BAC Information

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BAC

Clone NameB6Ng01-198D21
Chromosome5 (Build37)
Map Location 48,337,465 - 48,449,775
singlet/doubletdoublet
Overlap geneLOC100040876, Slit2
Upstream geneLOC100040865
Downstream gene4933428G09Rik, Kcnip4, LOC100041668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198D21.bB6Ng01-198D21.g
ACCGA019889GA019890
length9771,076
definitionB6Ng01-198D21.b B6Ng01-198D21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,337,465 - 48,338,364)(48,448,700 - 48,449,775)
sequence
gaattcagagatttgactgcctttgtaaccatgacaaaaagctggctggg
tgggatcctaccctgaacttaccattcccaccattcttgaccctaaactc
tctctgtctcacactttttagaaacactatatatatatatatatatatat
atatatatatatatatatatacactgaatgtttttaaaattgtttttaga
ctactttagacagccttcaggctgtcctttccacaatggtcatgcagtac
ttgatacttctaacttcttacctacccaaattcatgtagtctctcactct
atctcactcacattctgtctttctctatttaaaaaaaatcaaaattgaaa
taaacaagtgatttaaaaaataagacaacagcaacagcaagacccagcgt
gcgcatacacacacacacacacacacacggattactttttgtgttagcca
actattccttggcatctggcaaggaattgaagagtggttgatatacccag
tgtcactctattgtataaaactggttttctgtttctagtagatatcaatc
acaaattgcttcttgaatgggaattttatgtctatctccatgctgggatt
tttgcctgatttgaacttgtataattcttatgcatgctgtcaccaacttt
gtgaattcatatgtttatcagcctatcatgtctggaagatgctgtttcct
tggaatcatccactacattcacctcttaaaaatttttccacctcctcttg
cagatagaatggtgagccttgaggggaaggattggtaaaagacatccgat
ttatgaccgatttctccaaagtctcatactctctgcatatggtcctgttg
tgagtttctatgttaatttcccatctactgtgagaagcagcttctctgac
gagggttgaggattgcttttctctatgggtatctcaataccaccatttag
gagtcatttttatccctaagtttcctt
gaattccttcaccacacagaacaatgaattctataaactagggaggataa
caaaaggtaaaataaatgccatctcagaaatcattgtcaaaacttccagt
taaagagccagatttcatttaaacacttaaaggaagaaaaaaaaatcttc
cttcggaatacattcaacatggtgtacaaataagggaaaaataattacgt
aaaatctgagttgagaattcccagaggaattactgtaagattcacttaga
gtcactatgtgccacttatcaatgggttagacttcagttgggttttgaaa
gggaagaatcaatgagaatggttgaagacacaacaaaagaaacaaacacc
cccccccaaaaaaaacctacttgtgatggaattctaaagaataaggaata
aaagttccaaattaaagcagtaggtcaaacagtctgctgtctggagtaca
agcatccataatagattgaacacaatgtgtcaaatattagggcttgagac
aagatttaggggcattaactatccttcaagagatcaacttaagaaactca
gcataagtcagacatatttcagcagacacagaaatgatctgattagaaag
aaaaacaaccaaacaagaaatgccagtcagaagggctgtgtgacagtcaa
aattatctaagcatattttagacatgccgctaataacttttcttgtaaat
tgaatcttccctaaaatggaaatagctttacaacgataaatgtcagaata
agcagtttatttttaatgctatttattctgcaactacttgctaaacagat
ttttaaagggcacagatatggaaaaactgggaaaagagcatttagtagta
agtgagagtaagcaagcagaaatcacgaacgtgtgcatgagtacaaatgg
aagtctggatttctggagaccaaagcaaggctaaattaggcagtttgcag
tcatacttttccttactccatgaaacaatgttgaacataaaaattacagg
aaataaagagtatagtcactagtttgagccttttaccccaagccactctt
atagaacattaaataggacggataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_48337465_48338364
seq2: B6Ng01-198D21.b_45_946

seq1  GAATTCAGAGATTTGACTGCCTTTGTAACCATGACAAAAAGCTGGCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGATTTGACTGCCTTTGTAACCATGACAAAAAGCTGGCTGGG  50

seq1  TGGGATCCTACCCTGAACTTACCATTCCCACCATTCTTGACCCTAAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCCTACCCTGAACTTACCATTCCCACCATTCTTGACCCTAAACTC  100

