gagtagttagtcaatatgaatagtgtttcttcctttgggtcttggctgta
tcctgcccatgtgaaacattaagatccacagagcttttgtttattgtagt
ggcccacatgactgtcagtatgtgaatgttgaatccacgagtaagaactc
taaaggtatgttgggttgtggctcccacttataatgccagcactcagggc
tcttgaggcaagaggattgctatgagtttgatatcagtatggacttcaga
ttcggaccttctcagaaaacccaaacaacgaaaaaaagaagctatttaaa
gtcagctggactatttacaccccctcaggatgaaaggggaatgccattgt
cagcgttaatgtcgtttatgataggtgtgggtaatgctccatgctggtgg
agttgttgtttgtttttgtttgacagtgctgggtctgaatccagagcttg
agtaatttagcaagtgctttatcactgagctgtacccctagccccatccg
atggcttctgttttgcttaattgctggaggttgtgatggccttcctgggt
actgctcctgcataattaaggacagtgaaggaactggaacttttgcctct
gccttgaagtatgcaagtagcacgccttgctcgatgg
gaattccaccgtatgaaatgtatagtctggaagagatgacacaacactac
actggtctggaagtatccactctgcccacctatccaaagcaaccattctg
ttttcttttggacagagccagaaatggaagccaaggccatgtgcagtgag
gaatagcactctgccactgcgctacagccccagtccacgatgacgatgat
tttataatgcgacacaacaagaagtctctggttatttttaaatgcctaga
cgtgaaggctaataaactgaaaacattaattatctgaaaccggcccatca
gctctgccatgcagtctaatgcaggtggaaacccagagctgtgaagtgaa
gtggaaatttaaaggttctcggaaaatccgttgtgctggacagtgttttt
ctggcgcaaacaatggaaggtatttttcctgaagcggacacaaatgaaag
gatgttttgctagcgcaagcacatgaaaggacacatgatgaaggattcct
cactaaccaacacgtgtattggtttgccttacacatgctgttgagttcca
tttgtcatgatgccatgctggtgtgctgatggcttcttgccccttcctca
aacttgggccaattggcagagcaatgtcagctgaggcagactcacatgga
gttctgctaagacagactctcatactgaggcaagacccatgggggacatg
tgatgtttggagggaggataaataggactcagtggaccgtgagaggggct
cgctttgcaacacttcttggtctagcgtcttcactgatctttgcttcact
gaaagagacacagcaagaactcctggtgtccctgccaatcctggtccctc
ctgctgatttggctgaggcctagctgttcctactaggtcttgccaccact
actgctactgctatcccgagacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_130658911_130660100
seq2: B6Ng01-193A09.b_47_1233

seq1  GAATTCTGTTATCTGTAGTAAATGTACAGAGTTTGGAACCTATGTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTATCTGTAGTAAATGTACAGAGTTTGGAACCTATGTTATTT  50

seq1  TACTAATGCTTTATGTGTATTTTATTCAGTGATACTGTATGTATTACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATGCTTTATGTGTATTTTATTCAGTGATACTGTATGTATTACTAA  100

seq1  GTACAGCCTTACCATTAAAGCTTTCTTTATTTCTATTTTTTGTCTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCCTTACCATTAAAGCTTTCTTTATTTCTATTTTTTGTCTTTTGT  150

seq1  AGTTAAGGCTGATCTTGCACATGGAACCTTCCTGCCTCAGCTTCCCAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGGCTGATCTTGCACATGGAACCTTCCTGCCTCAGCTTCCCAAGT  200

seq1  TCTAGTAATATAGGTGTATCTATGATCATTGCTTTTTATATCAGTGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTAATATAGGTGTATCTATGATCATTGCTTTTTATATCAGTGTTTT  250

seq1  TACATTGGCCACATAATTTTCCAATTAAAATATTTTCTAGATGTTTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGGCCACATAATTTTCCAATTAAAATATTTTCTAGATGTTTTTAC  300

seq1  ATATTGATAGTACTGTGAGGTATTTTATACATCTTATTATCAAAGTAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGATAGTACTGTGAGGTATTTTATACATCTTATTATCAAAGTAGTT  350

seq1  GTTAGAGTTCCATAGATTTCATGTACACATACAGGGCTTGTTTCTTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGTTCCATAGATTTCATGTACACATACAGGGCTTGTTTCTTAAAC  400

seq1  ATGGGTTGTTGGTGTAAGCAGGATGGTGGTGGTGCATCTCAGAGCGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTGTTGGTGTAAGCAGGATGGTGGTGGTGCATCTCAGAGCGTGGG  450

seq1  AGGCAGAGGCAGGCGGATCTCTGAATTCATGTACAGAGAGAGCTCCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCAGGCGGATCTCTGAATTCATGTACAGAGAGAGCTCCTGGG  500

seq1  CAGCCTGGGAGAATCAGAGAAACCCTTTCTCAAAAAACAAAGCAAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGGAGAATCAGAGAAACCCTTTCTCAAAAAACAAAGCAAAGAAA  550

seq1  GAGTAGTTAGTCAATATGAATAGTGTTTCTTCCTTTGGGTCTTGGCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTTAGTCAATATGAATAGTGTTTCTTCCTTTGGGTCTTGGCTGTA  600

seq1  TCCTGCCCATGTGAAACATTAAGATCCACAGAGCTTTTGTTTATTGTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCATGTGAAACATTAAGATCCACAGAGCTTTTGTTTATTGTAGT  650

