BAC Information

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BAC

Clone NameB6Ng01-196I18
Chromosome5 (Build37)
Map Location 51,124,517 - 51,125,374
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666223, Gpr125, EG637307, LOC100041015, LOC242987
Downstream geneEG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196I18.bB6Ng01-196I18.g
ACCGA018658GA018659
length1,134891
definitionB6Ng01-196I18.b B6Ng01-196I18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgcccattttttcctggaatgatgaaatcatgtcctcaattc
atgagtctcattttttaaaaaatcatctatcaaattgtatgtgtaaaaca
ctctcccttaaagtgctgtcgaggttaatgagcagatgttcatagagcac
aaagcctcatgccaggcaaacacctgatgctcatcatttgcatcaaatgt
aacatatttatccaacagactgtacacaagacatgcaatagctgcatctt
ccttttattttcttttcatttatcaaggagtgaaagtataaaattatgaa
taacctttactttcagagaaaatggaccacattttaacttggctcaagag
agcctgtaaaagcagagacatttgtggtccagcataaaaactgtgattat
agcatgtatttaaaaggatgggcaagaacctcctggtttccagttgtcac
aattccctgacttactgcaagagaatgtcctgtacacactgatgttgggg
ttgtgatgcaaagccaccactttgtcatagcctcatcacattctgaaaca
agtccccaaaattgtcatgccccctattttttttttaaaagagagaaaag
gaaaaataaaagattgagacagaatataaagaatttaagtgaatagatta
atacataatacagacaacataaaaacccaaaaacaagcaaatgaaaaatt
gaaaagagttaccattttagattccctcgtttttaggtgagagatgggac
aaacccaagtaggtttaatttggatccaaaaaattgggttttgggggaaa
aagggtctggaaatacagatctctctctgggcaagaagaagctggtctaa
ggtctatttggttaagggaatctcatctgaagaacatatgggttctaatt
ttccttaagaattttttaggtgttggaaaaatacttaaaacagtcttctt
gtttatgggccaaagtgaatgaaatttccaactagacacagcttcacctt
aatagcttttctttcctaaataaattcctgattgtttcagtgaattgctt
gagttccaataaatctgtgtatgcagctgaccctatgaatgctttcacgt
atccatgggactgcattgatctcataatgacagt
gaattccaccatgacagttttctcatgtttgagtgaaggaaacgaaggat
cagtgtattttcaagttctgccttcatttccagcatccagctatgatgat
gatgctgtagaatggaaaaggaggagagggaacacttggggaagagaaag
aaacactgtgttgtgagcttctcttccgagaacaatgaataacagttcct
gggaactggttaacttctgagtcattatggggttgatctttgagttgcct
tcaatcaaggcagctagcttcctctcagcatgattatcatgttgattatc
agcagtccatctcatggtgattatctcatttggaatgatgtgactttgtt
tttgttttcaagggctctataaaactagctcatgtggaaaagttatccat
ccgatgtgccactcagacacagagagcacttagaaaattttaggaattag
gaacttaaaacagggttcctctttttattcctgaattaaaaaaacagaaa
aagggaataaaactttaacatggagtcagctcattttatgctgaaaagat
atgtgaaggagttagtcacttaccccccatgctttgcctccctcattttg
accattggggttcaaaaactatttttttattattaaggaaatttctttgg
attaaaacatgcaaaaccttttggaaaaaataaaaaacctccttcctaac
ctctttttttaacccacttttatatgggtatttctcttctttttatattt
caaaatgcctattccggaaaggtccctatatctcttccctgctctctctg
ttctcctaaccccaccacactccccacttttgggacctgggggttcctct
ggatcggggacatataaagtttgccaagataggaggggcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51124517_51125374
seq2: B6Ng01-196I18.g_70_960 (reverse)

seq1  AGGCCC--CCTATCTT-GCAAACTTTATATG-CCCCAGTACAGGGGAA-C  45
      ||||||  |||||||| |||||||||||||| ||||  | ||| |||| |
seq2  AGGCCCCTCCTATCTTGGCAAACTTTATATGTCCCCGATCCAGAGGAACC  50

seq1  ACCAGGGCCAAGAAGT-GGGAGTG-GGT-GGGTTAGG-GAGCAG-GAG-G  89
       ||||| || | |||| ||||||| ||| |||||||| || ||| ||| |
seq2  CCCAGGTCCCAAAAGTGGGGAGTGTGGTGGGGTTAGGAGAACAGAGAGAG  100

