BAC Information

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BAC

Clone NameB6Ng01-197N06
Chromosome5 (Build37)
Map Location 63,954,314 - 63,955,465
singlet/doubletsinglet
Overlap genenone
Upstream geneCentd1
Downstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197N06.bB6Ng01-197N06.g
ACCGA019590GA019591
length1,1401,139
definitionB6Ng01-197N06.b B6Ng01-197N06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagggccactcagaaggaaggaaatcatgacttgtactagaaac
ccagccaaattccagaagccagtgaggtcacagatttcaggaaataattt
actactaccaatttgttagaccagcacaatttcttactacattataaatc
ttaaccttatacccatagttaaatataattgccatccctcatctgtggag
acgcgtgagcaattgccatcatgagcctccgctgtgcctaactggtaaac
aagtaatgtgcgcaggtgcaagagtaaattcgtgccaagtcactgcccat
cccggggcgtggtggtgaggctctgggagagcagccaatcaggtatggac
atgccacaataaggtgtatataagcaacacctttttggtgcttggggtct
tcctcttcatgttgaaactggtgtaataaagttgctgcagaaggatcccg
tttcccacgtgtgtgttcttgctggtgagacaatagcgcgtgtgagactc
atcaaatatgcttctctttatagaaaattgaggccgtcacttaaaaccac
agctagacacaatgtagagatcagtggattgatgggagtcccaatggata
tgtctagtccaaagttttttcttctgaatttttgtcaagttccagctttt
tagttcattaaaatctgtaaaattgcaaccttggaatgatctctggctac
atccacttctggtaaagagcctgtctgagagaccttgtgtcttagtcagg
gttcctattcctgcacaaacatcatgaccaagaaacaagttggggaggaa
agggtttattcagctaacatttccacattgctgtttaatcaccaaaggat
gtcaggactggaactcaggtaggttaggaagcaggagctgatgcagaggc
catggaagggatgttctttattggctttccttcccctggcctgctcagct
tgctttctttatagaacccaagactaccagcctcaggtaatggtcgcatc
cacaaggggcccttcccccttgatcacctaaatggagaaattgccctaca
gctggatcttggtggcagcattttcccaactgaagctcctttcctcgtga
taaactccggctagtgacccaaaaacttagcccaatggcc

gaattcactgacccacgtcaaagggatcactgaaaagacagaatgcgaat
gttctttagacttttttagctgaaggagaatgacaaaagttagcccttta
accctgaactcacctgatgtcgtgattgacagctctgtctgaaacctaaa
aagcaaaagaaagatggacaggagtcagcagactgtggaaaacatgaggc
tgtcgtaaagaacaaataaatgcctggcagctaccgagagatggactgag
aacaaacaccccagctcctttgtctgctcacccaagtgtcactcacctat
aaccatcatcagcacagtgaccatcaaaggataggattgattttgttcat
agaaaccaatcaatccccagagcagaacagaggtcatgtgggggaatcac
aagctatccagcagacaacaagtgaagatgcatacacaaacaggggctta
ggccactgggactcaataacaacactgaaactctgtctcaggtgttcttt
tggaagggagatcttgtctggtagggtctgggactccaaagggaaatgta
agcctaaccattataggaagcaaactattggcaaagagtttcttaattat
tacaattaagtgagagcaagtgtttctgataaattttttatgaccttaat
gttgttatgtctccctacacaatgtttatgagcattgctaaatttatgag
atggccacgaaaactgacttacctttctcatgaaatacatgatgtagaga
acacttgcctaagattcatctacatccttgtgaagtcgggagagttccag
agagaagttaccgtcgaccttgtagaagatgctagagctacgagtcaggg
accgtgaaggacctggagtttttctaattcagtctcaatagaagtcactt
ttctcctcaaagaataccaaggagcatgtagaaatacccctgataagtct
cagaacctgcactgttttctcacaccccagaaactgctggctaaaagctt
gacttctacagacatttgtcaccataatacagttttcagttttcctctca
gtgaatcttttgtcaacaatcaatagatgatattcaggctaaagattacg
aatagagatctatgtccgatgaaatcttaacgattcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_63954314_63955465
seq2: B6Ng01-197N06.g_67_1205

seq1  GAATTCACTGACCCACGTCAAAGGGATCACTGAAAAGACAGAATGCGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGACCCACGTCAAAGGGATCACTGAAAAGACAGAATGCGAAT  50

seq1  GTTCTTTAGACTTTTTTAGCTGAAGGAGAATGACAAAAGTTAGCCCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTAGACTTTTTTAGCTGAAGGAGAATGACAAAAGTTAGCCCTTTA  100

seq1  ACCCTGAACTCACCTGATGTCGTGATTGACAGCTCTGTCTGAAACCTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAACTCACCTGATGTCGTGATTGACAGCTCTGTCTGAAACCTAAA  150

