BAC Information

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BAC

Clone NameB6Ng01-198K10
Chromosome5 (Build37)
Map Location 98,835,441 - 98,950,370
singlet/doubletdoublet
Overlap gene1700007G11Rik
Upstream geneGk2, Antxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5
Downstream geneBmp3, Prkg2, LOC100041680, Rasgef1b, A930011G23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198K10.bB6Ng01-198K10.g
ACCGA020192GA020193
length1,1251,069
definitionB6Ng01-198K10.b B6Ng01-198K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,949,239 - 98,950,370)(98,835,441 - 98,836,491)
sequence
gaattccatttttgcactggacaataggaaaactaatgaaaatagtattt
gcacttgttacactctactgtttaaaactcatcaggctgaacaaatatcc
tcctgatgcacttgggcatccacaaagctctaaagatctttattctttag
agagttacagaaaccaagccttccaatatttcgacaaggacagtccacca
cctcctaaagtggttttttcttttagtataatgtccagattttagacata
tttgcatgaacatcataatacaattagcaggattctttagctaaataata
gcacagagaaaagccctttaatattgtgaaagttattcagattgtatgtt
aatttgcttgtataaaaatgcacaaggcattagtcccacttgaaaatgta
acattatttaacatgatgtaaactaattttaaaagcttatggttgggaat
acagtacacagagttcaaatatcatgtataggtgtattaaaggccttgga
aatttttcaaaggaatttatccataccccatgctttatactgggtcctag
gcccagatctattagtcttaagaactaagatccctaaatatacaattaaa
tcatatttaagtatgggcaatcctcactcagcctgtacgaaatatttcac
agaacattttcttcatttcgtctgattttttctttttctttttctttttc
ttttctttcctttttttatatttttagagctttattgtagaaaggcaggg
agaaagagagaagatagaaagagggagagaggctggctatggccacgtgg
tgagaggcggggaagggagagagagaagaagggctagagatgaaagtaaa
aaaggtgaaagcttaaagagcttgtctgattttttcatctctttcacaca
caacacactgtgagcttccctgtttcccacaagtatttccaacccacttc
tcaccctctgcacattgctatgttcttctcttttttctcgttaaacctcc
cagtctcatccagttgtcacattctgctctctatcagcggctaagatgac
atggttcctttaacaaacttaactctttaaaaaaatagagtaaaaatgta
ggtagcatatagcagtttaagtaca

gaattcagtagggtggtgtgcttggagatactaatttttgagtcataaaa
gtgtgggggtatttaaacttatataaaaggtgtgagccctgcaatattat
actattatgtttatgtggaaaagagccacaaaagactaaaggaagtggga
tgtattgaataaaaaatggaagtattttaaagatgtctttataaacaaaa
atatacatttgtttttgtttgtaaaagcataatggtaatgttctcattat
tgtatgaagctattagaacacataaaatggaagttacactgtacaaatag
tttgcatgatactaaaatggagccacttcaaatacagctttgaagtaaac
acaatagaaataaattattcagttaaacagtcagttgcaagtcaagagtc
ataatatttgacaatctgcagacagtgttttcttcaccactagcagtaaa
tcacgtgcactgagtaacttccttgctacccaaaggaaggacgtcttggt
aacatcaccaaaacccggactccttgctgggcactttggaaagctggtca
tggggactttcctgcctggaattgacagtcaaacaagctgcctcgtaggt
acttggaaatattttcttctgtgatttcacacttactaagttaaatgagt
gacagatattttaatccactaagtccctttggcttggatagattcacaga
gtaagaggaaatacccttttaatatgttctttgagtacctagagtgctat
ttgaacttgactcattataaatgttgatatgtggtaaattacttcaggtg
atacatatttgttggttctacatatttgcatatacacataaacacacaca
cacacacacacacacacacacacacacacacacacacgtttctacttgac
accaaccatgtatcatgccccttgggttctaaaggtactggctgtagttt
tgaagtttggtagaccgggtttcctcttgaagccaacgttaattttggta
gaataatcctgcccccttgatgaagatcaattcctccaaatgccctccag
aaccctctgtaggcccata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_98949239_98950370
seq2: B6Ng01-198K10.b_48_1172 (reverse)

seq1  TGTACTTTAAAAACTTCTATATGCTACTTACATTTTTTAATTCTTATTTT  50
      |||||||   ||||| ||||||||||| |||||||||  | ||   | ||
seq2  TGTACTT---AAACTGCTATATGCTACCTACATTTTT--ACTC---TATT  42

seq1  TTTTTAAAGAGTT-AGTTTGTTTAAGGAACC-TGTCTTCCTTAG-CGCTG  97
      ||||||||||||| |||||||| |||||||| |||| | ||||| |||||
seq2  TTTTTAAAGAGTTAAGTTTGTTAAAGGAACCATGTCAT-CTTAGCCGCTG  91

