BAC Information

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BAC

Clone NameB6Ng01-194N07
Chromosome5 (Build37)
Map Location 79,455,813 - 79,613,955
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194N07.bB6Ng01-194N07.g
ACCGA017416GA017417
length7431,012
definitionB6Ng01-194N07.b B6Ng01-194N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,455,813 - 79,456,491)(79,612,944 - 79,613,955)
sequence
gaattcagtggtagagaaaggaaacaaataaaagggaaaggactgaatga
gtggttgatggagtagaggaaagaataaagacagggatgcataatcattc
taaatagttttcaatgaaatcttgtgaaaacctatagaatttttctgaaa
cattacacatatgtatgatagaaagctattatatatatatatatatatat
atatttatacacacacacacacacacacacacacacacacacacacacac
acacatatatatatatatatatatatatatatatatataatgagagagac
atatatatatatatataatatatatatatatggcacagactgcctggtcc
ctggtcatgcaaaagtctggaacccctgtgacctagtgggtggttatttc
tgcctatatgagacagaaggtctgaaggtctttgatcatgcctccatggc
ccctggctcctgtcccagttacagcctcccacagccccctgcagagaggt
gtgtggccatcagtcacttaggagcagaaccatgccctccacatacaata
aggtttcccaagctctcagaccaaccaatgagaagtacctgttgtcagac
cattaccaaccaaactgtgtatagattcttatctggaagattaaggtgtg
ctagaactactccatcctctgaaccttctgtcctaagagctgtacacttg
ggagtagtctgctctccggaagtgctgctgcactcctccaggc

gaattcatgcagttccagtcacttcattcagcaagtgcagtcagcgcagt
ctagttcatagaattcagggacagtttttccaaaaagagaaattcagtga
gaagccagagatgtgaatatgaatcagtcagtgtggagaggagtttgggc
cagactatctgagttgaatcagtcaggcagaattcaaaaagagtttgaga
ggatgagtttattcttcagtaagcctgttagacaataattacatctagca
aataaaaggtatattttatctctaattcatcatttattttaattgtaatc
attttaatacatttaacatatttcataattttacctgactactttgtctt
taaagattttcattaaaatttaattatactattcccccccccaccttttt
tttttcttggtccaaatctttctgattcatctccctccaactcttgctgt
gtctcctgcctctctctagttgataacctgtttttctttggttattattg
tgacatatatatgtgtatatgtggctcagcttttttgtatatggtttcaa
ttctgataactttatattgggtagtcaattaaaaatgtcaaccctgggaa
aggcaaattcttcctatttccacagctataagtttcctgtaattctttat
ctagtgtggggtcaaaaatttgtttcatcaacattccagaaacgtcatcc
atgacttacagcaaatttatatactctgccttctttcgttcacacaggca
aatattgaagaaaactattcatagacaaaatattataatcattttatgtt
gcattcttatgttattctatattttatttgcttaaatttaaattatgata
gtaaaaaatctagttatttataaatttgtccaagtgaaatgtaagaagtt
tattacaatattagactgagcttttgccaaagagaaacataatctctctc
tctccctctctctctctctgtgtgggtgacagagagagagagagagagag
agagagaccgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_79455813_79456491
seq2: B6Ng01-194N07.b_45_710

seq1  GAATTCAGTGGTAGAGAAAGGAAACAAATAAAAGGGAAAGGACTGAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGTAGAGAAAGGAAACAAATAAAAGGGAAAGGACTGAATGA  50

seq1  GTGGTTGATGGAGTAGAGGAAAGAATAAAGACAGGGATGCATAATCATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGATGGAGTAGAGGAAAGAATAAAGACAGGGATGCATAATCATTC  100

seq1  TAAATAGTTTTCAATGAAATCTTGTGAAAACCTATAGAATTTTTCTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGTTTTCAATGAAATCTTGTGAAAACCTATAGAATTTTTCTGAAA  150

seq1  CATTACACATATGTATGATAGAAAGCTATTATATATATATATATATATAT  200
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  CATTACACATATGTATGATAGAAAGCTAT--TATATATATATATATATAT  198

seq1  ATATATTTATACACACACACACACACACACACACACACACACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTATACACACACACACACACACACACACACACACACACACACAC  248

seq1  ACACACATATATATATATATATATATATATATATATATATAATGAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATATATATATATATATATATATATATATATATATAATGAGAGAG  298

seq1  ACATATATATATATATATAATATATATATATATGGCACAGACTGCCTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATATATATATAATATATATATATATGGCACAGACTGCCTGGT  348

seq1  CCCTGGTCATGCAAAAGTCTGGAACCCCTGTGACCTAGTGGGTGGTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTCATGCAAAAGTCTGGAACCCCTGTGACCTAGTGGGTGGTTATT  398

seq1  TCTGCCTATATGAGACAGAAGGTCTGAAGGTCTTTGATCATGCCTCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTATATGAGACAGAAGGTCTGAAGGTCTTTGATCATGCCTCCATG  448

seq1  GCCCCTGGCTCCTGTCCCAGTTACAGCCTCCCACAGCCCCCTGCAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGGCTCCTGTCCCAGTTACAGCCTCCCACAGCCCCCTGCAGAGAG  498

seq1  GTGTGTGGCCATCAGTCACTTAGGAGCAGAACCATGCCCTCCCACATACA  550
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  GTGTGTGGCCATCAGTCACTTAGGAGCAGAACCATGCCCT-CCACATAC-  546