seq1  AAGCAAAAGAAAGATGGACAGGAGTCAGCAGACTGTGGAAAACATGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAGAAAGATGGACAGGAGTCAGCAGACTGTGGAAAACATGAGGC  200

seq1  TGTCGTAAAGAACAAATAAATGCCTGGCAGCTACCGAGAGATGGACTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGTAAAGAACAAATAAATGCCTGGCAGCTACCGAGAGATGGACTGAG  250

seq1  AACAAACACCCCAGCTCCTTTGTCTGCTCACCCAAGTGTCACTCACCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACACCCCAGCTCCTTTGTCTGCTCACCCAAGTGTCACTCACCTAT  300

seq1  AACCATCATCAGCACAGTGACCATCAAAGGATAGGATTGATTTTGTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCATCAGCACAGTGACCATCAAAGGATAGGATTGATTTTGTTCAT  350

seq1  AGAAACCAATCAATCCCCAGAGCAGAACAGAGGTCATGTGGGGGAATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCAATCAATCCCCAGAGCAGAACAGAGGTCATGTGGGGGAATCAC  400

seq1  AAGCTATCCAGCAGACAACAAGTGAAGATGCATACACAAACAGGGGCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATCCAGCAGACAACAAGTGAAGATGCATACACAAACAGGGGCTTA  450

seq1  GGCCACTGGGACTCAATAACAACACTGAAACTCTGTCTCAGGTGTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTGGGACTCAATAACAACACTGAAACTCTGTCTCAGGTGTTCTTT  500

seq1  TGGAAGGGAGATCTTGTCTGGTAGGGTCTGGGACTCCAAAGGGAAATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGGAGATCTTGTCTGGTAGGGTCTGGGACTCCAAAGGGAAATGTA  550

seq1  AGCCTAACCATTATAGGAAGCAAACTATTGGCAAAGAGTTTCTTAATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAACCATTATAGGAAGCAAACTATTGGCAAAGAGTTTCTTAATTAT  600

seq1  TACAATTAAGTGAGAGCAAGTGTTTCTGATAAATTTTTTATGACCTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTAAGTGAGAGCAAGTGTTTCTGATAAATTTTTTATGACCTTAAT  650

seq1  GTTGTTATGTCTCCCTACACAATGTTTATGAGCATTGCTAAATTTATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTATGTCTCCCTACACAATGTTTATGAGCATTGCTAAATTTATGAG  700

seq1  ATGGCCACGAAAACTGACTTACCTTTCTCATGAAATACATGATGTAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCACGAAAACTGACTTACCTTTCTCATGAAATACATGATGTAGAGA  750

seq1  ACACTTGCCTAAGATTCATCTACATCCTTGTGAAGTCGGGAGAGTTCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGCCTAAGATTCATCTACATCCTTGTGAAGTCGGGAGAGTTCCAG  800

seq1  AGAGAAGTTACCGTCGACCTTGTAGAAGATGCTAGAGCTACGAGTCAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTTACCGTCGACCTTGTAGAAGATGCTAGAGCTACGAGTCAGGG  850

seq1  ACCGTGAAGGACCTGGAGTTTTTCTAATTCAGTCTCAATAGAAGTCACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGAAGGACCTGGAGTTTTTCTAATTCAGTCTCAATAGAAGTCACTT  900

seq1  TTCTCCTCAAAGAATACC-AGGAGCATGTAGAAATACCCCTGATAAGTCT  949
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCTCCTCAAAGAATACCAAGGAGCATGTAGAAATACCCCTGATAAGTCT  950

seq1  CAG-ACCTGCACTGTTTTCTCACCACCCCAGAAACTGCTTGGCTAAAAGC  998
      ||| |||||||||||||||||| ||||||||||||||| |||||||||||
seq2  CAGAACCTGCACTGTTTTCTCA-CACCCCAGAAACTGC-TGGCTAAAAGC  998

seq1  -TGACTTCTACAGACATTTTGTCACCAT-ATACAGTTTTCAGTTTTCCTC  1046
       ||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  TTGACTTCTACAGACA-TTTGTCACCATAATACAGTTTTCAGTTTTCCTC  1047

seq1  TTCAAGTGATCTTTTTGTCCAACAAATCAATAGATGAATATTTCAGCCTA  1096
      |   |||||   |||||| |||| |||||||||||| ||| ||||| || 
seq2  T--CAGTGAATCTTTTGT-CAAC-AATCAATAGATG-ATA-TTCAGGCT-  1090

seq1  AAAGATTACGAATAAGAGATCTATTGTCCCCGATGAAATCTTAACAGATA  1146
      ||||||||||||| ||||||||| |||  ||||||||||||||||    |
seq2  AAAGATTACGAAT-AGAGATCTA-TGT--CCGATGAAATCTTAAC---GA  1133

seq1  TTCCCC  1152
      ||||||
seq2  TTCCCC  1139


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