BAC Information

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BAC

Clone NameB6Ng01-197H22
Chromosome5 (Build37)
Map Location 14,031,075 - 14,214,208
singlet/doubletdoublet
Overlap geneSema3e, LOC100042957
Upstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197H22.bB6Ng01-197H22.g
ACCGA019341GA019342
length1,0761,186
definitionB6Ng01-197H22.b B6Ng01-197H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,031,075 - 14,032,146)(14,213,030 - 14,214,208)
sequence
gaattcaatgatggttttattaaccaatagtttaagaaagaaacatggaa
caaaatgtgaagaattataatatgttttgtggagttggacttaacaaaaa
atatttttctaaggggaaatctatgtaagggtgttttctttcctgaccaa
tgatttcaagacatctttcgggactgtgaacttgccttcttcctgtgatg
agcctttggtggtcaagacaattattattcaagaacagttgtgtgtgaag
ttctcttgtgtagattaagatcttcccacctatttcctgggtgctctagc
ctgtagtcttacagattaaatcccaatagcccctaaaaaaataccagaga
atccactgatttacttgaagttttttttaaactgaaaaatgaaatttcac
atctataggcggtaccttacttacattctcagccgtgtctgctctctgcc
taaaggtttaggagcgcaggaatggtaaacagaacaagtactttaggctc
agacattacaaaacactcttgaattcttattttgattgccttgatccccc
taggttttgatgaagcatccctaatttaaatcttgcttctggttctgtgg
cttaagcaagtaacttatgttttgtgaccaagagccctctctgctttaaa
gcagtgcaacgtttaatttgcagattgggagggatcagggaagatgatac
aaatggatgtggtacaatacttccaggcctttcacaaataactcaatgaa
ccagaagacacttgagcatcatgcatgctggtttcctttttagatgtaaa
aggaaccatgagcaaaactctcagcttccaatttaaaatacttttaaatt
gaaggtacttactcatcacaggttttccctaaaagcaagagttttcctta
aaggccatttgtgaccactgtaggtgactacaaattgcaaggcatttgtt
ggagtcccttgcattttatatgtaactgtagaattacttttgttaataat
taaggaagttgcaactttgccagctggcaccttgggagaacaacagaatc
aatcctgaaatacctacctaacaaag
gaattcacagtgattatgagagtatgcacagggcctgtgtgaactcaacg
agacaaaattccaacatggagagggcaggtggacaaggagtcccatgtct
agaggaggaggtatgagcaattgattccttgccagttgaaaaccatagct
ccaagagtatattggcaacacaaactggatttgatggggatgagaaagaa
ggacacagacttgggtggttagggataggaatgtgatctggaaagagttg
ggagaggagacagcatgaacaaaacacattgtgtgaaaatttttttcaaa
gattagaaatgatactgttcatcttgtgactattgctctctatcagtatt
ttctcattatgttagtcttcatgaggcattcattatccattgtgtgtcac
tcagggaacaaagacacaaggaatgattagaagatggcaggtcctctttg
tgctgggctcctgatttaatccaccagaacagaacaggtgtggtataaaa
tacattccccgttaatacattcttctttgtccgtgtaggcaacaccaaac
ttgccaaatcccaagtcagggagctcaatttttccagctcaatttctcct
gctttttcaactaagtgaattctttttacttcctatcgtgtaaagagctg
tggctcacataggttatcaggtttccagtccagtggctacagctctttcc
acacggagtaaatgatctcccaagtacttttgggatgagggagattggac
aaacgtgaagaattttatttttatttcttctcattggagggattgttcta
caacttgtgtttagcttggagagctattttttatttgatttctcgtctga
ataaataaaacagccctcagatggcaagcacttcacatttttagcacaga
gtaattcgattttagtagtttcaaaagaaattcacttggcaatgttcctt
cagtaataaatactcctctttaaatacttgagcttaagtttccgagtcca
tgaataacaagctctgggaaaaacttgttcccttgaagtgcattagatgg
tatatggaaatgacccacattcaccacttcaacaaaatgctttgatgaat
gggtctttcactttcaaaccctttgaggattcctggtaggaccgtacggt
gtttaataatcaactcaatctttttaataggagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14031075_14032146
seq2: B6Ng01-197H22.b_42_1117

