BAC Information

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BAC

Clone NameB6Ng01-193G19
Chromosome5 (Build37)
Map Location 59,194,157 - 59,295,058
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041385
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193G19.bB6Ng01-193G19.g
ACCGA016401GA016402
length1,1321,044
definitionB6Ng01-193G19.b B6Ng01-193G19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,194,157 - 59,195,308)(59,294,012 - 59,295,058)
sequence
gaattcttcaacagatgtaataaacagtcaattacctcagtgactggtaa
cacccagtaacctctggaaccaaatctgtccaatgcttcctgaggcagac
atctgaacttaaaagcaagcgttgccctatccaccactgttcaattaatc
aaatgctaattgccttgataagacccacattggctgtctaagtcattaag
ctttatcttgccaaagctgccggtgccaccaaggttttcctcctgcacac
agcatctgtttacagagccttgcagatgacagaagtgtgttactactgga
ttgttgtattttcagacaagcacttgaaatatggatagattaatctgttt
aaaaattggaggagactggcacactcgttttagaagcaaatttttccttt
ttcctctgattgtatttgattaaaaaaaaaaaaatctggaaagcaaattg
actgccctgataatgaaggaatttggctctttatcaaagtgagatactga
ctttgtttctatgggacagaactatttatctctacatgctccacttcaat
ctgagatttttttcctctctaaaagagtcatagatgatggccagcaatta
catgatggtaggttttcctggaaaaaaaaatgccttggatccctaggttc
actcactgacttgctgagtgattcaccttgaagggccattttatttgatg
ttctgcgacccagagccttgacacggctataattcccagagagcctcttg
gcactaggaatctgtcattcacagttgcaatagacaggcttataggatat
taagtcttattcctcttttttcctttctgaaagttgttttattaaataaa
aataacagtaaacacaaaaggcaggcatattcaactttgttttgtacttt
atctagtatttttttaagaaaataatatatgatttaaattaatgtcagaa
agtcattgtgagtagctacttagatacatcatgatcatattaattgacag
tgcatgagtttattgtgctatcgatagtgtctataacagtctcatgaagg
atttattttcttataagagttatatttccgtgaacagttacatgagccat
gcctaacttcctgtttaatgtgcatacatgaa

gaattctctcttagtaatcacccaagactggtgcatggatcacaggtttt
tgaggagctcctcaacaagtgaaatgattcatggttttcttgtgttagtc
aggttttgccttgacactacactgacatatttggggagatagaccctcag
ttaagatattacatccaagagattgtcctgtggacatgcttatgatgtat
tttcttgattgcttttctgatgtgagggagtaaggccatggtggcaggtt
gtatcactgcacacaagtaccttggctatacaagtaatgtagcaagagag
gaagcaaacaagaaagcaatattcctttgagtcatctcggattaagtacc
tgcctccaagttcctgccttggattcctgccttgatttatttttcttatt
tatctcaatgatggactatgatagaaatatgtatgccaaatcaaccagtt
tctccacaaatttgtattggccaatgtttcacaataaaaacagaagccaa
acaaaaaacatggctcctggtgtaattgtttccggctccatttttaattc
tataaaaattttcatagaacttcataataaaacagttttacataatttct
tctcttaacatgtgcctctggtaactcagtctaagattgtgaataaaagc
accggtatccttaggagatggatgaagagaattcagaaacatagcacatc
taattgatttctgtctactgtaatatgctttattttcttcaatctgagcg
tggtgaaaacaattcaaatgactgcaccaatttcttctaatttaatttct
aactgataaatcatttttcattagaaaaaacaccaacttcattaagggaa
gatttaatttaattcatttgggaatatattcattatgagtaggaaagact
cagtagatactaatacatagttttaatctagatatacataaatcatagag
atgggttaggatacatttaaaaatataatataggcaaaataatgttaaca
taccatgatcacacccccccccccaattttttacagttcctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59194157_59195308
seq2: B6Ng01-193G19.b_43_1174

seq1  GAATTCTTCAACAGATGTAATAAACAGTCAATTACCTCAGTGACTGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAACAGATGTAATAAACAGTCAATTACCTCAGTGACTGGTAA  50

seq1  CACCCAGTAACCTCTGGAACCAAATCTGTCCAATGCTTCCTGAGGCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGTAACCTCTGGAACCAAATCTGTCCAATGCTTCCTGAGGCAGAC  100

seq1  ATCTGAACTTAAAAGCAAGCGTTGCCCTATCCACCACTGTTCAATTAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAACTTAAAAGCAAGCGTTGCCCTATCCACCACTGTTCAATTAATC  150

seq1  AAATGCTAATTGCCTTGATAAGACCCACATTGGCTGTCTAAGTCATTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTAATTGCCTTGATAAGACCCACATTGGCTGTCTAAGTCATTAAG  200