seq1  TCTCTGTCTCACACTTTTTAGAAACACTATATATATATATATATATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTCACACTTTTTAGAAACACTATATATATATATATATATATAT  150

seq1  ATATATATATATATATATATACACTGAATGTTTTTAAAATTGTTTTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATACACTGAATGTTTTTAAAATTGTTTTTAGA  200

seq1  CTACTTTAGACAGCCTTCAGGCTGTCCTTTCCACAATGGTCATGCAGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTAGACAGCCTTCAGGCTGTCCTTTCCACAATGGTCATGCAGTAC  250

seq1  TTGATACTTCTAACTTCTTACCTACCCAAATTCATGTAGTCTCTCACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACTTCTAACTTCTTACCTACCCAAATTCATGTAGTCTCTCACTCT  300

seq1  ATCTCACTCACATTCTGTCTTTCTCTATTTAAAAAAAATCAAAATTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACTCACATTCTGTCTTTCTCTATTTAAAAAAAATCAAAATTGAAA  350

seq1  TAAACAAGTGATTTAAAAAATAAGACAACAGCAACAGCAAGACCCAGCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGTGATTTAAAAAATAAGACAACAGCAACAGCAAGACCCAGCGT  400

seq1  GCGCATACACACACACACACACACACACGGATTACTTTTTGTGTTAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCATACACACACACACACACACACACGGATTACTTTTTGTGTTAGCCA  450

seq1  ACTATTCCTTGGCATCTGGCAAGGAATTGAAGAGTGGTTGATATACCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCCTTGGCATCTGGCAAGGAATTGAAGAGTGGTTGATATACCCAG  500

seq1  TGTCACTCTATTGTATAAAACTGGTTTTCTGTTTCTAGTAGATATCAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTCTATTGTATAAAACTGGTTTTCTGTTTCTAGTAGATATCAATC  550

seq1  ACAAATTGCTTCTTGAATGGGAATTTTATGTCTATCTCCATGCTGGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTGCTTCTTGAATGGGAATTTTATGTCTATCTCCATGCTGGGATT  600

seq1  TTTGCCTGATTTGAACTTGTATAATTCTTATGCATGCTGTCACCAACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGATTTGAACTTGTATAATTCTTATGCATGCTGTCACCAACTTT  650

seq1  GTGAATTCATATGTTTATCAGCCTATCATGTCTGGAAGATGCTGTTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTCATATGTTTATCAGCCTATCATGTCTGGAAGATGCTGTTTCCT  700

seq1  TGGAATCATCCACTACATTCACCTCTTAAAAATTTTTCCACCTCCTCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCATCCACTACATTCACCTCTTAAAAATTTTTCCACCTCCTCTTG  750

seq1  CAGATAGAATGGTGAGCCTTGAGGGGAAGGATTGGT-AAAGACATCCGAT  799
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGATAGAATGGTGAGCCTTGAGGGGAAGGATTGGTAAAAGACATCCGAT  800

seq1  TTATGACCGATTTCTCCAAAGTCTCATACTCTCTGCATATGGTCCTGTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACCGATTTCTCCAAAGTCTCATACTCTCTGCATATGGTCCTGTTG  850

seq1  TGAGTTTCTATGTTAATTT-CCATCTACTGTGAGAAGCAGCTTCTCTGAC  898
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGAGTTTCTATGTTAATTTCCCATCTACTGTGAGAAGCAGCTTCTCTGAC  900

seq1  GA  900
      ||
seq2  GA  902

seq1: chr5_48448700_48449775
seq2: B6Ng01-198D21.g_66_1141 (reverse)

seq1  ATTAT-CGTCTTATTTAAATGTCTATAAGAGTGCTTTGGGGTTAAAAGCT  49
      ||||| |||| |||||||   ||||||||||||  ||||||| ||| |||
seq2  ATTATCCGTCCTATTTAATGTTCTATAAGAGTGGCTTGGGGTAAAAGGCT  50

seq1  CAAACTAGTGACTATACTCTTTATTTCCTGTAATTTTTTATG-TCAACAT  98
      ||||||||||||||||||||||||||||||||| |||||||| |||||| 
seq2  CAAACTAGTGACTATACTCTTTATTTCCTGTAA-TTTTTATGTTCAACA-  98

