BAC Information

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BAC

Clone NameB6Ng01-196E03
Chromosome5 (Build37)
Map Location 126,355,293 - 126,478,035
singlet/doubletdoublet
Overlap geneLOC100039178
Upstream geneZfp664, 3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736
Downstream geneLOC665760, LOC100040327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196E03.bB6Ng01-196E03.g
ACCGA018445GA018446
length962580
definitionB6Ng01-196E03.b B6Ng01-196E03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,477,038 - 126,478,035)(126,355,293 - 126,355,872)
sequence
gaattcttaagagcatgaagtttgtaaatgaaatatccaaacttttacca
ttgccccttaacttacttaacatatgtgtgtaaaaagcaaattattaaga
ctataacaataccaaaatatacctttctcttgcaattctattagaagact
gtagtcaatccatgttcatccaaactccaggctccaatgtcccatgccag
gactgttttcagtgatgctgttcattgttggaagcctgctccttcgtaag
gcagcatccccacagagacccgacaaagcagtcattacttgggaccaaag
aacacttagcagctgcgagtgaaatgccagcctgggtccagaggcctccg
aagtgatttgcagttacagaaaacgccaggataagaatgccggtatgaac
agcttgcagaatgagggttttgcaaaataccattaaattgccacaggcca
actgttctcaaaattatgttcaataattccatgacgcccgcccaaaccag
gaaaaataatcttcttatacaaaatgcatgcaattaataaaagatgaaca
ttttatatccctgcccttctgacacttattacatttacctcctttgagtc
acacagtttaacacaaatgtcaacacggtttggtccatcctgaaccggcc
cttgaggaacaatgctgatcacagttctccaagtctcaactcaccgtgca
tttcattaaagtgggttctgcactgaggtttgaccaccgaattgcatctg
tgacagcagatatctgtgtgcacactgggtacttaaaagttcacaggtat
tactgctaggggaaaaatccatttctacagtgatgggcagcacctcaggt
ggagtgctcagagtcatgtgctcttccctttgctgagtgtactgagaaag
tctcagactgcacatcaagctcgcagaacagctcttgggggagccctgag
gcttgtgagagc

gaattcagatcctcgtgcctgtgtggcaatcaccttaccaactgagccat
ctccccagctctgaaatgtgcatgcttttctgcaaggtagctcatttttt
aaaaaataaatcatgaccatatatttttgtacagtgaaggattacttcag
catgtctgagctgtccaaacaccacatatctcaaagtgaggctcagtctt
caatcagccatgaacctaagtatcttgggccatcaattgggcattcagaa
gagcctgagggactcaatggcatagatgctgatgtggctggtcccaaatt
aggacacccatcaccacagcttgggtgagctgctctgctgagcatcttcc
ccaagtgtagtcattagtgacattgggaagaccaggcccccatctgtgtg
gctttgtaaggagaggtgagcacactgactgtgttgtactcagctttgtc
ctagaagccttttattttgactactttagacaaatattgctgggcggtgg
tggcccatgcctttaatcccagcacttgggaggcagaggcaggtggattt
ctgagttcgaggacagcctggtctacagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_126477038_126478035
seq2: B6Ng01-196E03.b_48_1009 (reverse)

seq1  GCTCTCACAAGGGCCCTTCAGGCGCCTTCCCCCCACAGGAGCTGTTTCTG  50
      |||||||||||    | ||||| ||  |||||   || |||||| |||||
seq2  GCTCTCACAAG----CCTCAGG-GC--TCCCC---CAAGAGCTG-TTCTG  39

seq1  CGAGGCCTGGATGGTTTGCAGTCCCTGAGACTTTTTCTCAGTACACTTCA  100
      ||||  || ||||   ||||||  |||||||  ||||||||||||| |||
seq2  CGAG--CTTGATG---TGCAGT--CTGAGAC--TTTCTCAGTACAC-TCA  79

seq1  GCAAAGGGGAAAGAGCACAATGACCTCTGAGCACTCCACCTGGAGGTGCT  150
      ||||||||  |||||||| |||| ||||||||||||||||| ||||||| 
seq2  GCAAAGGG--AAGAGCAC-ATGA-CTCTGAGCACTCCACCT-GAGGTGC-  123

seq1  TGCCCATCACTGTAGGAAATGGGATTTTTTTCCCCCTAGCAGTAATACCT  200
      |||||||||||||| ||||| ||||||||   ||||||||||||||||||
seq2  TGCCCATCACTGTA-GAAAT-GGATTTTT---CCCCTAGCAGTAATACCT  168

seq1  GTGAACTTTTTAAGTACCCAGTGTGCACACAGCCTTAT-TCTGCTGTCAC  249
      |||||| |||||||||||||||||||||||||    || |||||||||||
seq2  GTGAAC-TTTTAAGTACCCAGTGTGCACACAG----ATATCTGCTGTCAC  213

seq1  AGATGCAATTCGGTGGTCAAACCTCAGTGCAGAACCCACTTTAATGAAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAATTCGGTGGTCAAACCTCAGTGCAGAACCCACTTTAATGAAAT  263

seq1  GCACGGTGAGTTGAGACTTGGAGAACTGTGATCAGCATTGTTCCTCAAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGTGAGTTGAGACTTGGAGAACTGTGATCAGCATTGTTCCTCAAGG  313

