BAC Information

Click to search

BAC

Clone NameB6Ng01-197G05
Chromosome5 (Build37)
Map Location 107,228,817 - 107,409,032
singlet/doubletdoublet
Overlap geneEG666922, Hfm1, Cdc7
Upstream geneLrrc8d, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400
Downstream geneTgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197G05.bB6Ng01-197G05.g
ACCGA019265GA019266
length1,192517
definitionB6Ng01-197G05.b B6Ng01-197G05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,407,826 - 107,409,032)(107,228,817 - 107,229,339)
sequence
gaattccaggtgggccagaggtacacagtgaaaacctgtctcaaaaaaac
taaagaaattccatatatgtgtgcacacctgagaatatgccataaaagat
gtatttcttctttgctaccctaacgacacagataccaaaggctaataata
tacatttctgttatcttccttcgtagtaatccttactttagtgcccagta
caatgtttaatatacaacagatttaaacttcctattgagaatgtatagaa
tggaagacataattacaaagctgacctctagttagctgacaaaggaagga
gtgtaaagtccagccttaaacactagtgtgggcacacagcactctgtagt
acacacgactgcccactccttacacaccagtcactagcgcattatgtgtg
ctgggcacatggcactctgttgtaaacaactgtccactctttttaaacaa
agttactgttttcaagcaagtgaatacgtttacttgtgaggggaattttg
caacatttatttagcaatttataggcgacaatcaaaagcatctgccttgt
tctagaatttaaaacttaccaaaagctttagcagcctggatagtttccct
ggatcctcgaattgtcatgatctgagccaaagcagttaagtcatcactgg
ccttgtaaaatgggtaccgcccactgagcaaggacaggaatatgacacct
gcagaccacatgtcaatcgctgtgacagaaaacagactttaaaaaccagc
ctgaaattctcaacgtacgatcacctaaaccagtagctgcacaacttaac
tgagaacaaacatcatcttagaaaccttaagttatgtatgacacacaggc
tcagttcaacaggattctcttcaatcgttctgggacagacatttaagttt
cttgggagattctaaagtataaccacaactctaactcaacattccttctg
caaaacggttctcttgacacgctgatgattagaaatatttcatcattaga
aattgtaaataaatgtacatttacatttgatctatagatcaaaggaaatt
caacaatagctattgggaagaaatctggatgcttcagttggcgacttggt
agtacaaggcatttctttagtggagacactggacattacacagtgcagct
atcacaccctgcgttggaacacgaccagaatcagaacaaaac
tttttgtttgtttgttttgtttttctagacaggtttctctgtgtagcctt
ggctgtcctggaactcactttgtagaccaggctggcctcgaactcagaaa
tccacctgcttctgcctcccaagtgctgagattaaaggcgtgcgacacca
ctgtccggcttggaattctttctcagtatcaagatgttactaatgggacc
tggttggcctgacttttgggttttgttattgttggttttttgagatagaa
tttctcagtgtaatcagccctggctgtcagtttgtactccaggctggcct
tgaactcgcagagatccgcctgcctctgcctgctgagtgctgggattaaa
ggtgtggccaccacatccggctttggttgacctgacttttgaggtgattt
gtgagaaaagtgatttttaaaaaggatggaagaaaaaaaaaaccatccac
gaaagcaaaacacgaggatagccagaaagtggatgtgtgtgtatgtgtgt
gtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_107407826_107409032
seq2: B6Ng01-197G05.b_50_1241 (reverse)

seq1  GTTTTGTTTCTG-TTCTGGTGCTGGTCTCAAACGCAGGGT-TG-TAGCTG  47
      |||||| ||||| |||||||  ||   || |||||||||| || ||||||
seq2  GTTTTG-TTCTGATTCTGGTCGTG--TTCCAACGCAGGGTGTGATAGCTG  47

