BAC Information

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BAC

Clone NameB6Ng01-195J05
Chromosome5 (Build37)
Map Location 18,232,097 - 18,382,960
singlet/doubletdoublet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195J05.bB6Ng01-195J05.g
ACCGA017958GA017959
length449952
definitionB6Ng01-195J05.b B6Ng01-195J05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,232,097 - 18,232,551)(18,382,016 - 18,382,960)
sequence
cagacgtttttataattgataacaaacatgataaatttcatacagcttga
agacattattcttattatatcaggcagctagcacatttgccctgtgcccc
tagggaaatagtaaatatttttctgaaacaatttattgtagaaatatctt
tgatcctttagcacctcttattgcaagatggccagacacatctattgaga
gttgtttatcagcattgacttcctttaataagtgtctttcctgaaatcat
tgtttttaacagctgagtagtactccattgtgtaaatatgccacattttc
tgtatccattcttctgttgagggacatattggttatttccagcttctgga
tattataaataaggaagctatacacatagtggagcacgtatctttgttat
atgttagagcatcttttgggtatatattttgggtatatagtagtggtat

gaattccatgtgcttgctggacatgtacagcagtctataggaagaaaggg
aattaaacctggactttggccaccaggctacatgactggcagtggagggg
ttgcaaagcctacatgagctaggacatgaagacccagagcaagaaggaaa
atagtcctactcctacatgcctcaggccaagaattttcaggatttggaca
catctcaaccttagtgctttggactagtgcccctagacatgtggctttct
ggccctacatcatttcacgtgttaatgtactacgttttcttcatccagaa
atcttcattgtgtcaaatatctagcaactattaatatagcagtaatgaac
atggtaaagtaagtgtctttgaggtaggatgaaggatcctttcggtatct
atccaatattggaagagagagagagagagagagagagagagagagagaga
gagagagagcgcaattcccagtttcctgagaaactgccatactgatttcc
atagtggtcaatgtctgtggtgattttagcaatgccatctttccaactga
tctgatgggcagccatggggactaaataaagcttccattgttttgggaac
tgaagcctcattaaccaacaattcacacggaaggtctcatacgtggaata
gttagcaagccactgcttctggtagcagctgactggaagggtattgcttt
aaaacctatatatttcttttataaaaatttagttagggacatgtagtaat
ataggtttagcatcataatcctacttcatttctgcctgtctcagtcttct
aagtgtgccatccagcatgccttgtaacttattttgtatttaacccttta
ccggagagcaattaatatcctcaccaagagaggaacaatttcttcagtat
aataacttgtgccatgggcatccttactcatcaaggcttgaaggatttgg
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18232097_18232551
seq2: B6Ng01-195J05.b_44_498

seq1  GAATTCCAGACGTTTTTATAATTGATAACAAACATGATAAATTTCATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACGTTTTTATAATTGATAACAAACATGATAAATTTCATACA  50

seq1  GCTTGAAGACATTATTCTTATTATATCAGGCAGCTAGCACATTTGCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAGACATTATTCTTATTATATCAGGCAGCTAGCACATTTGCCCTG  100

seq1  TGCCCCTAGGGAAATAGTAAATATTTTTCTGAAACAATTTATTGTAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTAGGGAAATAGTAAATATTTTTCTGAAACAATTTATTGTAGAAA  150

seq1  TATCTTTGATCCTTTAGCACCTCTTATTGCAAGATGGCCAGACACATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTGATCCTTTAGCACCTCTTATTGCAAGATGGCCAGACACATCTA  200

seq1  TTGAGAGTTGTTTATCAGCATTGACTTCCTTTAATAAGTGTCTTTCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGTTGTTTATCAGCATTGACTTCCTTTAATAAGTGTCTTTCCTGA  250

seq1  AATCATTGTTTTTAACAGCTGAGTAGTACTCCATTGTGTAAATATGCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTGTTTTTAACAGCTGAGTAGTACTCCATTGTGTAAATATGCCAC  300

seq1  ATTTTCTGTATCCATTCTTCTGTTGAGGGACATATTGGTTATTTCCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGTATCCATTCTTCTGTTGAGGGACATATTGGTTATTTCCAGCT  350

seq1  TCTGGATATTATAAATAAGGAAGCTATACACATAGTGGAGCACGTATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATATTATAAATAAGGAAGCTATACACATAGTGGAGCACGTATCTT  400

seq1  TGTTATATGTTAGAGCATCTTTTGGGTATATATTTTGGGTATATAGTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATATGTTAGAGCATCTTTTGGGTATATATTTTGGGTATATAGTAGT  450

