BAC Information

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BAC

Clone NameB6Ng01-199C16
Chromosome5 (Build37)
Map Location 116,957,268 - 117,105,356
singlet/doubletdoublet
Overlap gene1500001A10Rik, LOC433943, Gm1684
Upstream genePxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8
Downstream geneLOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199C16.bB6Ng01-199C16.g
ACCGA020571GA020572
length1,1311,146
definitionB6Ng01-199C16.b B6Ng01-199C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,957,268 - 116,958,398)(117,104,215 - 117,105,356)
sequence
gaattcagatccccaagtgcaacatcaatcaaatcatagagaacagctcc
ccaactccttcccccggcagcttggggggaaaatacatcttccttctctc
cccactttgatcctccttccctcaaaaaagagacctggactcatgatgct
gtgccaataaatggctgcttgagtagcaagtaaggagggaaggtgggcca
ggtctatttttagccaccgctgatattctgtgacagctgtcactctctta
tcaaataaacctgggtgttgcttgagtttggagtgaatgcatggtaagga
atagaaccctgtttgtttaaaagggtgtttagggcgagcactaaggacca
aggcttgcggtcacctctcacagaactcttacaactctttctaggaaggt
gtcacctctactctcttcacaagtctgccagaaaggctctatcattggca
cccattctgcagatgaaaacactgaggtttactgcagccaaagcttccca
gttagtgagcagcatgagatccaatgctgacgagtttgaccatgcacccc
aggcttccagactcatttgacttgtagacctcaagagctgtgtttataca
aagggacagctgcctcttccaacccctctctgggaatgagtgatcagcca
cacccatctgctaatatctcactaagactcagtcatccactcatccggtg
atttctgagtgtctgccggacgagggttgctggtgagatatcaggaaagg
aaagctctgagcctcgttcctaagagtgatggggtggacgcagacaagac
cagcgctggaaagtagtcaccatggcaaccacatagctgaaactcctgca
ctcttgccatatgccaagagggcagacattagaagatgtgattctcttct
cctcaagttccgaacccagaaagaatccagtttaccatgggaaaattctc
agacacccgctcgttaccttcccagggctgacagtagactgaggaaagac
tagaaggtatttctctgacactgacatattttccacttgggggtgttgtc
tccaggctgtctgtatttggacggtcattagaattatgtgtctcacttga
attcaaaaataaaccgtttctgaaagacttt
gaattccattatgcgcattccacgtttccctccccattcacccatcagtt
gatgaatacctacgctgcttccacgagctggctattgttagaaaaagcag
tgggtgtgtacgagcacgcgcctctacactagcaagcagagtcctttgga
tatatgcctgggagtggaatatcatggagtcacatggtggtctattccaa
ctttgtgaggaatctccacactgatttctatctcggctacgccagcctac
actcccaccaacagtgaataactctggacagtttggaggattttaggtga
agccaaagaatcaggatgcctctttgcaggtgtttaccttggtttttagc
cataagtggtcagatttgggctcccaaagcgatctgggctctgtagtgtg
tgagttgactgggcacggatccaaacatagtgacacagatgcaggcaaag
taaatctagaggcaggaaagggatgaggactcactcaaggttgtagaatt
gcgtagacaagtttgccgtagtatgagtaatagccctaaaaaatggtgaa
tgagaagagagacttattggctacattgtttccttccacgagtgagtttc
caacatctcctagaattcctgaggagcttccagtaggcagacacaggctg
aagaatgtgaacattttggagcatgtactaaatgcccccacctcgcttag
tcattgtgatcatctgcttgacagagacagtgtgagacaggaagggttta
ttctgattcattgtttcaaggaatcgggcccatgcagggcagcggggatg
atgggggctgctctcctgtgctctgttgagcaggaggcagagggaagtag
agtatgctggtgcttgcttcctcttccctttttatgttgcctgggtccta
acctgatgagaggatgccacttcacattcacagtgagttttcttctctgt
ttgaccctcccccgcccgccccctcacgaactctatgaatagaacacacc
cacaggtctgtgttaagtcaagcttctaagtgatctcatttctgtcaagt
tgacaatcagattcaacgtgaacagaagagatcaagaaggcttagttaag
ccacaaagttggtggaagatacagtcaagttcagaatctccacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_116957268_116958398
seq2: B6Ng01-199C16.b_42_1172