seq1  GAATTCAATGATGGTTTTATTAACCAATAGTTTAAGAAAGAAACATGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGATGGTTTTATTAACCAATAGTTTAAGAAAGAAACATGGAA  50

seq1  CAAAATGTGAAGAATTATAATATGTTTTGTGGAGTTGGACTTAACAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTGAAGAATTATAATATGTTTTGTGGAGTTGGACTTAACAAAAA  100

seq1  ATATTTTTCTAAGGGGAAATCTATGTAAGGGTGTTTTCTTTCCTGACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTCTAAGGGGAAATCTATGTAAGGGTGTTTTCTTTCCTGACCAA  150

seq1  TGATTTCAAGACATCTTTCGGGACTGTGAACTTGCCTTCTTCCTGTGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCAAGACATCTTTCGGGACTGTGAACTTGCCTTCTTCCTGTGATG  200

seq1  AGCCTTTGGTGGTCAAGACAATTATTATTCAAGAACAGTTGTGTGTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTGGTGGTCAAGACAATTATTATTCAAGAACAGTTGTGTGTGAAG  250

seq1  TTCTCTTGTGTAGATTAAGATCTTCCCACCTATTTCCTGGGTGCTCTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGTGTAGATTAAGATCTTCCCACCTATTTCCTGGGTGCTCTAGC  300

seq1  CTGTAGTCTTACAGATTAAATCCCAATAGCCCCTAAAAAAATACCAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTCTTACAGATTAAATCCCAATAGCCCCTAAAAAAATACCAGAGA  350

seq1  ATCCACTGATTTACTTGAAGTTTTTTTTAAACTGAAAAATGAAATTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTGATTTACTTGAAGTTTTTTTTAAACTGAAAAATGAAATTTCAC  400

seq1  ATCTATAGGCGGTACCTTACTTACATTCTCAGCCGTGTCTGCTCTCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAGGCGGTACCTTACTTACATTCTCAGCCGTGTCTGCTCTCTGCC  450

seq1  TAAAGGTTTAGGAGCGCAGGAATGGTAAACAGAACAAGTACTTTAGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTTTAGGAGCGCAGGAATGGTAAACAGAACAAGTACTTTAGGCTC  500

seq1  AGACATTACAAAACACTCTTGAATTCTTATTTTGATTGCCTTGATCCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTACAAAACACTCTTGAATTCTTATTTTGATTGCCTTGATCCCCC  550

seq1  TAGGTTTTGATGAAGCATCCCTAATTTAAATCTTGCTTCTGGTTCTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTGATGAAGCATCCCTAATTTAAATCTTGCTTCTGGTTCTGTGG  600

seq1  CTTAAGCAAGTAACTTATGTTTTGTGACCAAGAGCCCTCTCTGCTTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCAAGTAACTTATGTTTTGTGACCAAGAGCCCTCTCTGCTTTAAA  650

seq1  GCAGTGCAACGTTTAATTTGCAGATTGGGAGGGATCAGGGAAGATGATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCAACGTTTAATTTGCAGATTGGGAGGGATCAGGGAAGATGATAC  700

seq1  AAATGGATGTGGTACAATACTTCCAGGCCTTTCACAAATAACTCAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATGTGGTACAATACTTCCAGGCCTTTCACAAATAACTCAATGAA  750

seq1  CCAGAAGACACTTGAGCATCATGCATGCTGGTTTCCTTTTTAGATGTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGACACTTGAGCATCATGCATGCTGGTTTCCTTTTTAGATGTAAA  800

