BAC Information

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BAC

Clone NameB6Ng01-197C18
Chromosome5 (Build37)
Map Location 110,289,710 - 110,290,881
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik
Downstream geneLOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197C18.bB6Ng01-197C18.g
ACCGA019109GA019110
length1,1491,195
definitionB6Ng01-197C18.b B6Ng01-197C18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttcatgtttttgaaatttatcatgagaggcaaaggctttacca
cactgatcacatttgtaaggtttctctccagtatgaattctttcatgttt
ttgaagttgaccatgagaggcaaaggatttagtacactgcttacattcat
aaggtttcactccagtatgtgttgttttatgtgtacggagactggcatta
catacaaaggctttaccacattcattgcatttgtaaggtttctctccagt
atgaactctttcatgtctcttaagatcattctgacctacaaaggctttac
cacattgatcacatttgtaaggtttctctccagtgtgtattcttttatgt
actcggagatgacaatgatgtgcaaaggctttactacactgattacattc
atagggtttctctccagtatgtgttcttttatgtacttggagggtactat
ggaatgcaaaggctttaccacattgatcacatttgtaaggtttctctcca
gtatgtgtaaccatatgtattttgagatgactgtgttgtgtaaaggcttt
accacattgattacattcatagggtttctctccactatgtgttcttttat
gtatttgtagaatgctgtgtcgtgaataggctttatcacattgattgcat
ttgtagcgtttctctccagtatgtattattttacgcatttgtagactact
gtgatgaacaaaggcttcaccatatttgaataccttcgtagggtttctct
ccagtatgatttctttcatgcctgcaaagataattggcacatgtgaaagc
tttgccacattcactaaactcatgaatatttttatctgtaggaattaatt
ttataatttggcctaattgtaaagaggagtcacatcttaagatttttatc
actttgtttatattctttgtttccccttcattatggtttcccttgcatac
ctgtaatgtaaatactacatggctcacattgtagcatcattctctttttt
tttttgttttttttttgaagaacagggttctcttgtatagacctggctag
tccttcaactcaaaatcactgccctggccttcagattgggataaaggaat
gaccaccactacattggcctttttatatggtacggatcagagttcctca
gaattctcgcctctcctccctaagaaggtaggtgaaacttatttgagatg
gcaaaaggttcaatggctgtttgaagaacatggtatgttacctagatgct
ttaattagcacctaaaatacagatcacagtattcccttttctgtgggagg
acagtcatgtaaaatacatgtttgcacatcgtgtcctccagctagaggac
tgatcacattagtaataggctactgagaacgtgcttcaaagactcactca
ctcggaaaaaaattttttttttcggaaaaactttttattttaaaactaaa
gaccatgaaactttttttaaattcgatttttattttaaaatttttatttt
tggactggagagatggctcagtggttaagagcacccactgctcttctgaa
ggtcctgagttcaaatcccagcaaacacatggtagctcacaaccatctgt
aatgagatctgtcgccctcttctggtgcatctgaactgtatctacagtgt
acttagatataataataaataaatcttttttaaaattttatttttaaaac
atatgtatatataacaattacattatttataaagtaaccacaaaattttt
gtaataaaataagcctcacgaatgaaaatttctttaaaggaaatttacaa
aaaaaaaaaatcagtttaaaaaaaaaaaaggaaatttactgtatacagta
tagcaactttctcagagttagtctttcatcattatctcattaaaaaaaat
tggttcagtagaagccaccagggggtaccctcagctctgtcttctacttc
tgttcctacttaaggtgtcctggacacaaggtgacactacaaaatagact
tctgtaggattgatgaacccctattagacaagttcaacagggaaattaat
atcaacttcaatgaaggaggaaatgaaaacagttggggtattgagccttt
cagtactgtggaaggaaatagaaagaagatccttggtatgctggggcctt
actaacatagagttggatgctttccagtcagcttttggatggaatcacag
ggccccattggaaggacctagagaaatccccaagggagctaaagggatct
gcacccttataggttgcacaagaaatatgaacttatcaataccctcggaa
cgcttcttgattctcttaagctgcaatatgtatcaaaaaatggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_110289710_110290881
seq2: B6Ng01-197C18.g_65_1259

seq1  GAATTCTCGCCTCTCCTCCCTAAGAAGGTAGGTGAAACTTATTTGAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGCCTCTCCTCCCTAAGAAGGTAGGTGAAACTTATTTGAGATG  50

seq1  GCAAAAGGTTCAATGGCTGTTTGAAGAACATGGTATGTTACCTAGATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGGTTCAATGGCTGTTTGAAGAACATGGTATGTTACCTAGATGCT  100

seq1  TTAATTAGCACCTAAAATACAGATCACAGTATTCCCTTTTCTGTGGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAGCACCTAAAATACAGATCACAGTATTCCCTTTTCTGTGGGAGG  150

seq1  ACAGTCATGTAAAATACATGTTTGCACATCGTGTCCTCCAGCTAGAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCATGTAAAATACATGTTTGCACATCGTGTCCTCCAGCTAGAGGAC  200