seq1  CTTTATCTTGCCAAAGCTGCCGGTGCCACCAAGGTTTTCCTCCTGCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCTTGCCAAAGCTGCCGGTGCCACCAAGGTTTTCCTCCTGCACAC  250

seq1  AGCATCTGTTTACAGAGCCTTGCAGATGACAGAAGTGTGTTACTACTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGTTTACAGAGCCTTGCAGATGACAGAAGTGTGTTACTACTGGA  300

seq1  TTGTTGTATTTTCAGACAAGCACTTGAAATATGGATAGATTAATCTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTATTTTCAGACAAGCACTTGAAATATGGATAGATTAATCTGTTT  350

seq1  AAAAATTGGAGGAGACTGGCACACTCGTTTTAGAAGCAAATTTTTCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGGAGGAGACTGGCACACTCGTTTTAGAAGCAAATTTTTCCTTT  400

seq1  TTCCTCTGATTGTATTTGATTAAAAAAAAAAAAATCTGGAAAGCAAATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGATTGTATTTGATTAAAAAAAAAAAAATCTGGAAAGCAAATTG  450

seq1  ACTGCCCTGATAATGAAGGAATTTGGCTCTTTATCAAAGTGAGATACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCTGATAATGAAGGAATTTGGCTCTTTATCAAAGTGAGATACTGA  500

seq1  CTTTGTTTCTATGGGACAGAACTATTTATCTCTACATGCTCCACTTCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTCTATGGGACAGAACTATTTATCTCTACATGCTCCACTTCAAT  550

seq1  CTGAGATTTTTTTCCTCTCTAAAAGAGTCATAGATGATGGCCAGCAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTTTTTTCCTCTCTAAAAGAGTCATAGATGATGGCCAGCAATTA  600

seq1  CATGATGGTAGGTTTTCCTGGAAAAAAAAATGCCTTGGATCCCTAGGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGGTAGGTTTTCCTGGAAAAAAAAATGCCTTGGATCCCTAGGTTC  650

seq1  ACTCACTGACTTGCTGAGTGATTCACCTTGAAGGGCCATTTTATTTGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTGACTTGCTGAGTGATTCACCTTGAAGGGCCATTTTATTTGATG  700

seq1  TTCTGCGACCCAGAGCCTTGACACGGCTATAATTCCCAGAGAGCCTCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCGACCCAGAGCCTTGACACGGCTATAATTCCCAGAGAGCCTCTTG  750

seq1  GCACTAGGAATCTGTCATTCACAGTTGCAATAGACAGGCTTATAGGATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAGGAATCTGTCATTCACAGTTGCAATAGACAGGCTTATAGGATAT  800

seq1  TAAGTCTTATTCCTCTTTTTTCCTTTCTGAAAGTTGTTTTATTAAATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTTATTCCTCTTTTTTCCTTTCTGAAAGTTGTTTTATTAAATAAA  850

seq1  AATAACAGTAAACACAAAAGGCAGGCATATTCAACTTTGTTTTGTACTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGTAAACACAAAAGGCAGGCATATTCAACTTTGTTTTGTACTTT  900

seq1  ATCTAGTATTTTTTAAGAAAAATAATATATGATTTAAATTAATGTCAGAA  950
      |||||||||||||| |  |||||||||||||||||||||||||||||| |
seq2  ATCTAGTATTTTTTTAAGAAAATAATATATGATTTAAATTAATGTCAG-A  949

seq1  AAGTCATTGTGAGTAGGCTACTTAGATAACATCATGAATCATATTAAAAT  1000
      ||||||||||||||| ||||||||||| |||||||| ||||||||  |||
seq2  AAGTCATTGTGAGTA-GCTACTTAGAT-ACATCATG-ATCATATT--AAT  994

seq1  TGACAGTGCATTGGAGGTTTTAATGGTGCTATCGGAATAGTGTCTATTAA  1050
      |||||||||||  |||   || || |||||||||  |||||||||||  |
seq2  TGACAGTGCAT--GAG---TTTATTGTGCTATCG--ATAGTGTCTAT--A  1035

seq1  ACAGTCTTCATGAAAGATTTATTTTCTTATAAGAGTTATATTTTCGTGAA  1100
      |||||| ||||||| |||||||||||||||||||||||||||| ||||||
seq2  ACAGTC-TCATGAAGGATTTATTTTCTTATAAGAGTTATATTTCCGTGAA  1084

seq1  CATTTACAATGAGCAATGCTTACTTTCCTGTTTTTAATGTGTATACCATG  1150
      || |||| |||||| |||| ||  ||||||  ||||||||| ||| ||||
seq2  CAGTTAC-ATGAGCCATGCCTAACTTCCTG--TTTAATGTGCATA-CATG  1130

seq1  AA  1152
      ||
seq2  AA  1132


seq1: chr5_59294012_59295058
seq2: B6Ng01-193G19.g_65_1108 (reverse)