seq1  GGCCCACATGACTGTCAGTATGTGAATGTTGAATCCACGAGTAAGAACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACATGACTGTCAGTATGTGAATGTTGAATCCACGAGTAAGAACTC  700

seq1  TAAAGGTATGTTGGGTTGTGGCTCCCACTTATAATGCCAGCACTCAGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTATGTTGGGTTGTGGCTCCCACTTATAATGCCAGCACTCAGGGC  750

seq1  TCTTGAGGCAAGAGGATTGCTATGAGTTTGATATCAGTATGGACTTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGGCAAGAGGATTGCTATGAGTTTGATATCAGTATGGACTTCAGA  800

seq1  TTCGGACCTTCTCAGAAAACCCAAACAACGAAAAAAAGAAGCTATTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGACCTTCTCAGAAAACCCAAACAACGAAAAAAAGAAGCTATTTAAA  850

seq1  GTCAGCTGGACTATTTACACCCCCTCAGGATG-AAGGGGAATGCCATTGT  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTCAGCTGGACTATTTACACCCCCTCAGGATGAAAGGGGAATGCCATTGT  900

seq1  CAGCGTTAATGTCGTTTATGATAGGTGTGGGTAATGCTCCATGCTGGTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTTAATGTCGTTTATGATAGGTGTGGGTAATGCTCCATGCTGGTGG  950

seq1  AGTTGTTGTTTGTTTTTGTTTTGACAGTGCTGGGTCTTGAATCCAGAGCT  999
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  AGTTGTTGTTTGTTTTTG-TTTGACAGTGCTGGGTC-TGAATCCAGAGCT  998

seq1  TGAGTAATTTAGGCAAGTGCTTTATCACTGAGCTGTACCCCTAGCCCCAT  1049
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAATTTA-GCAAGTGCTTTATCACTGAGCTGTACCCCTAGCCCCAT  1047

seq1  CCGATGGCTTCTTGTTTTGCTTTAATGGCTGGAGG-TGTGAATGGCTTCC  1098
      ||||||||||| |||||||| ||||| |||||||| |||||  | |||||
seq2  CCGATGGCTTC-TGTTTTGC-TTAATTGCTGGAGGTTGTGATGGCCTTCC  1095

seq1  TGGGTACTGCTTCCTGGAAATATTAAGGACAGTGAAGG-ACTGGAACTTT  1147
      |||||||||| ||||| | | ||||||||||||||||| |||||||||||
seq2  TGGGTACTGC-TCCTGCATA-ATTAAGGACAGTGAAGGAACTGGAACTTT  1143

seq1  TG-CTCTGCTTAGAAGTA-GCAAGTGAGCACGCCAAAGTCGATGG  1190
      || |||||| | |||||| |||||| ||||||||    |||||||
seq2  TGCCTCTGCCTTGAAGTATGCAAGT-AGCACGCCTTGCTCGATGG  1187

seq1: chr5_130775156_130775725
seq2: B6Ng01-193A09.g_61_630 (reverse)

seq1  CAGCATGGCATCATGACAAATGGAACTCAACAGCATGTGTAAGGCAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGGCATCATGACAAATGGAACTCAACAGCATGTGTAAGGCAAACC  50

seq1  AATACACGTGTTGGTTAGTGAGGAATCCTTCATCATGTGTCCTTTCATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACGTGTTGGTTAGTGAGGAATCCTTCATCATGTGTCCTTTCATGT  100

seq1  GCTTGCGCTAGCAAAACATCCTTTCATTTGTGTCCGCTTCAGGAAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCGCTAGCAAAACATCCTTTCATTTGTGTCCGCTTCAGGAAAAATA  150

seq1  CCTTCCATTGTTTGCGCCAGAAAAACACTGTCCAGCACAACGGATTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCATTGTTTGCGCCAGAAAAACACTGTCCAGCACAACGGATTTTCC  200

seq1  GAGAACCTTTAAATTTCCACTTCACTTCACAGCTCTGGGTTTCCACCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCTTTAAATTTCCACTTCACTTCACAGCTCTGGGTTTCCACCTGC  250

seq1  ATTAGACTGCATGGCAGAGCTGATGGGCCGGTTTCAGATAATTAATGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACTGCATGGCAGAGCTGATGGGCCGGTTTCAGATAATTAATGTTT  300

seq1  TCAGTTTATTAGCCTTCACGTCTAGGCATTTAAAAATAACCAGAGACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTATTAGCCTTCACGTCTAGGCATTTAAAAATAACCAGAGACTTC  350

seq1  TTGTTGTGTCGCATTATAAAATCATCGTCATCGTGGACTGGGGCTGTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTGTCGCATTATAAAATCATCGTCATCGTGGACTGGGGCTGTAGC  400

seq1  GCAGTGGCAGAGTGCTATTCCTCACTGCACATGGCCTTGGCTTCCATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGCAGAGTGCTATTCCTCACTGCACATGGCCTTGGCTTCCATTTC  450

seq1  TGGCTCTGTCCAAAAGAAAACAGAATGGTTGCTTTGGATAGGTGGGCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGTCCAAAAGAAAACAGAATGGTTGCTTTGGATAGGTGGGCAGA  500

seq1  GTGGATACTTCCAGACCAGTGTAGTGTTGTGTCATCTCTTCCAGACTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATACTTCCAGACCAGTGTAGTGTTGTGTCATCTCTTCCAGACTATA  550

seq1  CATTTCATACGGTGGAATTC  570
      ||||||||||||||||||||
seq2  CATTTCATACGGTGGAATTC  570