BAC Information

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BAC

Clone NameB6Ng01-194K18
Chromosome5 (Build37)
Map Location 87,734,013 - 87,734,866
singlet/doubletsinglet
Overlap geneLOC665468
Upstream geneTmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37
Downstream geneUgt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194K18.bB6Ng01-194K18.g
ACCGA017302GA017303
length1,199946
definitionB6Ng01-194K18.b B6Ng01-194K18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctactaaactttcaaagtagagctaatgccaatacttttcaaact
agtccatactttagaaacataaagaacaactttagcaaactcactctgtg
agaccatagtcaccttgatacctaaccacacaaagattcaacaaagaaaa
ataatttcagatcaatctcccttatgaacattgatgaaaaacaccaaata
aaatacaaactgaatcaaagaatgtatcaaagacatcatccaccataatc
aagtaggcttcaccctaggaaagcaggggcggttcaatatatgaaaattc
ctcaaagtaacccacaatataaacaaactgaaacaaaaaaaaccaggatc
atccctttagatcacaaaaaaagcatttaacgaaacccaacacctcttca
ggttaaaagtagtggagagatcatggatttaaggttcatacctaatcaga
agaaaggtaatcacagcatgcaaatagtcaccaataaattaaatggaaag
aaacttaaagcgattccactaaaattaggaacaagacaaggttgtgtact
ttgtcctcatctctccaatatagctctagatggtctagctagagcaataa
gacaactaaaggagatcaaggggatacaaatcagaaagaaagaagtcaaa
gtattgcttttcacagatgatatgttatacataagtgaccccaaaaattc
taccatagaatcttacagttgataaataccttcagcaaaatggctggaca
caaagttaagtcacaaacaaacaaacaaacaactcagccaccctctttta
tataatggtcccacacatctatggacacttgatttttgacaaagaagcca
aatatatacaatggaaaaaggagagcatcttaagaagtggtactctccta
actgaatgtctgcatgtagaagaatgcaaaaagaaacatatatatttccc
tgtacaacactcaggttcaagtggatcaaagatcctcattataaaaccaa
atacactaaatctaataagaaaaagaaataggggataagtcttgacctca
tcagtacaggagatgctctgaacagaacacaaatgctcagactctaggtt
aagataataatggatctcatgactgaaaatttctgtagcagaccatcata
ggacaatgacgctaacatctgacagaggcttaatgttgtgaaaaatact
gaattctcagttctaaagccacgatgtcaccacaaggaaatattgggtct
gataacagtactttgaacatttctttctgcatcttaaccattagcttttc
attcttaagaacaccatcacagatacctctggacaccacgtggaactcct
caatgactttagccatttccttattgaagtctagatagttgaaggggatg
gcctgttttccagccaggtaaaaaaaaaaaaaaaagtccttgatcacact
ttcaattttttccttgccaaaggacactggatatatttcgaatgtcagag
atgggctgatggatgatgaaaagggtcccagaggccacaaggacagtcac
attatgtcccgtgctatttcctcgccagcaagaaagcacacagaacacaa
gaatccttctgcagcccacattactcctagcccatgtgcaccataacttg
ttctttgtttaggtggcataaggcacttcggaagccggcgccatcttgtg
atggcaaatgttatcgaggctctccacatctccccctttatgttttatta
aaatgcaagccactctttaatggatgaagatagaggttgaatccctagta
agatgagtaagagcgccatgtacagaacaaggtccttaggctcctttttc
caggatcgtcctgacctgcactcgtgccgtttctccgaggggagggacac
ttggacactcaaccctcatgcaaatcgacttgtcttctaggagtgcccaa
aactctgagcgactcctatgtggttcttagcccaacaatccataagagtc
aaagacctactcactcgtctctgtgcaatgagtctaacatctaggggtgt
aagagctgagtagtttagtgcttgtgaggtcattttagtatgggataagc
agagttcagggaggtgccttgctccatggcagcaagtgcttgagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87734013_87734866
seq2: B6Ng01-194K18.g_66_919