seq1  AGGAACCATGAGCAAAACTCTCAGCTTCCAATTTAAAATACTTTTAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCATGAGCAAAACTCTCAGCTTCCAATTTAAAATACTTTTAAATT  850

seq1  GAAGGTACTTACTCATCACAGGTTTTCCCTAAAAGCAAGAGTTTTCCTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTACTTACTCATCACAGGTTTTCCCTAAAAGCAAGAGTTTTCCTTA  900

seq1  AAGGCCA-TTGTGACCACTGTAGGTGACTACAAATTGC-AGGCA-TTGTT  947
      ||||||| |||||||||||||||||||||||||||||| ||||| |||||
seq2  AAGGCCATTTGTGACCACTGTAGGTGACTACAAATTGCAAGGCATTTGTT  950

seq1  GGAGTCCCTTGCA-TTTATATGTTACTGTAGAATTAC-TTTGTTAATAAT  995
      ||||||||||||| ||||||||| ||||||||||||| ||||||||||||
seq2  GGAGTCCCTTGCATTTTATATGTAACTGTAGAATTACTTTTGTTAATAAT  1000

seq1  TTAAAGGAAGTTGCAACTTTGCCAGCTGGCACC-TGGGAG-ACAACAGAT  1043
      |  |||||||||||||||||||||||||||||| |||||| |||||||| 
seq2  T--AAGGAAGTTGCAACTTTGCCAGCTGGCACCTTGGGAGAACAACAGAA  1048

seq1  CAAATCCTGAAAATACCTACCTAACAAAG  1072
        ||||||| |||||||||||||||||||
seq2  TCAATCCTG-AAATACCTACCTAACAAAG  1076

seq1: chr5_14213030_14214208
seq2: B6Ng01-197H22.g_66_1251 (reverse)

seq1  TTTCTCTTATTAAAAAGATTTGAGGTTGGATATTACACACCGTACGTTCC  50
      |||||| ||||||||||| |||| ||||  ||||| |||||||||| |||
seq2  TTTCTCCTATTAAAAAGA-TTGA-GTTGATTATTAAACACCGTACGGTCC  48

seq1  TATACAGTGAAATCCTC-AAGTGTTTGGAAGTG-AAGA-CCAATCATTCA  97
      ||  ||  | ||||||| ||| ||||| ||||| |||| ||| ||||  |
seq2  TA-CCA--GGAATCCTCAAAGGGTTTGAAAGTGAAAGACCCATTCATCAA  95

seq1  AGCATTTTGTTGAAGTGGTGAATGT-GGTCATTTCCATA-ACCATCT-AT  144
      ||||||||||||||||||||||||| ||||||||||||| ||||||| ||
seq2  AGCATTTTGTTGAAGTGGTGAATGTGGGTCATTTCCATATACCATCTAAT  145

seq1  GCCACTCAAGGGA--CAGTCTCT-CCAGAGCTTGTTTATTCATGGACTCG  191
      ||   ||||||||   ||| | | |||||||||| |||||||||||||||
seq2  GCACTTCAAGGGAACAAGTTTTTCCCAGAGCTTG-TTATTCATGGACTCG  194

seq1  GGAACTTAAAGCTCAAGTATTT-AAGAGGAGTA-TTATTACTGAAGGGAC  239
      | ||||| |||||||||||||| |||||||||| ||||||||||||| ||
seq2  GAAACTT-AAGCTCAAGTATTTAAAGAGGAGTATTTATTACTGAAGGAAC  243

seq1  ATTGCCAAGTGAATTTCTTT--GAACTACTAAAATCGAATTACTCTGTGC  287
      ||||||||||||||||||||   |||||||||||||||||||||||||||
seq2  ATTGCCAAGTGAATTTCTTTTGAAACTACTAAAATCGAATTACTCTGTGC  293

seq1  T-AAAATGTGAAGTGCTTGCCATCTGAGGGCTGTTTTATTTATTCAGACG  336
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGTGAAGTGCTTGCCATCTGAGGGCTGTTTTATTTATTCAGACG  343