seq1  GGTAT  455
      |||||
seq2  GGTAT  455


seq1: chr5_18382016_18382960
seq2: B6Ng01-195J05.g_64_1015 (reverse)

seq1  ACCCAAAT-CTTCATGCCTTTGATGAGATAGGATG-CCATGGCACAAG-T  47
      |||||||| ||||| ||| ||||||||  |||||| |||||||||||| |
seq2  ACCCAAATCCTTCAAGCC-TTGATGAGTAAGGATGCCCATGGCACAAGTT  49

seq1  ATTATACTGAAGAAATTGTTCTTCTCTTGGTGA-GATA-TAATTGCTCT-  94
      ||||||||||||||||||||| ||||||||||| |||| |||||||||| 
seq2  ATTATACTGAAGAAATTGTTCCTCTCTTGGTGAGGATATTAATTGCTCTC  99

seq1  CGGTAAAGG--TTAATACAAACTAAGTTACAAGGCATGCTGGATGGCACA  142
      |||||||||  | |||||||| ||||||||||||||||||||||||||||
seq2  CGGTAAAGGGTTAAATACAAAATAAGTTACAAGGCATGCTGGATGGCACA  149

seq1  CTTAGAAGACTGAGACAGGCAGAAATGAAGTAGGATTATGATGCT-AACC  191
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTAGAAGACTGAGACAGGCAGAAATGAAGTAGGATTATGATGCTAAACC  199

seq1  TATATTACTACATGTCCCTAACTAAAATTTTTATAAAAGAAATATATAGG  241
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TATATTACTACATGTCCCTAACT-AAATTTTTATAAAAGAAATATATAGG  248

seq1  TTTTAAAGCAATACCCTTCCAGTCAGCTGCTACCAGAAGCAGTGGCTTGC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGCAATACCCTTCCAGTCAGCTGCTACCAGAAGCAGTGGCTTGC  298

seq1  TAACTATTCCACGTATGAGACCTTCCGTGTGAATTGTTGGTTAATGAGGC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATTCCACGTATGAGACCTTCCGTGTGAATTGTTGGTTAATGAGGC  348

seq1  TTCAGTTCCCAAAACAATGGAAGCTTTATTTAGTCCCCATGGCTGCCCAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCCCAAAACAATGGAAGCTTTATTTAGTCCCCATGGCTGCCCAT  398

seq1  CAGATCAGTTGGAAAGATGGCATTGCTAAAATCACCACAGACATTGACCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAGTTGGAAAGATGGCATTGCTAAAATCACCACAGACATTGACCA  448

seq1  CTATGGAAATCAGTATGGCAGTTTCTCAGGAAACTGGGAATTGCGCTCTC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAAATCAGTATGGCAGTTTCTCAGGAAACTGGGAATTGCGCTCTC  498

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCAATATT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCAATATT  548

seq1  GGATAGATACCGAAAGGATCCTTCATCCTACCTCAAAGACACTTACTTTA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGATACCGAAAGGATCCTTCATCCTACCTCAAAGACACTTACTTTA  598

seq1  CCATGTTCATTACTGCTATATTAATAGTTGCTAGATATTTGACACAATGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCATTACTGCTATATTAATAGTTGCTAGATATTTGACACAATGA  648

seq1  AGATTTCTGGATGAAGAAAACGTAGTACATTAACACGTGAAATGATGTAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTGGATGAAGAAAACGTAGTACATTAACACGTGAAATGATGTAG  698

seq1  GGCCAGAAAGCCACATGTCTAGGGGCACTAGTCCAAAGCACTAAGGTTGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAAAGCCACATGTCTAGGGGCACTAGTCCAAAGCACTAAGGTTGA  748

seq1  GATGTGTCCAAATCCTGAAAATTCTTGGCCTGAGGCATGTAGGAGTAGGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTCCAAATCCTGAAAATTCTTGGCCTGAGGCATGTAGGAGTAGGA  798

seq1  CTATTTTCCTTCTTGCTCTGGGTCTTCATGTCCTAGCTCATGTAGGCTTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCCTTCTTGCTCTGGGTCTTCATGTCCTAGCTCATGTAGGCTTT  848

seq1  GCAACCCCTCCACTGCCAGTCATGTAGCCTGGTGGCCAAAGTCCAGGTTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCCCTCCACTGCCAGTCATGTAGCCTGGTGGCCAAAGTCCAGGTTT  898

seq1  AATTCCCTTTCTTCCTATAGACTGCTGTACATGTCCAGCAAGCACATGGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCTTTCTTCCTATAGACTGCTGTACATGTCCAGCAAGCACATGGA  948

seq1  ATTC  945
      ||||
seq2  ATTC  952


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