seq1  GAATTCTCAGTTCTAAAGCCACGATGTCACCACAAGGAAATATTGGGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTTCTAAAGCCACGATGTCACCACAAGGAAATATTGGGTCT  50

seq1  GATAACAGTACTTTGAACATTTCTTTCTGCATCTTAACCATTAGCTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACAGTACTTTGAACATTTCTTTCTGCATCTTAACCATTAGCTTTTC  100

seq1  ATTCTTAAGAACACCATCACAGATACCTCTGGACACCACGTGGAACTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAAGAACACCATCACAGATACCTCTGGACACCACGTGGAACTCCT  150

seq1  CAATGACTTTAGCCATTTCCTTATTGAAGTCTAGATAGTTGAAGGGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACTTTAGCCATTTCCTTATTGAAGTCTAGATAGTTGAAGGGGATG  200

seq1  GCCTGTTTTCCAGCCAGGTAAAAAAAAAAAAAAAAGTCCTTGATCACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTTTCCAGCCAGGTAAAAAAAAAAAAAAAAGTCCTTGATCACACT  250

seq1  TTCAATTTTTTCCTTGCCAAAGGACACTGGATATATTTCGAATGTCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTTTTCCTTGCCAAAGGACACTGGATATATTTCGAATGTCAGAG  300

seq1  ATGGGCTGATGGATGATGAAAAGGGTCCCAGAGGCCACAAGGACAGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGATGGATGATGAAAAGGGTCCCAGAGGCCACAAGGACAGTCAC  350

seq1  ATTATGTCCCGTGCTATTTCCTCGCCAGCAAGAAAGCACACAGAACACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTCCCGTGCTATTTCCTCGCCAGCAAGAAAGCACACAGAACACAA  400

seq1  GAATCCTTCTGCAGCCCACATTACTCCTAGCCCATGTGCACCATAACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTTCTGCAGCCCACATTACTCCTAGCCCATGTGCACCATAACTTG  450

seq1  TTCTTTGTTTAGGTGGCATAAGGCACTTCGGAAGCCGGCGCCATCTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTTTAGGTGGCATAAGGCACTTCGGAAGCCGGCGCCATCTTGTG  500

seq1  ATGGCAAATGTTATCGAGGCTCTCCACATCTCCCCCTTTATGTTTTATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAATGTTATCGAGGCTCTCCACATCTCCCCCTTTATGTTTTATTA  550

seq1  AAATGCAAGCCACTCTTTAATGGATGAAGATAGAGGTTGAATCCCTAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAAGCCACTCTTTAATGGATGAAGATAGAGGTTGAATCCCTAGTA  600

seq1  AGATGAGTAAGAGCGCCATGTACAGAACAAGGTCCTTAGGCTCCTTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGTAAGAGCGCCATGTACAGAACAAGGTCCTTAGGCTCCTTTTTC  650

seq1  CAGGATCGTCCTGACCTGCACTCGTGCCGTTTCTCCGAGGGGAGGGACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCGTCCTGACCTGCACTCGTGCCGTTTCTCCGAGGGGAGGGACAC  700

seq1  TTGGACACTCAACCCTCATGCAAATCGACTTGTCTTCTAGGAGTGCCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACACTCAACCCTCATGCAAATCGACTTGTCTTCTAGGAGTGCCCAA  750

seq1  AACTCTGAGCGACTCCTATGTGGTTCTTAGCCCAACAATCCATAAGAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGAGCGACTCCTATGTGGTTCTTAGCCCAACAATCCATAAGAGTC  800

seq1  AAAGACCTACTCACTCGTCTCTGTGCAATGAGTCTAACATCTAGGGGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCTACTCACTCGTCTCTGTGCAATGAGTCTAACATCTAGGGGTGT  850

seq1  AAGA  854
      ||||
seq2  AAGA  854