BAC Information

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BAC

Clone NameB6Ng01-194L19
Chromosome5 (Build37)
Map Location 115,089,988 - 115,235,251
singlet/doubletdoublet
Overlap geneTrpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a
Upstream geneCmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022
Downstream gene1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194L19.bB6Ng01-194L19.g
ACCGA017350GA017351
length994399
definitionB6Ng01-194L19.b B6Ng01-194L19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,089,988 - 115,090,951)(115,234,847 - 115,235,251)
sequence
gaattccgtaacgtggtgaaggatgcaggagtccagactctacccaatga
tcttctgtgtgtttggcccaaagagatacgcaaaccggggaagaggatta
cccaagcagagcagacccctccccctgcccactggtgcggctcaccccgg
aactcctcatcagtcaggcgcttcttgtgggtcaacaagaaggagagcag
tccatctaggtccgcagtggagccccgggacacaatgtcaaagaggatgg
gccgattgaagactttgaggatggggggtggctggggtgcaggagctttg
gggctctgtggctgcttcctagaagggaaaaaagaaggataccaggagtt
tagcctctgcctgcactgtgctccctcacctaaggtagtcagaggttggg
ggaaatgaaacccaagggactaaagaatactatgggatgctttgcccagg
aagaggtaagctggcctactgtgtgttgggcagaaaaacaggaaaaggat
gcaagcctgcacatcctctagcccacccacctcccccctccatctaacca
ctcactcactcagtcacctatccacccacccatccatccatctgtccacc
cacccacccacccatccatccatctatccactcacccacccatccatcca
tctacccactcatcacccatccatccatccctctattcacccactcaccc
ctccccccactcaccccctccctccatcttttatgctcatctgttcatcc
tttccacctcaccactcgctgcctacccccttcatccctctcacctgcct
attcatcttcccccgtcctccatctaacattttactgaacacctttgtgt
gtgagagacagggtcttgtgttcacccagaacttggttttgttaagagac
attgccaacccaaactgatcttggattgtcccacccttggcctccttgaa
atgatggggacgtcaatgcaagccaactatgtccttgcctttat
cagatgcccaggagcagcagcagaggacacagcaggcctcactgagcggg
agtgagacctgtcggacacgcccgtgaacatgcgtgtacaggaatcggag
aggacacacatcgtttctcaacatacactgggtctgcggtcctccctctt
ccccttggctccccagagccaagtggcccagtctgatggtgtatcagtgt
cctggctctgcctgtgctgcacaactgcaagttcttccaaggacacggtg
aacaggagtctttctgagcgccagccggtccttgggaaagaaaggggctt
tgccttgacagtccagttgtttaggtacaaaccatagtcttcaaacaatc
gcctcacaggcctgaggaaggaagttgagcgggacgggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_115089988_115090951
seq2: B6Ng01-194L19.b_49_1029

seq1  GAATTCCGTAACGTGGTGAAGGATGCAGGAGTCCAGACTCTACCCAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTAACGTGGTGAAGGATGCAGGAGTCCAGACTCTACCCAATGA  50

seq1  TCTTCTGTGTGTTTGGCCCAAAGAGATACGCAAACCGGGGAAGAGGATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTGTGTTTGGCCCAAAGAGATACGCAAACCGGGGAAGAGGATTA  100

seq1  CCCAAGCAGAGCAGACCCCTCCCCCTGCCCACTGGTGCGGCTCACCCCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCAGAGCAGACCCCTCCCCCTGCCCACTGGTGCGGCTCACCCCGG  150

seq1  AACTCCTCATCAGTCAGGCGCTTCTTGTGGGTCAACAAGAAGGAGAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTCATCAGTCAGGCGCTTCTTGTGGGTCAACAAGAAGGAGAGCAG  200

seq1  TCCATCTAGGTCCGCAGTGGAGCCCCGGGACACAATGTCAAAGAGGATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTAGGTCCGCAGTGGAGCCCCGGGACACAATGTCAAAGAGGATGG  250

seq1  GCCGATTGAAGACTTTGAGGATGGGGGGTGGCTGGGGTGCAGGAGCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGATTGAAGACTTTGAGGATGGGGGGTGGCTGGGGTGCAGGAGCTTTG  300

seq1  GGGCTCTGTGGCTGCTTCCTAGAAGGGAAAAAAGAAGGATACCAGGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTGTGGCTGCTTCCTAGAAGGGAAAAAAGAAGGATACCAGGAGTT  350

seq1  TAGCCTCTGCCTGCACTGTGCTCCCTCACCTAAGGTAGTCAGAGGTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCTGCCTGCACTGTGCTCCCTCACCTAAGGTAGTCAGAGGTTGGG  400

seq1  GGAAATGAAACCCAAGGGACTAAAGAATACTATGGGATGCTTTGCCCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGAAACCCAAGGGACTAAAGAATACTATGGGATGCTTTGCCCAGG  450