seq1  ATAGAGAGCAGATGTTGACAACTGGATGAGACTGGGAGGTTTAACGAGAA  147
      ||||||||||||   ||||||||||||||||||||||||||||||||| |
seq2  ATAGAGAGCAGAATGTGACAACTGGATGAGACTGGGAGGTTTAACGAG-A  140

seq1  AAAAAGAGAAGAACATAGCAATGTTGCAGAGGGTGAGAAGTGGTTTGG-A  196
      ||||||||||||||||||||||| ||||||||||||||||||| |||| |
seq2  AAAAAGAGAAGAACATAGCAATG-TGCAGAGGGTGAGAAGTGGGTTGGAA  189

seq1  ATACTTGTGGGAAACAGGGAAGCTCACAGTGTGTTGTGTGTGAAAGAGAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGTGGGAAACAGGGAAGCTCACAGTGTGTTGTGTGTGAAAGAGAT  239

seq1  GAAAAAATCAGACAAGCTCTTTAAGCTTTCACCTTTTTTACTTTCATCTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATCAGACAAGCTCTTTAAGCTTTCACCTTTTTTACTTTCATCTC  289

seq1  TAGCCCTTCTTCTCTCTCTCCCTTCCCCGCCTCTCACCACGTGGCCATAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTTCTTCTCTCTCTCCCTTCCCCGCCTCTCACCACGTGGCCATAG  339

seq1  CCAGCCTCTCTCCCTCTTTCTATCTTCTCTCTTTCTCCCTGCCTTTCTAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCTCTCCCTCTTTCTATCTTCTCTCTTTCTCCCTGCCTTTCTAC  389

seq1  AATAAAGCTCTAAAAATATAAAAAAAGGAAAGAAAAGAAAAAGAAAAAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCTCTAAAAATATAAAAAAAGGAAAGAAAAGAAAAAGAAAAAGA  439

seq1  AAAAGAAAAAATCAGACGAAATGAAGAAAATGTTCTGTGAAATATTTCGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAATCAGACGAAATGAAGAAAATGTTCTGTGAAATATTTCGT  489

seq1  ACAGGCTGAGTGAGGATTGCCCATACTTAAATATGATTTAATTGTATATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTGAGTGAGGATTGCCCATACTTAAATATGATTTAATTGTATATT  539

seq1  TAGGGATCTTAGTTCTTAAGACTAATAGATCTGGGCCTAGGACCCAGTAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATCTTAGTTCTTAAGACTAATAGATCTGGGCCTAGGACCCAGTAT  589

seq1  AAAGCATGGGGTATGGATAAATTCCTTTGAAAAATTTCCAAGGCCTTTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGGGGTATGGATAAATTCCTTTGAAAAATTTCCAAGGCCTTTAA  639

seq1  TACACCTATACATGATATTTGAACTCTGTGTACTGTATTCCCAACCATAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTATACATGATATTTGAACTCTGTGTACTGTATTCCCAACCATAA  689

seq1  GCTTTTAAAATTAGTTTACATCATGTTAAATAATGTTACATTTTCAAGTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAAATTAGTTTACATCATGTTAAATAATGTTACATTTTCAAGTG  739

seq1  GGACTAATGCCTTGTGCATTTTTATACAAGCAAATTAACATACAATCTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAATGCCTTGTGCATTTTTATACAAGCAAATTAACATACAATCTGA  789

seq1  ATAACTTTCACAATATTAAAGGGCTTTTCTCTGTGCTATTATTTAGCTAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTCACAATATTAAAGGGCTTTTCTCTGTGCTATTATTTAGCTAA  839

seq1  AGAATCCTGCTAATTGTATTATGATGTTCATGCAAATATGTCTAAAATCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCTGCTAATTGTATTATGATGTTCATGCAAATATGTCTAAAATCT  889

seq1  GGACATTATACTAAAAGAAAAAACCACTTTAGGAGGTGGTGGACTGTCCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTATACTAAAAGAAAAAACCACTTTAGGAGGTGGTGGACTGTCCT  939

seq1  TGTCGAAATATTGGAAGGCTTGGTTTCTGTAACTCTCTAAAGAATAAAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGAAATATTGGAAGGCTTGGTTTCTGTAACTCTCTAAAGAATAAAGA  989

seq1  TCTTTAGAGCTTTGTGGATGCCCAAGTGCATCAGGAGGATATTTGTTCAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGAGCTTTGTGGATGCCCAAGTGCATCAGGAGGATATTTGTTCAG  1039

seq1  CCTGATGAGTTTTAAACAGTAGAGTGTAACAAGTGCAAATACTATTTTCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGAGTTTTAAACAGTAGAGTGTAACAAGTGCAAATACTATTTTCA  1089

seq1  TTAGTTTTCCTATTGTCCAGTGCAAAAATGGAATTC  1132
      ||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTCCTATTGTCCAGTGCAAAAATGGAATTC  1125


seq1: chr5_98835441_98836491
seq2: B6Ng01-198K10.g_64_1132

seq1  GAATTCAGTAGGGTGGTGTGCTTGGAGATACTAATTTTTGAGTCATAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGGGTGGTGTGCTTGGAGATACTAATTTTTGAGTCATAAAA  50