seq1  CAGGGA--GGGTATAGGGGACTTTCAGG-ATA-GCA-TTTGAAATAT-AA  133
      ||||||   | |||||||  ||||| || ||| ||| |||||||||| ||
seq2  CAGGGAAGAGATATAGGGACCTTTCCGGAATAGGCATTTTGAAATATAAA  150

seq1  ATGAAG-TAAATACCTA-ATAAAAGTTGGATAAAAAAAGAAGATAAGAAA  181
      | ||||  ||||||| | |||||||| || ||||||||| || | || ||
seq2  AAGAAGAGAAATACCCATATAAAAGTGGGTTAAAAAAAG-AGGTTAGGAA  199

seq1  GAAGATATTTTATTTTTACCAAAGGGTTTTGCATGCTCTAATCCAAAGAA  231
      | || | |||||||||| ||||| ||||||||||| | ||||||||||||
seq2  GGAGGTTTTTTATTTTTTCCAAAAGGTTTTGCATGTTTTAATCCAAAGAA  249

seq1  ATATCC-TAATAATTAAAAAATAGTTTTTGAACCACAATGGTCAAAATGA  280
      || ||| ||||||| ||||||||||||||||||| |||||||||||||||
seq2  ATTTCCTTAATAATAAAAAAATAGTTTTTGAACCCCAATGGTCAAAATGA  299

seq1  GGATGGC-AAGCAT-GGTGGTAAGTGACTAACTCC-TCACATATC-TCTC  326
      ||  ||| |||||| || ||||||||||||||||| ||||||||| | ||
seq2  GGGAGGCAAAGCATGGGGGGTAAGTGACTAACTCCTTCACATATCTTTTC  349

seq1  AGCATAAAATGAGCTGACT-CATGTTATAGTTTTATACCTTTTTTCTGTC  375
      ||||||||||||||||||| ||||||| |||||||| || ||||||||| 
seq2  AGCATAAAATGAGCTGACTCCATGTTAAAGTTTTATTCCCTTTTTCTGTT  399

seq1  TTATT-ATTCAGGAAT-AAAAGAG--AACCTGTTCTAAGTTCCT-ATTCC  420
      || || |||||||||| |||||||  | |||||| ||||||||| |||||
seq2  TTTTTAATTCAGGAATAAAAAGAGGAACCCTGTTTTAAGTTCCTAATTCC  449

seq1  TAAAATTTTCTAAGTGCTCTCTGTGTCTGAGTGGCACATCGGATGGATAA  470
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTCTAAGTGCTCTCTGTGTCTGAGTGGCACATCGGATGGATAA  499

seq1  C-TTTCCACATGAGCTAGTTTAATAGAG-CCTTGAAA--CAAAACAAAGT  516
      | ||||||||||||||||||| |||||| ||||||||   ||||||||||
seq2  CTTTTCCACATGAGCTAGTTTTATAGAGCCCTTGAAAACAAAAACAAAGT  549

seq1  CACATCATTCCAAATGAGATAATCACCATGAGATGGACTGCTGATAATCA  566
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCATTCCAAATGAGATAATCACCATGAGATGGACTGCTGATAATCA  599

seq1  ACATGATAATCATGCTGAGAGGAAGCTAGCTGCCTTGATTGAAGGCAACT  616
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATAATCATGCTGAGAGGAAGCTAGCTGCCTTGATTGAAGGCAACT  649

seq1  CAAAGATCAACCCCATAATGACTCAGAAGTTAACCAGTTCCCAGGAACTG  666
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATCAACCCCATAATGACTCAGAAGTTAACCAGTTCCCAGGAACTG  699

seq1  TTATTCATTGTTCTCGGAAGAGAAGCTCACAACACAGTGTTTCTTTCTCT  716
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATTGTTCTCGGAAGAGAAGCTCACAACACAGTGTTTCTTTCTCT  749

seq1  TCCCCAAGTGTTCCCTCTCCTCCTTTTCCATTCTACAGCATCATCATCAT  766
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGTGTTCCCTCTCCTCCTTTTCCATTCTACAGCATCATCATCAT  799

seq1  AGCTGGATGCTGGAAATGAAGGCAGAACTTGAAAATACACTGATCCTTCG  816
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGATGCTGGAAATGAAGGCAGAACTTGAAAATACACTGATCCTTCG  849

seq1  TTTCCTTCACTCAAACATGAGAAAACTGTCATGGTGGAATTC  858
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCACTCAAACATGAGAAAACTGTCATGGTGGAATTC  891