seq1  AAGAGGTAAGCTGGCCTACTGTGTGTTGGGCAGAAAAACAGGAAAAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTAAGCTGGCCTACTGTGTGTTGGGCAGAAAAACAGGAAAAGGAT  500

seq1  GCAAGCCTGCACATCCTCTAGCCCACCCACCTCCCCCCTCCATCTAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCTGCACATCCTCTAGCCCACCCACCTCCCCCCTCCATCTAACCA  550

seq1  CTCACTCACTCAGTCACCTATCCACCCACCCATCCATCCATCTGTCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCACTCAGTCACCTATCCACCCACCCATCCATCCATCTGTCCACC  600

seq1  CACCCACCCACCCATCCATCCATCTATCCACTCACCCACCCATCCATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCCACCCATCCATCCATCTATCCACTCACCCACCCATCCATCCA  650

seq1  TCTACCCACTCATCACCCATCCATCCATCCCTCTATTCACCCACTCACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCACTCATCACCCATCCATCCATCCCTCTATTCACCCACTCACCC  700

seq1  CTCCCCCCACTCA-CCCCTCCCTCCATC-TTTATGCTCATCTGTTCATCC  748
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  CTCCCCCCACTCACCCCCTCCCTCCATCTTTTATGCTCATCTGTTCATCC  750

seq1  -TTCCACCTCACCACTCGCTGCCTACCCCCTTCATCCCTCTCACCTGCCT  797
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACCTCACCACTCGCTGCCTACCCCCTTCATCCCTCTCACCTGCCT  800

seq1  ATTCATCTT-CCCCGTCCTCCATCTAACA-TTTACTGAACACCTTTGTGT  845
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  ATTCATCTTCCCCCGTCCTCCATCTAACATTTTACTGAACACCTTTGTGT  850

seq1  GTGAGAGACAGGGTCTTGTG-TCACCCAGA--CTGGCTTTG-TAAGGGAC  891
      |||||||||||||||||||| |||||||||   ||| |||| |||| |||
seq2  GTGAGAGACAGGGTCTTGTGTTCACCCAGAACTTGGTTTTGTTAAGAGAC  900

seq1  AT--GCAACCCAAACTGATCTT-GAATGTCCCA-CCTTGGCCT-CTTG-A  935
      ||   ||||||||||||||||| || ||||||| ||||||||| |||| |
seq2  ATTGCCAACCCAAACTGATCTTGGATTGTCCCACCCTTGGCCTCCTTGAA  950

seq1  ATGAT-GGGACGTCAATGCAAGCC-ACTATG  964
      ||||| |||||||||||||||||| ||||||
seq2  ATGATGGGGACGTCAATGCAAGCCAACTATG  981

seq1: chr5_115234847_115235251
seq2: B6Ng01-194L19.g_65_469 (reverse)

seq1  CCCCCCCCCCCCCCGTCCCGCTCAACTTCCTTCCTCAGGCCTGTGAGGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCCGTCCCGCTCAACTTCCTTCCTCAGGCCTGTGAGGCG  50

seq1  ATTGTTTGAAGACTATGGTTTGTACCTAAACAACTGGACTGTCAAGGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGAAGACTATGGTTTGTACCTAAACAACTGGACTGTCAAGGCAA  100

seq1  AGCCCCTTTCTTTCCCAAGGACCGGCTGGCGCTCAGAAAGACTCCTGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTTTCTTTCCCAAGGACCGGCTGGCGCTCAGAAAGACTCCTGTTC  150

seq1  ACCGTGTCCTTGGAAGAACTTGCAGTTGTGCAGCACAGGCAGAGCCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGTCCTTGGAAGAACTTGCAGTTGTGCAGCACAGGCAGAGCCAGGA  200

seq1  CACTGATACACCATCAGACTGGGCCACTTGGCTCTGGGGAGCCAAGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATACACCATCAGACTGGGCCACTTGGCTCTGGGGAGCCAAGGGGA  250

seq1  AGAGGGAGGACCGCAGACCCAGTGTATGTTGAGAAACGATGTGTGTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGGACCGCAGACCCAGTGTATGTTGAGAAACGATGTGTGTCCTC  300

seq1  TCCGATTCCTGTACACGCATGTTCACGGGCGTGTCCGACAGGTCTCACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATTCCTGTACACGCATGTTCACGGGCGTGTCCGACAGGTCTCACTC  350

seq1  CCGCTCAGTGAGGCCTGCTGTGTCCTCTGCTGCTGCTCCTGGGCATCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCAGTGAGGCCTGCTGTGTCCTCTGCTGCTGCTCCTGGGCATCTGG  400

seq1  AATTC  405
      |||||
seq2  AATTC  405