seq1  GAATTCAGATCCCCAAGTGCAACATCAATCAAATCATAGAGAACAGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCCCCAAGTGCAACATCAATCAAATCATAGAGAACAGCTCC  50

seq1  CCAACTCCTTCCCCCGGCAGCTTGGGGGGAAAATACATCTTCCTTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCCTTCCCCCGGCAGCTTGGGGGGAAAATACATCTTCCTTCTCTC  100

seq1  CCCACTTTGATCCTCCTTCCCTCAAAAAAGAGACCTGGACTCATGATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTTGATCCTCCTTCCCTCAAAAAAGAGACCTGGACTCATGATGCT  150

seq1  GTGCCAATAAATGGCTGCTTGAGTAGCAAGTAAGGAGGGAAGGTGGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAATAAATGGCTGCTTGAGTAGCAAGTAAGGAGGGAAGGTGGGCCA  200

seq1  GGTCTATTTTTAGCCACCGCTGATATTCTGTGACAGCTGTCACTCTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTATTTTTAGCCACCGCTGATATTCTGTGACAGCTGTCACTCTCTTA  250

seq1  TCAAATAAACCTGGGTGTTGCTTGAGTTTGGAGTGAATGCATGGTAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAAACCTGGGTGTTGCTTGAGTTTGGAGTGAATGCATGGTAAGGA  300

seq1  ATAGAACCCTGTTTGTTTAAAAGGGTGTTTAGGGCGAGCACTAAGGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACCCTGTTTGTTTAAAAGGGTGTTTAGGGCGAGCACTAAGGACCA  350

seq1  AGGCTTGCGGTCACCTCTCACAGAACTCTTACAACTCTTTCTAGGAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGCGGTCACCTCTCACAGAACTCTTACAACTCTTTCTAGGAAGGT  400

seq1  GTCACCTCTACTCTCTTCACAAGTCTGCCAGAAAGGCTCTATCATTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTCTACTCTCTTCACAAGTCTGCCAGAAAGGCTCTATCATTGGCA  450

seq1  CCCATTCTGCAGATGAAAACACTGAGGTTTACTGCAGCCAAAGCTTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCTGCAGATGAAAACACTGAGGTTTACTGCAGCCAAAGCTTCCCA  500

seq1  GTTAGTGAGCAGCATGAGATCCAATGCTGACGAGTTTGACCATGCACCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGAGCAGCATGAGATCCAATGCTGACGAGTTTGACCATGCACCCC  550

seq1  AGGCTTCCAGACTCATTTGACTTGTAGACCTCAAGAGCTGTGTTTATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCCAGACTCATTTGACTTGTAGACCTCAAGAGCTGTGTTTATACA  600

seq1  AAGGGACAGCTGCCTCTTCCAACCCCTCTCTGGGAATGAGTGATCAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACAGCTGCCTCTTCCAACCCCTCTCTGGGAATGAGTGATCAGCCA  650

seq1  CACCCATCTGCTAATATCTCACTAAGACTCAGTCATCCACTCATCCGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATCTGCTAATATCTCACTAAGACTCAGTCATCCACTCATCCGGTG  700

seq1  ATTTCTGAGTGTCTGCCGGACGAGGGTTGCTGGTGAGATATCAGGAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGTGTCTGCCGGACGAGGGTTGCTGGTGAGATATCAGGAAAGG  750

seq1  AAAGCTCTGAGCCTCGTTCCTAAGAGTGATGGGGTGGACGCAGACAAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTGAGCCTCGTTCCTAAGAGTGATGGGGTGGACGCAGACAAGAC  800

