BAC Information

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BAC

Clone NameB6Ng01-194G06
Chromosome5 (Build37)
Map Location 137,746,310 - 137,864,797
singlet/doubletdoublet
Overlap geneArs2, Trip6, Slc12a9, Ephb4, Zan
Upstream geneCutl1, Mylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik
Downstream geneEG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194G06.bB6Ng01-194G06.g
ACCGA017099GA017100
length8001,140
definitionB6Ng01-194G06.b B6Ng01-194G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,864,259 - 137,864,797)(137,746,310 - 137,747,449)
sequence
gaattcctacaacccgtgtaaaccacggcagtctgcctctaattccacag
gctcctattgggatttggggaacagggacgggagaacccccagaaactta
agggctagatactcctgtgtgggcagcagtgaagaacaggaaaggggcga
gagcgctgtagaaagtgaggaccaacacctgaggttttcctctggcttct
acagatacatgcactcctatttataaccatgccagagaaaacacaaacat
gcacatgcacgcatacatacatacaaacatgtgttcacatacacacgtgc
gcatacatgtacacactcacatttgttctaaaaactagtattgtactgag
catggtagcatattccttttttctttttttaagtccgtttgtttatttcc
tttacatccatatcttcatttcccctccctcctcccctctcagttctttc
cccctcccctcccctcccctcccctcccaccatccattccttctcccttt
ctcttcaaaaaaggggaggcctcccacaggtattactcagcctcagcata
tcaagttgcagtagactaggtgcatcttcacctattgagactaggtgagc
agcccagtgagaggaaaggatccaaagacaggtgacagaggcagagacag
cccctgctcttacttgtttaggaatcctacatgacgaccaagctacacaa
ctgttatatatgatggctcattttcttttaagcccagcacttaagaggca
gaggcagagtcacaggcacaggcacagacacgcagatacagatagacaca

gaattccctagaaatccagctaagtgtctctttcctgtggctctccaaag
cactacatagatggccatcttctgctcctcagaacttaagttcctttgca
atgatcatgcctacttgtgacatgtaaccaaagccactttgacctctgaa
agacttcatctagcttcagactcagaaaagcaaatttgattttctttttt
cttaaagaagcactaaggtgagctgggcatggtggctcacccttctattt
ccagccctgaagaggcttaaggcaggagtgttatgttccaggtcagctta
ttctacgtgaggccctttctcaaaacctaaagggcaagggggctaagaga
gatggctctcagagttcaaagaagcaaggctcggctcctaggagccacac
agcagctcacatccttctgtcagttccagctctaaggatacaacactgtt
ctggcttcctacagctatcaggcacagcatgaatgtggtgcacagaaatc
acgtaggcaaaacacttatacattaaaaaaacaaaaaccacagtgccgca
cacctttaaccccagcactcgggaggcagaggcagaggcagaggcaggta
gatctcttgagttcgaggccagtctggtctacagagtgagttccaggaca
gtcaaggctgtacagagaaactctgtctcaaaaaacataccaaaagctaa
ataattaatttttgataacgtgctggagaactgactcagtggttaagggt
tcttgctaatcctacaagggacccatgtgcggctcctcttagcacacgtg
gcaagccactcacagatgcttgttcctctagctgtaggccccataaatca
cactcatttgcatataccatccacacactctcacaatcacacccacacta
ggcttcctcttttccaggctttcccttcatttcatacttgttcgtgaaag
ggaagtctccaccatgtagccctggctggtctcaacctcttaattctatc
tcaaagtcatttcaaattcctctaaagaaactgaaagatgactcagcagg
tagagcactggcttgcttatttcaggtcatgagtcaattccagtcaccaa
ctacaggaaccgatgcctatttctgtcatgcagattgtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_137864259_137864797
seq2: B6Ng01-194G06.b_300_842 (reverse)

seq1  TGTGTCTATCTGTATCTGCGTGTCTGTGCCTGTGCCTGTGACTCTGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTATCTGTATCTGCGTGTCTGTGCCTGTGCCTGTGACTCTGCCTC  50

