BAC Information

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BAC

Clone NameB6Ng01-193H05
Chromosome5 (Build37)
Map Location 48,653,262 - 48,800,047
singlet/doubletdoublet
Overlap geneSlit2, 4933428G09Rik, Kcnip4
Upstream geneLOC100040865, LOC100040876
Downstream geneLOC100041668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193H05.bB6Ng01-193H05.g
ACCGA016417GA016418
length9091,061
definitionB6Ng01-193H05.b B6Ng01-193H05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,653,262 - 48,654,172)(48,798,984 - 48,800,047)
sequence
gaattcataaatcatctcttaactgtagacttttgtgcacatttgaagtg
agtgtagttacaaaatgtcaaactagcgtctgcagattctgaggttggag
gcacataggtgacctttgctgacagggaagcataagtctgattctagaat
tctgtgtcctgtttaatccccatctgcagttatagaggaattatcttata
atgggactttgttgtttcaaatttaacatggaatctgattaatgagcatg
agttcagagaacagaaacccagctaaagtcacaaaatataataatgttgc
ctttgttttaaaatcatctaagctgtctgttgctttttttcctttgattt
ttttctttagcctgcataccatgagaacatgaatcatcatggtaaccata
cttccgtttaacatctctatcgagacgtacggttgtcaatggagaaaatt
cagagacctgaagagaatcagacaaggaaatcagcacataactagaaatc
tgagctagaaatacttaaaacagaatgagtgcttgaaatacattcagaag
ttatagtggcatagttaaaccctgagcaagcaaacatcacatagagtgaa
tgatgtattccctgttcctttctgttaacaaaacaaaggactgataacat
aagctgtatgactcaatagtgtttttctgttatctaaactttcctggacc
ctcacacaccctttaatattattctctacatattagtattctctacatat
tgggtcgcttctctcccagatggagatgctttctctgcgagtattattca
ggaaaggttaaaattttaaatttagtttcctgtgattctatattaaaatc
agtatttgagtggggaaatagggattagtgatattaagtttgaaaatatt
ctatacttc

gaattccaataaggatcctgacacaccaagtgagatgatggagtgaggct
agagatgagacttgatgggaaaatggagcagaggcagaagtgactgtaac
agcaaagcctgtattggtggttttcaagtattatgtcttgagaaactagc
agaagctaataaagtgaagacaagttgagatgggaaacatgaggcagaat
ctgagtggagactatcaccttgggaataaagagaaaacatctgtagatct
tctggaagatgtaagaatatgagccaggaaagtgagttggaaaaggaaac
agagtccacatctcaggcaggctgccaactaaagaggttaaagactgcgc
tataagagataaggacccctgaggacatttcaacggggtggtttatgtgt
gtgagctgtgctcctgaaacggggagttgcttagaagttatttattcaga
gagtccagacaggagctgatgacaaaccaaactgtagtaaaagctttgag
atgaacacgaacttattaaccataagcttggtagaactgtaactatctga
tatgtttaggagagaaaacaattttggcatggacagcactctgaacacat
atgtgctatgtggaggcaggctgaaggaagaagagtgaatcttcataaaa
tatcaatctatggtccttgtgcagaatttctagaggcaactaaataactt
ctcatgtgtactatatcctcatgaaaaactcaggccatccgtttgaagat
tctggatcagggatttcaatcatcacctcacaaaacttaacccagaaata
tcctaagatggaaagggtagatgatgttagtgattgagatgtgaatcaag
aagtcagacagggcgctgagcatccctagatgcagaagcagcagtttact
aggccaagaaagaaagttccaaagtgtcctagattcccacaataccacct
tctagtggcacttaactcctagaagaactatctctagtactttatcttaa
ttgctagtattagcatagcctcccattgcctatactgtgagagacagaag
tctagcttcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_48653262_48654172
seq2: B6Ng01-193H05.b_44_951

seq1  GAATTCATAAATCATCTCTTAACTGTAGACTTTTGTGCACATTTGAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAATCATCTCTTAACTGTAGACTTTTGTGCACATTTGAAGTG  50

seq1  AGTGTAGTTACAAAATGTCAAACTAGCGTCTGCAGATTCTGAGGTTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGTTACAAAATGTCAAACTAGCGTCTGCAGATTCTGAGGTTGGAG  100

seq1  GCACATAGGTGACCTTTGCTGACAGGGAAGCATAAGTCTGATTCTAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAGGTGACCTTTGCTGACAGGGAAGCATAAGTCTGATTCTAGAAT  150