seq1  CAGCGCTGGAAAGTAGTCACCATGGCAACCACATAGCTGAAACTCCTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCTGGAAAGTAGTCACCATGGCAACCACATAGCTGAAACTCCTGCA  850

seq1  CTCTTGCCATATGCCAAGAGGGCAGACATTAGAAGATGTGATTCTCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCATATGCCAAGAGGGCAGACATTAGAAGATGTGATTCTCTTCT  900

seq1  CCTCAAGTTCCGAACCCAG-AAGAATCCAGTTTACCAT-GGAAAATTCTC  948
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  CCTCAAGTTCCGAACCCAGAAAGAATCCAGTTTACCATGGGAAAATTCTC  950

seq1  AAGACACCCGCTCGTTACC-TCCCAGGGCTGACAGTAGACTGAGGAAAGA  997
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  -AGACACCCGCTCGTTACCTTCCCAGGGCTGACAGTAGACTGAGGAAAGA  999

seq1  CTAG-AGGGAATTCTCTGGAACACTGAACATATTTTCCACTT-GGGGTGT  1045
      |||| ||| | |||||||  |||||| ||||||||||||||| |||||||
seq2  CTAGAAGGTATTTCTCTG--ACACTG-ACATATTTTCCACTTGGGGGTGT  1046

seq1  TGTCTTCAGGGTGTCTGTATTTGGGAGGTCATTAGATATATGTGTCTCAC  1095
      ||||| |||| |||||||||||||  ||||||||||  ||||||||||||
seq2  TGTCTCCAGGCTGTCTGTATTTGGACGGTCATTAGAATTATGTGTCTCAC  1096

seq1  TGGATTAAAAAAAAAAAACCCTTTCTGAAAGACTTT  1131
      | || |   ||||| ||||| |||||||||||||||
seq2  TTGAAT-TCAAAAATAAACCGTTTCTGAAAGACTTT  1131

seq1: chr5_117104215_117105356
seq2: B6Ng01-199C16.g_62_1207 (reverse)

seq1  AAAGTGGAGA-TCTGAACTTGACCCTGTATCCTCCCACAACTTTGTGGTT  49
      |||||||||| |||||||||||  ||||||| |||  ||||||||||| |
seq2  AAAGTGGAGATTCTGAACTTGA--CTGTATCTTCCACCAACTTTGTGGCT  48

seq1  TAAATTAGCCTCTTTGTTCTCT----GTCACGGTTGATTCTGATTGTCAA  95
      ||| | |||||  ||| |||||     |||| ||||| ||||||||||||
seq2  TAACTAAGCCTTCTTGATCTCTTCTGTTCAC-GTTGAATCTGATTGTCAA  97

seq1  CTTGACAGAATTGAGAATCACTTAGAAGCTTGAC-TAACACAGACCTGTG  144
      |||||||||| |||| |||||||||||||||||| |||||||||||||||
seq2  CTTGACAGAAATGAG-ATCACTTAGAAGCTTGACTTAACACAGACCTGTG  146

seq1  GGTGTG-TCTA-TCATAGAGTTTCGGTGAGGGGGGCGGGCGGGGGGAGGG  192
      |||||| |||| ||||||||||   |||| |||||||||| |||||||||
seq2  GGTGTGTTCTATTCATAGAGTT--CGTGA-GGGGGCGGGC-GGGGGAGGG  192

seq1  TC-AACAGAGAAGAAAACTCACTGTGAATGTG-AGTGGCATCCTCTCATC  240
      || ||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCAAACAGAGAAGAAAACTCACTGTGAATGTGAAGTGGCATCCTCTCATC  242

seq1  AGGTTAGGACCCAGGCAACATAAAAA-GGAAGAGGAAGCAAGCACCAGCA  289
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGGTTAGGACCCAGGCAACATAAAAAGGGAAGAGGAAGCAAGCACCAGCA  292