seq1  TGATCACATTAGTAATAGGCTACTGAGAACGTGCTTCAAAGACTCACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACATTAGTAATAGGCTACTGAGAACGTGCTTCAAAGACTCACTCA  250

seq1  CTCGGAAAAAAATTTTTTTTTTCGGAAAAACTTTTTATTTTAAAACTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGAAAAAAATTTTTTTTTTCGGAAAAACTTTTTATTTTAAAACTAAA  300

seq1  GACCATGAAACTTTTTTTAAATTCGATTTTTATTTTAAAATTTTTATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGAAACTTTTTTTAAATTCGATTTTTATTTTAAAATTTTTATTTT  350

seq1  TGGACTGGAGAGATGGCTCAGTGGTTAAGAGCACCCACTGCTCTTCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGGAGAGATGGCTCAGTGGTTAAGAGCACCCACTGCTCTTCTGAA  400

seq1  GGTCCTGAGTTCAAATCCCAGCAAACACATGGTAGCTCACAACCATCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGAGTTCAAATCCCAGCAAACACATGGTAGCTCACAACCATCTGT  450

seq1  AATGAGATCTGTCGCCCTCTTCTGGTGCATCTGAACTGTATCTACAGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATCTGTCGCCCTCTTCTGGTGCATCTGAACTGTATCTACAGTGT  500

seq1  ACTTAGATATAATAATAAATAAATCTTTTTTAAAATTTTATTTTTAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGATATAATAATAAATAAATCTTTTTTAAAATTTTATTTTTAAAAC  550

seq1  ATATGTATATATAACAATTACATTATTTATAAAGTAACCACAAAATTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATATATAACAATTACATTATTTATAAAGTAACCACAAAATTTTT  600

seq1  GTAATAAAATAAGCCTCACGAATGAAAATTTCTTTAAAGGAAATTTACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAAATAAGCCTCACGAATGAAAATTTCTTTAAAGGAAATTTACAA  650

seq1  AAAAAAAAAATCAGTTT-AAAAAAAAAAAGGAAATTTACTGTATACAGTA  699
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATCAGTTTAAAAAAAAAAAAGGAAATTTACTGTATACAGTA  700

seq1  TAGCAACTTTCTCAGAGTTAGTCTTTCATCATTATCTCATTAAAAAAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACTTTCTCAGAGTTAGTCTTTCATCATTATCTCATTAAAAAAAAT  750

seq1  TGGTTCAGTAGAAGCCACCAGGGGGTACCCTCAGCTCTGTCTTCTACTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAGTAGAAGCCACCAGGGGGTACCCTCAGCTCTGTCTTCTACTTC  800

seq1  TG-TCCTACTTAAGGTGTCCTGGACACAAGGTGACACTACAAAATAGACT  848
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTACTTAAGGTGTCCTGGACACAAGGTGACACTACAAAATAGACT  850

seq1  TCTGTAGGAATGATGAA-CCCTATTAGACAAGTTCAACAGG--AAATAAT  895
      ||||||||| ||||||| |||||||||||||||||||||||  || ||||
seq2  TCTGTAGGATTGATGAACCCCTATTAGACAAGTTCAACAGGGAAATTAAT  900

seq1  ATCAACTTCAATGAA-GAGGAAATG-AAACAGT---GGGAATGAGCCTTT  940
      ||||||||||||||| ||||||||| |||||||   || | |||||||||
seq2  ATCAACTTCAATGAAGGAGGAAATGAAAACAGTTGGGGTATTGAGCCTTT  950

seq1  CAGTACTGTGGAAGGAAATAGAAAG-AGATCC-TGGTATGCTGGGGCCTA  988
      ||||||||||||||||||||||||| |||||| |||||||||||||||| 
seq2  CAGTACTGTGGAAGGAAATAGAAAGAAGATCCTTGGTATGCTGGGGCCTT  1000

seq1  GCAAACACAGAAGTGGATGC-TCACAGTCAGCTATTGGATGG-ATCACAG  1036
       | |||| |||  ||||||| |  ||||||||| |||||||| |||||||
seq2  ACTAACATAGAGTTGGATGCTTTCCAGTCAGCTTTTGGATGGAATCACAG  1050

seq1  GGCCCCCAATGG-AGGAGCTAGAGAAATCACCCAAGGAGCTAAAGGGATC  1085
      || ||||| ||| |||| ||||||||||| || | |||||||||||||||
seq2  GG-CCCCATTGGAAGGACCTAGAGAAATCCCCAAGGGAGCTAAAGGGATC  1099

seq1  TGCAACCCTATAGGTTGCAACAAG-AATATGAACTAACCAGTACCC-CGG  1133
      |||| || |||||||||| ||||| |||||||||| | || ||||| |||
seq2  TGCACCCTTATAGGTTGC-ACAAGAAATATGAACTTATCAATACCCTCGG  1148

seq1  AGC---TCTTG--TCTCT--AGCTGC-ATATGTATCAAAAGATGGCC  1172
      | |   |||||  |||||  |||||| ||||||||||||| ||||||
seq2  AACGCTTCTTGATTCTCTTAAGCTGCAATATGTATCAAAAAATGGCC  1195