seq1  TCTGTGTCCTGTTTAATCCCCATCTGCAGTTATAGAGGAATTATCTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCCTGTTTAATCCCCATCTGCAGTTATAGAGGAATTATCTTATA  200

seq1  ATGGGACTTTGTTGTTTCAAATTTAACATGGAATCTGATTAATGAGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACTTTGTTGTTTCAAATTTAACATGGAATCTGATTAATGAGCATG  250

seq1  AGTTCAGAGAACAGAAACCCAGCTAAAGTCACAAAATATAATAATGTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGAGAACAGAAACCCAGCTAAAGTCACAAAATATAATAATGTTGC  300

seq1  CTTTGTTTTAAAATCATCTAAGCTGTCTGTTGCTTTTTTTCCTTTGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTAAAATCATCTAAGCTGTCTGTTGCTTTTTTTCCTTTGATTT  350

seq1  TTTTCTTTAGCCTGCATACCATGAGAACATGAATCATCATGGTAACCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTAGCCTGCATACCATGAGAACATGAATCATCATGGTAACCATA  400

seq1  CTTCCGTTTAACATCTCTATCGAGACGTACGGTTGTCAATGGAGAAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGTTTAACATCTCTATCGAGACGTACGGTTGTCAATGGAGAAAATT  450

seq1  CAGAGACCTGAAGAGAATCAGACAAGGAAATCAGCACATAACTAGAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACCTGAAGAGAATCAGACAAGGAAATCAGCACATAACTAGAAATC  500

seq1  TGAGCTAGAAATACTTAAAACAGAATGAGTGCTTGAAATACATTCAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAGAAATACTTAAAACAGAATGAGTGCTTGAAATACATTCAGAAG  550

seq1  TTATAGTGGCATAGTTAAACCCTGAGCAAGCAAACATCACATAGAGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTGGCATAGTTAAACCCTGAGCAAGCAAACATCACATAGAGTGAA  600

seq1  TGATGTATTCCCTGTTCCTTTCTGTTAACAAAACAAAGGACTGATAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTATTCCCTGTTCCTTTCTGTTAACAAAACAAAGGACTGATAACAT  650

seq1  AAGCTGTATGACTCAATAGTGTTTTTCTGTTATCTAAACTTTCCTGGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTATGACTCAATAGTGTTTTTCTGTTATCTAAACTTTCCTGGACC  700

seq1  CTCACACACCCTTTAATATTATTCTCTACATATTAGTATTCTCTACATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACACCCTTTAATATTATTCTCTACATATTAGTATTCTCTACATAT  750

seq1  TGGGTCGCTTCTCTCCCAGATGGAGATGC-TTCTCTGCGAGTATTATTCA  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGGTCGCTTCTCTCCCAGATGGAGATGCTTTCTCTGCGAGTATTATTCA  800

seq1  GGAAAGGTTAAAATTTTAAAATTTAGTTTCCTGTGATTCTATATTAAAAT  849
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGAAAGGTTAAAATTTT-AAATTTAGTTTCCTGTGATTCTATATTAAAAT  849

seq1  CAGTATTTGAGTGGGGAAATAGGGATTTAGTGATATTAAGTTTTGAAAAT  899
      ||||||||||||||||||||||||| |||||||||||||| |||||||||
seq2  CAGTATTTGAGTGGGGAAATAGGGA-TTAGTGATATTAAG-TTTGAAAAT  897

seq1  AATTCTATACTT  911
       |||||||||||
seq2  -ATTCTATACTT  908


seq1: chr5_48798984_48800047
seq2: B6Ng01-193H05.g_64_1124 (reverse)

seq1  GTGAA-CTAGAACTTCTGTCTCTCACAGTATAGGCATATGGAGGCTATGC  49
      ||||| |||| |||||||||||||||||||||||||   |||||||||||
seq2  GTGAAGCTAG-ACTTCTGTCTCTCACAGTATAGGCAATGGGAGGCTATGC  49

seq1  TAATACTAGCATTATAGATAAAGTACTAAGAGGATAG-TCTTCTAGGAAG  98
      ||||||||||| |  |||||||||||| ||| ||||| ||||||||| ||
seq2  TAATACTAGCAATTAAGATAAAGTACT-AGA-GATAGTTCTTCTAGG-AG  96