seq1  TACTCTACTTCCCTCTGCCTCCTGCTC-ACAGAGCACAGGAGAGCAGCCC  338
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TACTCTACTTCCCTCTGCCTCCTGCTCAACAGAGCACAGGAGAGCAGCCC  342

seq1  CCATCATCCCCGCTGCCCTGCATGGGCCCGATTCCTTGAAACAATGAATC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATCCCCGCTGCCCTGCATGGGCCCGATTCCTTGAAACAATGAATC  392

seq1  AGAATAAACCCTTCCTGTCTCACACTGTCTCTGTCAAGCAGATGATCACA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAACCCTTCCTGTCTCACACTGTCTCTGTCAAGCAGATGATCACA  442

seq1  ATGACTAAGCGAGGTGGGGGCATTTAGTACATGCTCCAAAATGTTCACAT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAAGCGAGGTGGGGGCATTTAGTACATGCTCCAAAATGTTCACAT  492

seq1  TCTTCAGCCTGTGTCTGCCTACTGGAAGCTCCTCAGGAATTCTAGGAGAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGCCTGTGTCTGCCTACTGGAAGCTCCTCAGGAATTCTAGGAGAT  542

seq1  GTTGGAAACTCACTCGTGGAAGGAAACAATGTAGCCAATAAGTCTCTCTT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAACTCACTCGTGGAAGGAAACAATGTAGCCAATAAGTCTCTCTT  592

seq1  CTCATTCACCATTTTTTAGGGCTATTACTCATACTACGGCAAACTTGTCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCACCATTTTTTAGGGCTATTACTCATACTACGGCAAACTTGTCT  642

seq1  ACGCAATTCTACAACCTTGAGTGAGTCCTCATCCCTTTCCTGCCTCTAGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAATTCTACAACCTTGAGTGAGTCCTCATCCCTTTCCTGCCTCTAGA  692

seq1  TTTACTTTGCCTGCATCTGTGTCACTATGTTTGGATCCGTGCCCAGTCAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTGCCTGCATCTGTGTCACTATGTTTGGATCCGTGCCCAGTCAA  742

seq1  CTCACACACTACAGAGCCCAGATCGCTTTGGGAGCCCAAATCTGACCACT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACACTACAGAGCCCAGATCGCTTTGGGAGCCCAAATCTGACCACT  792

seq1  TATGGCTAAAAACCAAGGTAAACACCTGCAAAGAGGCATCCTGATTCTTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTAAAAACCAAGGTAAACACCTGCAAAGAGGCATCCTGATTCTTT  842

seq1  GGCTTCACCTAAAATCCTCCAAACTGTCCAGAGTTATTCACTGTTGGTGG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCACCTAAAATCCTCCAAACTGTCCAGAGTTATTCACTGTTGGTGG  892

seq1  GAGTGTAGGCTGGCGTAGCCGAGATAGAAATCAGTGTGGAGATTCCTCAC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTAGGCTGGCGTAGCCGAGATAGAAATCAGTGTGGAGATTCCTCAC  942

seq1  AAAGTTGGAATAGACCACCATGTGACTCCATGATATTCCACTCCCAGGCA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGGAATAGACCACCATGTGACTCCATGATATTCCACTCCCAGGCA  992

seq1  TATATCCAAAGGACTCTGCTTGCTAGTGTAGAGGCGCGTGCTCGTACACA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCAAAGGACTCTGCTTGCTAGTGTAGAGGCGCGTGCTCGTACACA  1042

seq1  CCCACTGCTTTTTCTAACAATAGCCAGCTCGTGGAAGCAGCGTAGGTATT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGCTTTTTCTAACAATAGCCAGCTCGTGGAAGCAGCGTAGGTATT  1092

seq1  CATCAACTGATGGGTGAATGGGGAGGGAAACGTGGAATGCGCATAATGGA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACTGATGGGTGAATGGGGAGGGAAACGTGGAATGCGCATAATGGA  1142

seq1  ATTC  1142
      ||||
seq2  ATTC  1146