seq1  GTGTGGGGGTATTTAAACTTATATAAAAGGTGTGAGCCCTGCAATATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGGGTATTTAAACTTATATAAAAGGTGTGAGCCCTGCAATATTAT  100

seq1  ACTATTATGTTTATGTGGAAAAGAGCCACAAAAGACTAAAGGAAGTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTATGTTTATGTGGAAAAGAGCCACAAAAGACTAAAGGAAGTGGGA  150

seq1  TGTATTGAATAAAAAATGGAAGTATTTTAAAGATGTCTTTATAAACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGAATAAAAAATGGAAGTATTTTAAAGATGTCTTTATAAACAAAA  200

seq1  ATATACATTTGTTTTTGTTTGTAAAAGCATAATGGTAATGTTCTCATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATTTGTTTTTGTTTGTAAAAGCATAATGGTAATGTTCTCATTAT  250

seq1  TGTATGAAGCTATTAGAACACATAAAATGGAAGTTACACTGTACAAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAAGCTATTAGAACACATAAAATGGAAGTTACACTGTACAAATAG  300

seq1  TTTGCATGATACTAAAATGGAGCCACTTCAAATACAGCTTTGAAGTAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATGATACTAAAATGGAGCCACTTCAAATACAGCTTTGAAGTAAAC  350

seq1  ACAATAGAAATAAATTATTCAGTTAAACAGTCAGTTGCAAGTCAAGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGAAATAAATTATTCAGTTAAACAGTCAGTTGCAAGTCAAGAGTC  400

seq1  ATAATATTTGACAATCTGCAGACAGTGTTTTCTTCACCACTAGCAGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTTGACAATCTGCAGACAGTGTTTTCTTCACCACTAGCAGTAAA  450

seq1  TCACGTGCACTGAGTAACTTCCTTGCTACCCAAAGGAAGGACGTCTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGCACTGAGTAACTTCCTTGCTACCCAAAGGAAGGACGTCTTGGT  500

seq1  AACATCACCAAAACCCGGACTCCTTGCTGGGCACTTTGGAAAGCTGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCACCAAAACCCGGACTCCTTGCTGGGCACTTTGGAAAGCTGGTCA  550

seq1  TGGGGACTTTCCTGCCTGGAATTGACAGTCAAACAAGCTGCCTCGTAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACTTTCCTGCCTGGAATTGACAGTCAAACAAGCTGCCTCGTAGGT  600

seq1  ACTTGGAAATATTTTCTTCTGTGATTTCACACTTACTAAGTTAAATGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAAATATTTTCTTCTGTGATTTCACACTTACTAAGTTAAATGAGT  650

seq1  GACAGATATTTTAATCCACTAAGTCCCTTTGGCTTGGATAGATTCACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATATTTTAATCCACTAAGTCCCTTTGGCTTGGATAGATTCACAGA  700

seq1  GTAAGAGGAAATACCCTTTTAATATGTTCTTTGAGTACCTAGAGTGCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGGAAATACCCTTTTAATATGTTCTTTGAGTACCTAGAGTGCTAT  750

seq1  TTGAACTTGACTCATTATAAATGTTGATATGTGGTAAATTACTTCAGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTGACTCATTATAAATGTTGATATGTGGTAAATTACTTCAGGTG  800

seq1  ATACATATTTGTTGGTTCTACATATTTGCATATACACATAAACACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATTTGTTGGTTCTACATATTTGCATATACACATAAACACACACA  850

seq1  CACACACACACACACACACACACACACACACACACACG-TTCTACTTGAC  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CACACACACACACACACACACACACACACACACACACGTTTCTACTTGAC  900

seq1  ACC-ACCATGTATCATG-CCCTTGGTTTCT-AAGGTACTGGCTGTAGTTT  946
      ||| ||||||||||||| ||||||| |||| |||||||||||||||||||
seq2  ACCAACCATGTATCATGCCCCTTGGGTTCTAAAGGTACTGGCTGTAGTTT  950

seq1  TG-AGTTTGGTAGAC--GGGTTCCTCT--GAGCCAACGTTA--TTTTGTA  989
      || ||||||||||||  || |||||||   |||||||||||  ||| |||
seq2  TGAAGTTTGGTAGACCGGGTTTCCTCTTGAAGCCAACGTTAATTTTGGTA  1000

seq1  GTATAATTCTTGCCCCCTTG-TGTAGATCA--TTCTCC-AATGCCCTCCA  1035
      | |||| || |||||||||| || ||||||  | |||| |||||||||||
seq2  GAATAA-TCCTGCCCCCTTGATGAAGATCAATTCCTCCAAATGCCCTCCA  1049

seq1  GA--CCTCTGTAG--CCATA  1051
      ||  |||||||||  |||||
seq2  GAACCCTCTGTAGGCCCATA  1069


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