seq1  TCTAAGGTGCCACTAGAA-GTGGTATTGTGGGAAATCTGGGACAACCTTG  147
      | ||| |||||||||||| ||||||||||||| ||||| |||||   | |
seq2  T-TAA-GTGCCACTAGAAGGTGGTATTGTGGG-AATCTAGGACACTTTGG  143

seq1  AACTTTCTTTCTTGGCCTAGT-AACTGCTGCTTCTGCATCTA-GGATGCT  195
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  AACTTTCTTTCTTGGCCTAGTAAACTGCTGCTTCTGCATCTAGGGATGCT  193

seq1  CAGCGCCCTGTCCTGACTTCTTGATTCACATCTCAATCACTAACATCATC  245
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCCCTGT-CTGACTTCTTGATTCACATCTCAATCACTAACATCATC  242

seq1  TACCCTTTCCATCTTAGGATATTTCTGGGTTAAGTTTTGTGAGGTGATGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTTCCATCTTAGGATATTTCTGGGTTAAGTTTTGTGAGGTGATGA  292

seq1  TTGAAATCCCTGATCCAGAATCTTCAAACGGATGGCCTGAGTTTTTCATG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATCCCTGATCCAGAATCTTCAAACGGATGGCCTGAGTTTTTCATG  342

seq1  AGGATATAGTACACATGAGAAGTTATTTAGTTGCCTCTAGAAATTCTGCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATAGTACACATGAGAAGTTATTTAGTTGCCTCTAGAAATTCTGCA  392

seq1  CAAGGACCATAGATTGATATTTTATGAAGATTCACTCTTCTTCCTTCAGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACCATAGATTGATATTTTATGAAGATTCACTCTTCTTCCTTCAGC  442

seq1  CTGCCTCCACATAGCACATATGTGTTCAGAGTGCTGTCCATGCCAAAATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCACATAGCACATATGTGTTCAGAGTGCTGTCCATGCCAAAATT  492

seq1  GTTTTCTCTCCTAAACATATCAGATAGTTACAGTTCTACCAAGCTTATGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCTCCTAAACATATCAGATAGTTACAGTTCTACCAAGCTTATGG  542

seq1  TTAATAAGTTCGTGTTCATCTCAAAGCTTTTACTACAGTTTGGTTTGTCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAGTTCGTGTTCATCTCAAAGCTTTTACTACAGTTTGGTTTGTCA  592

seq1  TCAGCTCCTGTCTGGACTCTCTGAATAAATAACTTCTAAGCAACTCCCCG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCTGTCTGGACTCTCTGAATAAATAACTTCTAAGCAACTCCCCG  642

seq1  TTTCAGGAGCACAGCTCACACACATAAACCACCCCGTTGAAATGTCCTCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGAGCACAGCTCACACACATAAACCACCCCGTTGAAATGTCCTCA  692

seq1  GGGGTCCTTATCTCTTATAGCGCAGTCTTTAACCTCTTTAGTTGGCAGCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCCTTATCTCTTATAGCGCAGTCTTTAACCTCTTTAGTTGGCAGCC  742

seq1  TGCCTGAGATGTGGACTCTGTTTCCTTTTCCAACTCACTTTCCTGGCTCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAGATGTGGACTCTGTTTCCTTTTCCAACTCACTTTCCTGGCTCA  792

seq1  TATTCTTACATCTTCCAGAAGATCTACAGATGTTTTCTCTTTATTCCCAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTACATCTTCCAGAAGATCTACAGATGTTTTCTCTTTATTCCCAA  842

seq1  GGTGATAGTCTCCACTCAGATTCTGCCTCATGTTTCCCATCTCAACTTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATAGTCTCCACTCAGATTCTGCCTCATGTTTCCCATCTCAACTTGT  892

seq1  CTTCACTTTATTAGCTTCTGCTAGTTTCTCAAGACATAATACTTGAAAAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTTATTAGCTTCTGCTAGTTTCTCAAGACATAATACTTGAAAAC  942

seq1  CACCAATACAGGCTTTGCTGTTACAGTCACTTCTGCCTCTGCTCCATTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATACAGGCTTTGCTGTTACAGTCACTTCTGCCTCTGCTCCATTTT  992

seq1  CCCATCAAGTCTCATCTCTAGCCTCACTCCATCATCTCACTTGGTGTGTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCAAGTCTCATCTCTAGCCTCACTCCATCATCTCACTTGGTGTGTC  1042

seq1  AGGATCCTTATTGGAATTC  1064
      |||||||||||||||||||
seq2  AGGATCCTTATTGGAATTC  1061


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