seq1  CACTGGTGTAAATGCTCAGTGTGTCTCACTAAAAGGAAAATGCTTGTACT  97
      |||| |||| ||||  |||||| || |||||||  ||||   ||||||||
seq2  CACT-GTGT-AATGTCCAGTGTCTC-CACTAAA--GAAATGCCTTGTACT  92

seq1  ACCAAGTCGCAACTTGAAAAGCATCCAGATTTCTTCCCAAATAGCTATTG  147
      |||||||||| |  ||  |||||||||||||||||||| |||||||||||
seq2  ACCAAGTCGCCAACTG--AAGCATCCAGATTTCTTCCC-AATAGCTATTG  139

seq1  TTGAATTTCCTTTGATCTTATAGGATCAAATGTAAATGTACATTTATTTA  197
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  TTGAATTTCCTTTGATC-TATA-GATCAAATGTAAATGTACATTTATTTA  187

seq1  CAATTTTCTAATGATGAAATATTTCTAATTCATCAGCGTGTTCAAGAGAA  247
      ||| |||||||||||||||||||||||| ||||||||||| ||||||| |
seq2  CAA-TTTCTAATGATGAAATATTTCTAA-TCATCAGCGTG-TCAAGAG-A  233

seq1  ACCGTTTTGCAGAAGGAATGTTGAGTTAGAGTTGTGGTTATACTTTAGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTTTTGCAGAAGGAATGTTGAGTTAGAGTTGTGGTTATACTTTAGAA  283

seq1  TCTCCCAAGAAACTTAAATGTCTGTCCCAGAACGATTTGAAGAGAATCCT  347
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTCCCAAGAAACTTAAATGTCTGTCCCAGAACGA-TTGAAGAGAATCCT  332

seq1  GTTGAACTGAGCCTGTGTGTCATACATAACTTAAGGTTTCTAAGATGATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACTGAGCCTGTGTGTCATACATAACTTAAGGTTTCTAAGATGATG  382

seq1  TTTGTTCTCAGTTAAGTTGTGCAGCTACTGGTTTAGGTGATCGTACGTTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTCAGTTAAGTTGTGCAGCTACTGGTTTAGGTGATCGTACGTTG  432

seq1  AGAATTTCAGGCTGGTTTTTAAAGTCTGTTTTCTGTCACAGCGATTGACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTCAGGCTGGTTTTTAAAGTCTGTTTTCTGTCACAGCGATTGACA  482

seq1  TGTGGTCTGCAGGTGTCATATTCCTGTCCTTGCTCAGTGGGCGGTACCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCTGCAGGTGTCATATTCCTGTCCTTGCTCAGTGGGCGGTACCCA  532

seq1  TTTTACAAGGCCAGTGATGACTTAACTGCTTTGGCTCAGATCATGACAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAGGCCAGTGATGACTTAACTGCTTTGGCTCAGATCATGACAAT  582

seq1  TCGAGGATCCAGGGAAACTATCCAGGCTGCTAAAGCTTTTGGTAAGTTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGATCCAGGGAAACTATCCAGGCTGCTAAAGCTTTTGGTAAGTTTT  632

seq1  AAATTCTAGAACAAGGCAGATGCTTTTGATTGTCGCCTATAAATTGCTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTAGAACAAGGCAGATGCTTTTGATTGTCGCCTATAAATTGCTAA  682

seq1  ATAAATGTTGCAAAATTCCCCTCACAAGTAAACGTATTCACTTGCTTGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTTGCAAAATTCCCCTCACAAGTAAACGTATTCACTTGCTTGAA  732

seq1  AACAGTAACTTTGTTTAAAAAGAGTGGACAGTTGTTTACAACAGAGTGCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAACTTTGTTTAAAAAGAGTGGACAGTTGTTTACAACAGAGTGCC  782

seq1  ATGTGCCCAGCACACATAATGCGCTAGTGACTGGTGTGTAAGGAGTGGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCCAGCACACATAATGCGCTAGTGACTGGTGTGTAAGGAGTGGGC  832