seq1  AGAAATCAAATAAAAAATAGCTCTCCAAGCTAAACACAAGTTGTAGAACA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCAAATAAAAAATAGCTCTCCAAGCTAAACACAAGTTGTAGAACA  393

seq1  ATCCCTCCAATGAGAAGAAATAAAAATAAAATTCTTCACGTTTGTCCAAT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCCAATGAGAAGAAATAAAAATAAAATTCTTCACGTTTGTCCAAT  443

seq1  CTCCCTCATCCCAAAAGTACTTGGGAGATCATTTACTCCGTGTGGAAAGA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCATCCCAAAAGTACTTGGGAGATCATTTACTCCGTGTGGAAAGA  493

seq1  GCTGTAGCCACTGGACTGGAAACCTGATAACCTATGTGAGCCACAGCTCT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGCCACTGGACTGGAAACCTGATAACCTATGTGAGCCACAGCTCT  543

seq1  TTACACGATAGGAAGTAAAAAGAATTCACTTAGTTGAAAAAGCAGGAGAA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACGATAGGAAGTAAAAAGAATTCACTTAGTTGAAAAAGCAGGAGAA  593

seq1  ATTGAGCTGGAAAAATTGAGCTCCCTGACTTGGGATTTGGCAAGTTTGGT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGCTGGAAAAATTGAGCTCCCTGACTTGGGATTTGGCAAGTTTGGT  643

seq1  GTTGCCTACACGGACAAAGAAGAATGTATTAACGGGGAATGTATTTTATA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTACACGGACAAAGAAGAATGTATTAACGGGGAATGTATTTTATA  693

seq1  CCACACCTGTTCTGTTCTGGTGGATTAAATCAGGAGCCCAGCACAAAGAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCTGTTCTGTTCTGGTGGATTAAATCAGGAGCCCAGCACAAAGAG  743

seq1  GACCTGCCATCTTCTAATCATTCCTTGTGTCTTTGTTCCCTGAGTGACAC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCCATCTTCTAATCATTCCTTGTGTCTTTGTTCCCTGAGTGACAC  793

seq1  ACAATGGATAATGAATGCCTCATGAAGACTAACATAATGAGAAAATACTG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGATAATGAATGCCTCATGAAGACTAACATAATGAGAAAATACTG  843

seq1  ATAGAGAGCAATAGTCACAAGATGAACAGTATCATTTCTAATCTTTGAAA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAGCAATAGTCACAAGATGAACAGTATCATTTCTAATCTTTGAAA  893

seq1  AAAATTTTCACACAATGTGTTTTGTTCATGCTGTCTCCTCTCCCAACTCT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTCACACAATGTGTTTTGTTCATGCTGTCTCCTCTCCCAACTCT  943

seq1  TTCCAGATCACATTCCTATCCCTAACCACCCAAGTCTGTGTCCTTCTTTC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATCACATTCCTATCCCTAACCACCCAAGTCTGTGTCCTTCTTTC  993

seq1  TCATCCCCATCAAATCCAGTTTGTGTTGCCAATATACTCTTGGAGCTATG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCCATCAAATCCAGTTTGTGTTGCCAATATACTCTTGGAGCTATG  1043

seq1  GTTTTCAACTGGCAAGGAATCAATTGCTCATACCTCCTCCTCTAGACATG  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAACTGGCAAGGAATCAATTGCTCATACCTCCTCCTCTAGACATG  1093

seq1  GGACTCCTTGTCCACCTGCCCTCTCCATGTTGGAATTTTGTCTCGTTGAG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCTTGTCCACCTGCCCTCTCCATGTTGGAATTTTGTCTCGTTGAG  1143

seq1  TTCACACAGGCCCTGTGCATACTCTCATAATCACTGTGAATTC  1179
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACAGGCCCTGTGCATACTCTCATAATCACTGTGAATTC  1186