BAC Information

Click to search

BAC

Clone NameB6Ng01-193K11
Chromosome5 (Build37)
Map Location 110,103,677 - 110,104,431
singlet/doubletsinglet
Overlap genenone
Upstream geneIdua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831
Downstream geneLOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193K11.bB6Ng01-193K11.g
ACCGA016566GA016567
length7551,170
definitionB6Ng01-193K11.b B6Ng01-193K11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctacatcttgatcagaaggcagccagaagactcttctgccctggg
tagagcttaagcataggatctccgagtctacccccacagtgacagacttt
ctcaaatgccacatctactccagtattactcaagtaatactgccacttgc
catgggccatgtatatttaaatcaccacaccttttaagatcactgtaaag
gctttaccacattggctatcttcatagggttattgtttaatatatgttct
tttatgtaatcggaggtgactcaattgtaaataggctttaccatattgtc
tacatttataaggtttctctccagcatgaattctttcatgttatcgaagt
tgactatgagggacaaagaatttactacatcgcttatcttcataaggttt
ctcttcagtatatattcttttatgcattcgaagattacaatggtatataa
aggctttaacacattcattccatttgtaaggtttctctccattatgaaat
ttttcatgtgtttgaagttgaccatgaaaggcaaagaatttactacattg
cttatattcaaagggattctcttcagtatgtattcttttatgtacttgga
aagaactttaatatgcaaaggctttaccacactggttatatttgtaagat
ttctctccagtatgttaatttatgcatcgtgagatgactgtgttgtacaa
agcgttaacaacattgattacattcatagggcttctctccagtatgtggg
ttttt
gaattcttatggcatcatcattaagacttaaatcatctaattgtctatat
aacatcactacaagagagtacatcttcgtggatctgtagagatctgctcc
agaggtgtgtgctactacttgtaattgttataaacctttaataataaatg
gaaaagtgccgcagaccctctgggcccctttgcgtggaacgggtctctag
acgcaggtgggcaaagcttaggatgaattgacagacagatgcacacagga
gaggttgtgtagaatctgaatgtatttgtcaggttgagcatcaaactttt
tatagtacagagaatacaaggggttggaagtcacatcaggcaaggtacag
agaagttaccaggtacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaa
tgacttcaacaggaattacagaaactaggtaaatgtttacaataaagata
aagcagtcctgcctagactcagcttaatgacaggcaagaatttcacactt
tagtgttaatacctttgaaccttgtgaaggctaaattcttaacttagctg
gagaatctccatttgtcaggagagtataccaacttgcttttagtatgcaa
tgaagcctgtactaaagatttccatctcagtgagattccctggctctttc
tgcagaccagttgagccactggctctgtctattgtaatgcttaattagtt
actgaataggttaacttccttgctgccttctcacaggattctaagctctg
ctgcttctgggatcttggaacactgggggaaactaactataacagaatta
atcttaagaggcatttataataaaatattaacagagagctctttagatcc
atacaccagactaatgtgggaattagagtatgagaatgagaacgccaaaa
cttccaggaggagagcttccctgaaacttcttttgcctcatggagtggct
tttaaggcatcactgccctgtcaagctgactagacccgaagtgcccgtgc
agaaaagcatattaatagcagaatcttacctaaaatgaagttcctctcac
agcccttggattaaatagatggcacatgtccagattattaataatcccag
cagtcagcattcagaaatgatcctgcctagtattagcctgtccatatgcc
ctctgacagagacctttaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_110103677_110104431
seq2: B6Ng01-193K11.b_44_798

seq1  GAATTCTACATCTTGATCAGAAGGCAGCCAGAAGACTCTTCTGCCCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATCTTGATCAGAAGGCAGCCAGAAGACTCTTCTGCCCTGGG  50

seq1  TAGAGCTTAAGCATAGGATCTCCGAGTCTACCCCCACAGTGACAGACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTTAAGCATAGGATCTCCGAGTCTACCCCCACAGTGACAGACTTT  100

seq1  CTCAAATGCCACATCTACTCCAGTATTACTCAAGTAATACTGCCACTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATGCCACATCTACTCCAGTATTACTCAAGTAATACTGCCACTTGC  150

seq1  CATGGGCCATGTATATTTAAATCACCACACCTTTTAAGATCACTGTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCCATGTATATTTAAATCACCACACCTTTTAAGATCACTGTAAAG  200

seq1  GCTTTACCACATTGGCTATCTTCATAGGGTTATTGTTTAATATATGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACCACATTGGCTATCTTCATAGGGTTATTGTTTAATATATGTTCT  250

seq1  TTTATGTAATCGGAGGTGACTCAATTGTAAATAGGCTTTACCATATTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTAATCGGAGGTGACTCAATTGTAAATAGGCTTTACCATATTGTC  300

seq1  TACATTTATAAGGTTTCTCTCCAGCATGAATTCTTTCATGTTATCGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTATAAGGTTTCTCTCCAGCATGAATTCTTTCATGTTATCGAAGT  350

seq1  TGACTATGAGGGACAAAGAATTTACTACATCGCTTATCTTCATAAGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATGAGGGACAAAGAATTTACTACATCGCTTATCTTCATAAGGTTT  400

seq1  CTCTTCAGTATATATTCTTTTATGCATTCGAAGATTACAATGGTATATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGTATATATTCTTTTATGCATTCGAAGATTACAATGGTATATAA  450

seq1  AGGCTTTAACACATTCATTCCATTTGTAAGGTTTCTCTCCATTATGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTAACACATTCATTCCATTTGTAAGGTTTCTCTCCATTATGAAAT  500

seq1  TTTTCATGTGTTTGAAGTTGACCATGAAAGGCAAAGAATTTACTACATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGTGTTTGAAGTTGACCATGAAAGGCAAAGAATTTACTACATTG  550

seq1  CTTATATTCAAAGGGATTCTCTTCAGTATGTATTCTTTTATGTACTTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATTCAAAGGGATTCTCTTCAGTATGTATTCTTTTATGTACTTGGA  600

seq1  AAGAACTTTAATATGCAAAGGCTTTACCACACTGGTTATATTTGTAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTTTAATATGCAAAGGCTTTACCACACTGGTTATATTTGTAAGAT  650

seq1  TTCTCTCCAGTATGTTAATTTATGCATCGTGAGATGACTGTGTTGTACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCAGTATGTTAATTTATGCATCGTGAGATGACTGTGTTGTACAA  700

seq1  AGCGTTAACAACATTGATTACATTCATAGGGCTTCTCTCCAGTATGTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTAACAACATTGATTACATTCATAGGGCTTCTCTCCAGTATGTGGG  750

seq1  TTTTT  755
      |||||
seq2  TTTTT  755