seq1  AGTCGTGTGTACTACAGAGTGCTGTGTGCCCACACTAGTGTTTAAGGCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGTGTGTACTACAGAGTGCTGTGTGCCCACACTAGTGTTTAAGGCTG  882

seq1  GACTTTACACTCCTTCCTTTGTCAGCTAACTAGAGGTCAGCTTTGTAATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTACACTCCTTCCTTTGTCAGCTAACTAGAGGTCAGCTTTGTAATT  932

seq1  ATGTCTTCCATTCTATACATTCTCAATAGGAAGTTTAAATCTGTTGTATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCCATTCTATACATTCTCAATAGGAAGTTTAAATCTGTTGTATA  982

seq1  TTAAACATTGTACTGGGCACTAAAGTAAGGATTACTACGAAGGAAGATAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATTGTACTGGGCACTAAAGTAAGGATTACTACGAAGGAAGATAA  1032

seq1  CAGAAATGTATATTATTAGCCTTTGGTATCTGTGTCGTTAGGGTAGCAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGTATATTATTAGCCTTTGGTATCTGTGTCGTTAGGGTAGCAAA  1082

seq1  GAAGAAATACATCTTTTATGGCATATTCTCAGGTGTGCACACATATATGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATACATCTTTTATGGCATATTCTCAGGTGTGCACACATATATGG  1132

seq1  AATTTCTTTAGTTTTTTTGAGACAGGTTTTCACTGTGTACCTCTGGCCCA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTTAGTTTTTTTGAGACAGGTTTTCACTGTGTACCTCTGGCCCA  1182

seq1  CCTGGAATTC  1207
      ||||||||||
seq2  CCTGGAATTC  1192

seq1: chr5_107228817_107229339
seq2: B6Ng01-197G05.g_67_589

seq1  GAATTCTTTTTGTTTGTTTGTTTTGTTTTTCTAGACAGGTTTCTCTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGTTTGTTTGTTTTGTTTTTCTAGACAGGTTTCTCTGTGT  50

seq1  AGCCTTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACT  100

seq1  CAGAAATCCACCTGCTTCTGCCTCCCAAGTGCTGAGATTAAAGGCGTGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCCACCTGCTTCTGCCTCCCAAGTGCTGAGATTAAAGGCGTGCG  150

seq1  ACACCACTGTCCGGCTTGGAATTCTTTCTCAGTATCAAGATGTTACTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACTGTCCGGCTTGGAATTCTTTCTCAGTATCAAGATGTTACTAAT  200

seq1  GGGACCTGGTTGGCCTGACTTTTGGGTTTTGTTATTGTTGGTTTTTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTGGTTGGCCTGACTTTTGGGTTTTGTTATTGTTGGTTTTTTGAG  250

seq1  ATAGAATTTCTCAGTGTAATCAGCCCTGGCTGTCAGTTTGTACTCCAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTTCTCAGTGTAATCAGCCCTGGCTGTCAGTTTGTACTCCAGGC  300

seq1  TGGCCTTGAACTCGCAGAGATCCGCCTGCCTCTGCCTGCTGAGTGCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGAACTCGCAGAGATCCGCCTGCCTCTGCCTGCTGAGTGCTGGG  350

seq1  ATTAAAGGTGTGGCCACCACATCCGGCTTTGGTTGACCTGACTTTTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGTGTGGCCACCACATCCGGCTTTGGTTGACCTGACTTTTGAGG  400

seq1  TGATTTGTGAGAAAAGTGATTTTTAAAAAGGATGGAAGAAAAAAAAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGTGAGAAAAGTGATTTTTAAAAAGGATGGAAGAAAAAAAAAACC  450

seq1  ATCCACGAAAGCAAAACACGAGGATAGCCAGAAAGTGGATGTGTGTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACGAAAGCAAAACACGAGGATAGCCAGAAAGTGGATGTGTGTGTAT  500

seq1  GTGTGTGTGTGTGTGTGTGTGTG  523
      |||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTG  523