seq1  TGCCTCCTGAGTGCTGGGCTTAAA--GAAATGAGCCATCATATATAACAG  98
      |||||| | |||||||||||||||   |||||||||||||||||||||||
seq2  TGCCTCTTAAGTGCTGGGCTTAAAAGAAAATGAGCCATCATATATAACAG  100

seq1  TTGTGTAGCTTGGTCGTCATGTAGGATTCCTAA--CAGTAAGAGCAGGGG  146
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  TTGTGTAGCTTGGTCGTCATGTAGGATTCCTAAACAAGTAAGAGCAGGGG  150

seq1  CTGTCTCTGCCTCTGTCACCTGTCTTTGGATCCTTTCCTCTCACTGGGCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGCCTCTGTCACCTGTCTTTGGATCCTTTCCTCTCACTGGGCT  200

seq1  GCTCACCTAGTCTCAATAGGTGAAGATGCACCTAGTCTACTGCAACTTGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCTAGTCTCAATAGGTGAAGATGCACCTAGTCTACTGCAACTTGA  250

seq1  TATGCTGAGGCTGAGTAATACCTGTGGGAGGCCTCCCCTTTTTTGAAGAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGAGGCTGAGTAATACCTGTGGGAGGCCTCCCCTTTTTTGAAGAG  300

seq1  AAAGGGAGAAGGAATGGATGGTGGGAGGGGAGGGGAGGGGAGGGGAGGGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGAAGGAATGGATGGTGGGAGGGGAGGGGAGGGGAGGGGAGGGG  350

seq1  GAAAGAACTGAGAGGGGAGGAGGGAGGGGAAATGAAGATATGGATGTAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACTGAGAGGGGAGGAGGGAGGGGAAATGAAGATATGGATGTAAA  400

seq1  GGAAATAAACAAACGGACTTAAAAAAAGAAAAAAGGAATATGCTACCATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAACAAACGGACTTAAAAAAAGAAAAAAGGAATATGCTACCATG  450

seq1  CTCAGTACAATACTAGTTTTTAGAACAAATGTGAGTGTGTACATGTATGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTACAATACTAGTTTTTAGAACAAATGTGAGTGTGTACATGTATGC  500

seq1  GCACGTGTGTATGTGAACACATGTTTGTATGTATGTATGCGTG  539
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTGTGTATGTGAACACATGTTTGTATGTATGTATGCGTG  543

seq1: chr5_137746310_137747449
seq2: B6Ng01-194G06.g_66_1205

seq1  GAATTCCCTAGAAATCCAGCTAAGTGTCTCTTTCCTGTGGCTCTCCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAGAAATCCAGCTAAGTGTCTCTTTCCTGTGGCTCTCCAAAG  50

seq1  CACTACATAGATGGCCATCTTCTGCTCCTCAGAACTTAAGTTCCTTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACATAGATGGCCATCTTCTGCTCCTCAGAACTTAAGTTCCTTTGCA  100

seq1  ATGATCATGCCTACTTGTGACATGTAACCAAAGCCACTTTGACCTCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCATGCCTACTTGTGACATGTAACCAAAGCCACTTTGACCTCTGAA  150

seq1  AGACTTCATCTAGCTTCAGACTCAGAAAAGCAAATTTGATTTTCTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCATCTAGCTTCAGACTCAGAAAAGCAAATTTGATTTTCTTTTTT  200

seq1  CTTAAAGAAGCACTAAGGTGAGCTGGGCATGGTGGCTCACCCTTCTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGAAGCACTAAGGTGAGCTGGGCATGGTGGCTCACCCTTCTATTT  250

seq1  CCAGCCCTGAAGAGGCTTAAGGCAGGAGTGTTATGTTCCAGGTCAGCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTGAAGAGGCTTAAGGCAGGAGTGTTATGTTCCAGGTCAGCTTA  300

seq1  TTCTACGTGAGGCCCTTTCTCAAAACCTAAAGGGCAAGGGGGCTAAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACGTGAGGCCCTTTCTCAAAACCTAAAGGGCAAGGGGGCTAAGAGA  350