seq1  TAGA-GAACTTGGTAAAAAAT--GGGGGGGGGGTGTGATCATGGTATTGT  47
      |||| |||||  |||||||||  ||||||||||||||||||||||| |||
seq2  TAGAGGAACT--GTAAAAAATTGGGGGGGGGGGTGTGATCATGGTA-TGT  47

seq1  TAACATTATTTTGCCTATTATTTATATTTTTAATGTTATCCTAACCCATT  97
      ||||||||||||||||||   ||||||||||||   ||||||||||||| 
seq2  TAACATTATTTTGCCTAT--ATTATATTTTTAAATGTATCCTAACCCAT-  94

seq1  CTTCTATGATTTATGTATATCTAGATTAAAACTATGTATTAGTATCTACT  147
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTCTATGATTTATGTATATCTAGATTAAAACTATGTATTAGTATCTACT  143

seq1  GAGTCTTTCCTACTCATAATGAATATATT-CCAAATGAATTAAATTAAAT  196
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAGTCTTTCCTACTCATAATGAATATATTCCCAAATGAATTAAATTAAAT  193

seq1  CTTCCTTTAATGAAGTTGGTGTTTTTTCTAATGAAAAATGATTTATCAGT  246
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTAATGAAGTTGGTGTTTTTTCTAATGAAAAATGATTTATCAGT  243

seq1  TAGAAATTAAATTAGAAGAAATTGGTGCAGTCATTTGAATTGTTTTCACC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTAAATTAGAAGAAATTGGTGCAGTCATTTGAATTGTTTTCACC  293

seq1  ACGCTCAGATTGAAGAAAATAAAGCATATTACAGTAGACAGAAATCAATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCAGATTGAAGAAAATAAAGCATATTACAGTAGACAGAAATCAATT  343

seq1  AGATGTGCTATGTTTCTGAATTCTCTTCATCCATCTCCTAAGGATACCGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGCTATGTTTCTGAATTCTCTTCATCCATCTCCTAAGGATACCGG  393

seq1  TGCTTTTATTCACAATCTTAGACTGAGTTACCAGAGGCACATGTTAAGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTATTCACAATCTTAGACTGAGTTACCAGAGGCACATGTTAAGAG  443

seq1  AAGAAATTATGTAAAACTGTTTTATTATGAAGTTCTATGAAAATTTTTAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTATGTAAAACTGTTTTATTATGAAGTTCTATGAAAATTTTTAT  493

seq1  AGAATTAAAAATGGAGCCGGAAACAATTACACCAGGAGCCATGTTTTTTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAAAAATGGAGCCGGAAACAATTACACCAGGAGCCATGTTTTTTG  543

seq1  TTTGGCTTCTGTTTTTATTGTGAAACATTGGCCAATACAAATTTGTGGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTCTGTTTTTATTGTGAAACATTGGCCAATACAAATTTGTGGAG  593

seq1  AAACTGGTTGATTTGGCATACATATTTCTATCATAGTCCATCATTGAGAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGTTGATTTGGCATACATATTTCTATCATAGTCCATCATTGAGAT  643

seq1  AAATAAGAAAAATAAATCAAGGCAGGAATCCAAGGCAGGAACTTGGAGGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAAAAATAAATCAAGGCAGGAATCCAAGGCAGGAACTTGGAGGC  693

seq1  AGGTACTTAATCCGAGATGACTCAAAGGAATATTGCTTTCTTGTTTGCTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTTAATCCGAGATGACTCAAAGGAATATTGCTTTCTTGTTTGCTT  743

seq1  CCTCTCTTGCTACATTACTTGTATAGCCAAGGTACTTGTGTGCAGTGATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTGCTACATTACTTGTATAGCCAAGGTACTTGTGTGCAGTGATA  793

seq1  CAACCTGCCACCATGGCCTTACTCCCTCACATCAGAAAAGCAATCAAGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGCCACCATGGCCTTACTCCCTCACATCAGAAAAGCAATCAAGAA  843

seq1  AATACATCATAAGCATGTCCACAGGACAATCTCTTGGATGTAATATCTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATCATAAGCATGTCCACAGGACAATCTCTTGGATGTAATATCTTA  893

seq1  ACTGAGGGTCTATCTCCCCAAATATGTCAGTGTAGTGTCAAGGCAAAACC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGGTCTATCTCCCCAAATATGTCAGTGTAGTGTCAAGGCAAAACC  943

seq1  TGACTAACACAAGAAAACCATGAATCATTTCACTTGTTGAGGAGCTCCTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAACACAAGAAAACCATGAATCATTTCACTTGTTGAGGAGCTCCTC  993

seq1  AAAAACCTGTGATCCATGCACCAGTCTTGGGTGATTACTAAGAGAGAATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCTGTGATCCATGCACCAGTCTTGGGTGATTACTAAGAGAGAATT  1043

seq1  C  1047
      |
seq2  C  1044


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