seq1  GCCGGTTCAGGATGGACCAAACCGTGTTGACATTTGTGTTAAACTGTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGTTCAGGATGGACCAAACCGTGTTGACATTTGTGTTAAACTGTGTG  363

seq1  ACTCAAAGGAGGTAAATGTAATAAGTGTCAGAAGGGCAGGGATATAAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAGGAGGTAAATGTAATAAGTGTCAGAAGGGCAGGGATATAAAAT  413

seq1  GTTCATCTTTTATTAATTGCATGCATTTTGTATAAGAAGATTATTTTTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCTTTTATTAATTGCATGCATTTTGTATAAGAAGATTATTTTTCC  463

seq1  TGGTTTGGGCGGGCGTCATGGAATTATTGAACATAATTTTGAGAACAGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGGGCGGGCGTCATGGAATTATTGAACATAATTTTGAGAACAGTT  513

seq1  GGCCTGTGGCAATTTAATGGTATTTTGCAAAACCCTCATTCTGCAAGCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTGGCAATTTAATGGTATTTTGCAAAACCCTCATTCTGCAAGCTG  563

seq1  TTCATACCGGCATTCTTATCCTGGCGTTTTCTGTAACTGCAAATCACTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACCGGCATTCTTATCCTGGCGTTTTCTGTAACTGCAAATCACTTC  613

seq1  GGAGGCCTCTGGACCCAGGCTGGCATTTCACTCGCAGCTGCTAAGTGTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCTCTGGACCCAGGCTGGCATTTCACTCGCAGCTGCTAAGTGTTC  663

seq1  TTTGGTCCCAAGTAATGACTGCTTTGTCGGGTCTCTGTGGGGATGCTGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCCCAAGTAATGACTGCTTTGTCGGGTCTCTGTGGGGATGCTGCC  713

seq1  TTACGAAGGAGCAGGCTTCCAACAATGAACAGCATCACTGAAAACAGTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGAAGGAGCAGGCTTCCAACAATGAACAGCATCACTGAAAACAGTCC  763

seq1  TGGCATGGGACATTGGAGCCTGGAGTTTGGATGAACATGGATTGACTACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGGGACATTGGAGCCTGGAGTTTGGATGAACATGGATTGACTACA  813

seq1  GTCTTCTAATAGAATTGCAAGAGAAAGGTATATTTTGGTATTGTTATAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTAATAGAATTGCAAGAGAAAGGTATATTTTGGTATTGTTATAGT  863

seq1  CTTAATAATTTGCTTTTTACACACATATGTTAAGTAAGTTAAGGGGCAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATAATTTGCTTTTTACACACATATGTTAAGTAAGTTAAGGGGCAAT  913

seq1  GGTAAAAGTTTGGATATTTCATTTACAAACTTCATGCTCTTAAGAATTC  998
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAAGTTTGGATATTTCATTTACAAACTTCATGCTCTTAAGAATTC  962


seq1: chr5_126355293_126355872
seq2: B6Ng01-196E03.g_67_646

seq1  GAATTCAGATCCTCGTGCCTGTGTGGCAATCACCTTACCAACTGAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCCTCGTGCCTGTGTGGCAATCACCTTACCAACTGAGCCAT  50

seq1  CTCCCCAGCTCTGAAATGTGCATGCTTTTCTGCAAGGTAGCTCATTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGCTCTGAAATGTGCATGCTTTTCTGCAAGGTAGCTCATTTTTT  100

seq1  AAAAAATAAATCATGACCATATATTTTTGTACAGTGAAGGATTACTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAATCATGACCATATATTTTTGTACAGTGAAGGATTACTTCAG  150

seq1  CATGTCTGAGCTGTCCAAACACCACATATCTCAAAGTGAGGCTCAGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTGAGCTGTCCAAACACCACATATCTCAAAGTGAGGCTCAGTCTT  200

seq1  CAATCAGCCATGAACCTAAGTATCTTGGGCCATCAATTGGGCATTCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGCCATGAACCTAAGTATCTTGGGCCATCAATTGGGCATTCAGAA  250

seq1  GAGCCTGAGGGACTCAATGGCATAGATGCTGATGTGGCTGGTCCCAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGAGGGACTCAATGGCATAGATGCTGATGTGGCTGGTCCCAAATT  300

seq1  AGGACACCCATCACCACAGCTTGGGTGAGCTGCTCTGCTGAGCATCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACCCATCACCACAGCTTGGGTGAGCTGCTCTGCTGAGCATCTTCC  350

seq1  CCAAGTGTAGTCATTAGTGACATTGGGAAGACCAGGCCCCCATCTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGTAGTCATTAGTGACATTGGGAAGACCAGGCCCCCATCTGTGTG  400

seq1  GCTTTGTAAGGAGAGGTGAGCACACTGACTGTGTTGTACTCAGCTTTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTAAGGAGAGGTGAGCACACTGACTGTGTTGTACTCAGCTTTGTC  450

seq1  CTAGAAGCCTTTTATTTTGACTACTTTAGACAAATATTGCTGGGCGGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGCCTTTTATTTTGACTACTTTAGACAAATATTGCTGGGCGGTGG  500

seq1  TGGCCCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTT  550

seq1  CTGAGTTCGAGGACAGCCTGGTCTACAGAG  580
      ||||||||||||||||||||||||||||||
seq2  CTGAGTTCGAGGACAGCCTGGTCTACAGAG  580


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