seq1  TTGTTTCATGGAGTAAGGAAAAGTATGACTGCAAACTGCCTAATTTAGCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCATGGAGTAAGGAAAAGTATGACTGCAAACTGCCTAATTTAGCC  148

seq1  TTGCTTTGGTCTCCAGAAATCCAGACTTCCATTTGTACTCATGCACACGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGGTCTCCAGAAATCCAGACTTCCATTTGTACTCATGCACACGT  198

seq1  TCCTGATTTCTGCTTGCTTACTCTCACTTACTACTAAATGCTCTTTTCCC  248
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGATTTCTGCTTGCTTACTCTCACTTACTACTAAATGCTCTTTTCCC  248

seq1  AGTTTTTCCATATCTGTGCCCTTTAAAAATCTGTTTAGCAAGTAGTTGCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTCCATATCTGTGCCCTTTAAAAATCTGTTTAGCAAGTAGTTGCA  298

seq1  GAATAAATAGCATTAAAAATAAACTGCTTATTCTGACATTTATCGTTGTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATAGCATTAAAAATAAACTGCTTATTCTGACATTTATCGTTGTA  348

seq1  AAGCTATTTCCATTTTAGGGAAGATTCAATTTACAAGAAAAGTTATTAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATTTCCATTTTAGGGAAGATTCAATTTACAAGAAAAGTTATTAGC  398

seq1  GGCATGTCTAAAATATGCTTAGATAATTTTGACTGTCACACAGCCCTTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTCTAAAATATGCTTAGATAATTTTGACTGTCACACAGCCCTTCT  448

seq1  GACTGGCATTTCTTGTTTGGTTGTTTTTCTTTCTAATCAGATCATTTCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCATTTCTTGTTTGGTTGTTTTTCTTTCTAATCAGATCATTTCTG  498

seq1  TGTCTGCTGAAATATGTCTGACTTATGCTGAGTTTCTTAAGTTGATCTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTGAAATATGTCTGACTTATGCTGAGTTTCTTAAGTTGATCTCT  548

seq1  TGAAGGATAGTTAATGCCCCTAAATCTTGTCTCAAGCCCTAATATTTGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGATAGTTAATGCCCCTAAATCTTGTCTCAAGCCCTAATATTTGAC  598

seq1  ACATTGTGTTCAATCTATTATGGATGCTTGTACTCCAGACAGCAGACTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTGTTCAATCTATTATGGATGCTTGTACTCCAGACAGCAGACTGT  648

seq1  TTGACCTACTGCTTTAATTTGGAACTTTTATTCCTTATTCTTTAGAATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTACTGCTTTAATTTGGAACTTTTATTCCTTATTCTTTAGAATTC  698

seq1  CATCACAAGTAGGTTTTTTTTGGGGGGGGGTGTTTGTTTCTTTTGTTGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAAGTAGGTTTTTTTTGGGGGGGGGTGTTTGTTTCTTTTGTTGTG  748

seq1  TCTTCAACCATTCTCATTGATTCTTCCCTTTCAAAACCCAACTGAAGTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAACCATTCTCATTGATTCTTCCCTTTCAAAACCCAACTGAAGTCT  798

seq1  AACCCATTGATAAGTGGCACATAGTGACTCTAAGTGAATCTTACAGTAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATTGATAAGTGGCACATAGTGACTCTAAGTGAATCTTACAGTAAT  848

seq1  TCCTCTGGGAATTCTCAACTCAGATTTTACGTAATTATTTTTCCCTTATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGGAATTCTCAACTCAGATTTTACGTAATTATTTTTCCCTTATT  898

seq1  TGTACACCATGTTGAATGTATTCCGAAGGAAGATTTTTTTTTCTTCCTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACCATGTTGAATGTATTCCGAAGGAAGATTTTTTTTTCTTCCTTT  948

seq1  AAGTGTTTAAATGAAATCTGGCTCTTTAACTGGAAGTTTTGACAATGATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTAAATGAAATCTGGCTCTTTAACTGGAAGTTTTGACAATGATT  998

seq1  TCTGAGATGGCATTTATTTTACCTTTTGTTATCCTCCCTAGTTTATAGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATGGCATTTATTTTACCTTTTGTTATCCTCCCTAGTTTATAGAA  1048

seq1  TTCATTGTTCTGTGTGGTGAAGGAATTC  1076
      ||||||||||||||||||||||||||||
seq2  TTCATTGTTCTGTGTGGTGAAGGAATTC  1076