seq1  GATGGCTCTCAGAGTTCAAAGAAGCAAGGCTCGGCTCCTAGGAGCCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCTCAGAGTTCAAAGAAGCAAGGCTCGGCTCCTAGGAGCCACAC  400

seq1  AGCAGCTCACATCCTTCTGTCAGTTCCAGCTCTAAGGATACAACACTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTCACATCCTTCTGTCAGTTCCAGCTCTAAGGATACAACACTGTT  450

seq1  CTGGCTTCCTACAGCTATCAGGCACAGCATGAATGTGGTGCACAGAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCCTACAGCTATCAGGCACAGCATGAATGTGGTGCACAGAAATC  500

seq1  ACGTAGGCAAAACACTTATACATTAAAAAAACAAAAACCACAGTGCCGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAGGCAAAACACTTATACATTAAAAAAACAAAAACCACAGTGCCGCA  550

seq1  CACCTTTAACCCCAGCACTCGGGAGGCAGAGGCAGAGGCAGAGGCAGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTAACCCCAGCACTCGGGAGGCAGAGGCAGAGGCAGAGGCAGGTA  600

seq1  GATCTCTTGAGTTCGAGGCCAGTCTGGTCTACAGAGTGAGTTCCAGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTTGAGTTCGAGGCCAGTCTGGTCTACAGAGTGAGTTCCAGGACA  650

seq1  GTCAAGGCTGTACAGAGAAACTCTGTCTCAAAAAACATACCAAAAGCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGCTGTACAGAGAAACTCTGTCTCAAAAAACATACCAAAAGCTAA  700

seq1  ATAATTAATTTTTGATAACGTGCTGGAGAACTGACTCAGTGGTTAAGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAATTTTTGATAACGTGCTGGAGAACTGACTCAGTGGTTAAGGGT  750

seq1  TCTTGCTAATCCTACAAGGGACCCATGTGCGGCTCCTCTTAGCACACGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTAATCCTACAAGGGACCCATGTGCGGCTCCTCTTAGCACACGTG  800

seq1  GCAAGCCACTCACAGATGCTTGTTCCTCTAGCTGTAGGCCCCATAAATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCACTCACAGATGCTTGTTCCTCTAGCTGTAGGCCCCATAAATCA  850

seq1  CACTCATTTGCATATACCATCCACACACTCTCACAATCACACCCACACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATTTGCATATACCATCCACACACTCTCACAATCACACCCACACTA  900

seq1  GGCTTCCTCTTTTCCAGGCTTTCCCTTCATTTCATACTTGTTTCGTGAAA  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGCTTCCTCTTTTCCAGGCTTTCCCTTCATTTCATACTTG-TTCGTGAAA  949

seq1  GGG-AGTCT-CACCATGTAGCCCTGGCTGGTCTCAACCTCTTAAATTCTA  998
      ||| ||||| |||||||||||||||||||||||||||||||| |||||||
seq2  GGGAAGTCTCCACCATGTAGCCCTGGCTGGTCTCAACCTCTT-AATTCTA  998

seq1  TCTCAAAGTCATTTCAAATCCCTCTAAAGAAACTGAGAGATGACTCAGCA  1048
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  TCTCAAAGTCATTTCAAATTCCTCTAAAGAAACTGAAAGATGACTCAGCA  1048

seq1  GTTAAGAGCACTGGC-TGCTTA-TCCAGGTCATGAGTTCAAATCCCAGCA  1096
      | | ||||||||||| |||||| | ||||||||||| |||| |||   ||
seq2  GGT-AGAGCACTGGCTTGCTTATTTCAGGTCATGAG-TCAATTCCAGTCA  1096

seq1  ACAACTACAGGGACCAGATGCCCTATTCTGTCATGCAGA-TGTAC  1140
       |||||||||| ||| ||||||   |||||||||||||| |||||
seq2  CCAACTACAGGAACC-GATGCCTATTTCTGTCATGCAGATTGTAC  1140