seq1  AATAAGGTTTCCCCAAAGCTCTCAGACCAAACCAATGAGAAGTACCTGTT  600
      |||||||||||||  ||||||||||||| |||||||||||||||||||||
seq2  AATAAGGTTTCCC--AAGCTCTCAGACC-AACCAATGAGAAGTACCTGTT  593

seq1  GTCAGACCATTACCCAACCCAAAACTGTGTATAAGATTCTTATCTGGAAA  650
      |||||||||||| ||||||  ||||||||||| |||||||||||||| ||
seq2  GTCAGACCATTA-CCAACC--AAACTGTGTAT-AGATTCTTATCTGG-AA  638

seq1  GATTAAAGGTGTGCTAGAACTACTCCATC  679
      |||| ||||||||||||||||||||||||
seq2  GATT-AAGGTGTGCTAGAACTACTCCATC  666


seq1: chr5_79612944_79613955
seq2: B6Ng01-194N07.g_65_1076 (reverse)

seq1  GTCGGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCACCCACACAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCACCCACACAGAGAGA  50

seq1  GAGAGAGGGAGAGAGAGAGATTATGTTTCTCTTTGGCAAAAGCTCAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGGAGAGAGAGAGATTATGTTTCTCTTTGGCAAAAGCTCAGTCT  100

seq1  AATATTGTAATAAACTTCTTACATTTCACTTGGACAAATTTATAAATAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGTAATAAACTTCTTACATTTCACTTGGACAAATTTATAAATAAC  150

seq1  TAGATTTTTTACTATCATAATTTAAATTTAAGCAAATAAAATATAGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTTTACTATCATAATTTAAATTTAAGCAAATAAAATATAGAATA  200

seq1  ACATAAGAATGCAACATAAAATGATTATAATATTTTGTCTATGAATAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGAATGCAACATAAAATGATTATAATATTTTGTCTATGAATAGTT  250

seq1  TTCTTCAATATTTGCCTGTGTGAACGAAAGAAGGCAGAGTATATAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAATATTTGCCTGTGTGAACGAAAGAAGGCAGAGTATATAAATTT  300

seq1  GCTGTAAGTCATGGATGACGTTTCTGGAATGTTGATGAAACAAATTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAGTCATGGATGACGTTTCTGGAATGTTGATGAAACAAATTTTTG  350

seq1  ACCCCACACTAGATAAAGAATTACAGGAAACTTATAGCTGTGGAAATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACACTAGATAAAGAATTACAGGAAACTTATAGCTGTGGAAATAGG  400

seq1  AAGAATTTGCCTTTCCCAGGGTTGACATTTTTAATTGACTACCCAATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTGCCTTTCCCAGGGTTGACATTTTTAATTGACTACCCAATATA  450

seq1  AAGTTATCAGAATTGAAACCATATACAAAAAAGCTGAGCCACATATACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATCAGAATTGAAACCATATACAAAAAAGCTGAGCCACATATACAC  500

seq1  ATATATATGTCACAATAATAACCAAAGAAAAACAGGTTATCAACTAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATGTCACAATAATAACCAAAGAAAAACAGGTTATCAACTAGAGA  550

seq1  GAGGCAGGAGACACAGCAAGAGTTGGAGGGAGATGAATCAGAAAGATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGAGACACAGCAAGAGTTGGAGGGAGATGAATCAGAAAGATTTG  600

seq1  GACCAAGAAAAAAAAAAGGTGGGGGGGGGAATAGTATAATTAAATTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGAAAAAAAAAAGGTGGGGGGGGGAATAGTATAATTAAATTTTAA  650

seq1  TGAAAATCTTTAAAGACAAAGTAGTCAGGTAAAATTATGAAATATGTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCTTTAAAGACAAAGTAGTCAGGTAAAATTATGAAATATGTTAA  700

seq1  ATGTATTAAAATGATTACAATTAAAATAAATGATGAATTAGAGATAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTAAAATGATTACAATTAAAATAAATGATGAATTAGAGATAAAAT  750

seq1  ATACCTTTTATTTGCTAGATGTAATTATTGTCTAACAGGCTTACTGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTTTATTTGCTAGATGTAATTATTGTCTAACAGGCTTACTGAAGA  800

seq1  ATAAACTCATCCTCTCAAACTCTTTTTGAATTCTGCCTGACTGATTCAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTCATCCTCTCAAACTCTTTTTGAATTCTGCCTGACTGATTCAAC  850

seq1  TCAGATAGTCTGGCCCAAACTCCTCTCCACACTGACTGATTCATATTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAGTCTGGCCCAAACTCCTCTCCACACTGACTGATTCATATTCAC  900

seq1  ATCTCTGGCTTCTCACTGAATTTCTCTTTTTGGAAAAACTGTCCCTGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGCTTCTCACTGAATTTCTCTTTTTGGAAAAACTGTCCCTGAAT  950

seq1  TCTATGAACTAGACTGCGCTGACTGCACTTGCTGAATGAAGTGACTGGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAACTAGACTGCGCTGACTGCACTTGCTGAATGAAGTGACTGGAA  1000

seq1  CTGCATGAATTC  1012
      ||||||||||||
seq2  CTGCATGAATTC  1012


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