BAC Information

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BAC

Clone NameB6Ng01-199E19
Chromosome5 (Build37)
Map Location 85,859,341 - 85,860,054
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199E19.bB6Ng01-199E19.g
ACCGA020666GA020667
length442714
definitionB6Ng01-199E19.b B6Ng01-199E19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
agagatacattctagcagttcttttatttttcaggactgtttaagctata
ctagaattttggtttttccatatgaagtttagaattgctcttttaagatc
tatatagaattttactggaattttgatgtggattggtttaatctgtagat
tgctcttagtaggatggctgtttttataatattaatcctaccatccatga
gcatagggtatctttccatcttttgatgtcttctttagattctttcctca
attatttgacattgctgtcttatgcatctttcacttgcttggttagagtt
cccacaagatagttcatattcttctgaggctatattgaagggtgttattt
tcctgatttctttctcaatctgtttgtcattgtatatagtatggctactg
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaat

gaattctttgcttagttctgctccccatttttaggtgggttatttccttg
atgttcaatttcgttagttctttatatatcccaggtactaatgctctatc
aaatttataattcatatacatttttcgcttttgtagacttctgttttact
caaatgatggtgctctttgccatacagaaatttgcaggttcatgagatcc
aatttattaatattattgaagaagggaaaaccagaaatcacacacacaat
tacttctctcaccagaaaataaatgtgggaaattttaacattctatttgc
tttttttttcccctctccacatccccaaatcccattttctgtaataaatg
acactttaacttaaaaactcttgtctatggaatgtatttaaaatattact
cattaacttggacacatggagtcttcagagactgaaccatcaaccaagta
acatacaggagctggccctaggacttcccacacgtatgtagcagatgtgc
agctggtcttcatctgggtcctgaataacaggaatagggtctatccttaa
agcagttgtatgttcatgagataggttcttctagctgggctgtcttgtct
atcatcagtgggagaggatgctcctagcctcacagagacttgatatgcta
gggcaagggaatatccacacaacctctggctgcccagaggagaaggggag
gggaatggtgatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_85859341_85860054
seq2: B6Ng01-199E19.g_64_777 (reverse)

seq1  ATATCACCATTCCCCTCCCCTTCTCCTCTGGGCAGCCAGAGGTTGTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACCATTCCCCTCCCCTTCTCCTCTGGGCAGCCAGAGGTTGTGTGG  50

seq1  ATATTCCCTTGCCCTAGCATATCAAGTCTCTGTGAGGCTAGGAGCATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCCTTGCCCTAGCATATCAAGTCTCTGTGAGGCTAGGAGCATCCT  100

seq1  CTCCCACTGATGATAGACAAGACAGCCCAGCTAGAAGAACCTATCTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTGATGATAGACAAGACAGCCCAGCTAGAAGAACCTATCTCATG  150

seq1  AACATACAACTGCTTTAAGGATAGACCCTATTCCTGTTATTCAGGACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACAACTGCTTTAAGGATAGACCCTATTCCTGTTATTCAGGACCCA  200

seq1  GATGAAGACCAGCTGCACATCTGCTACATACGTGTGGGAAGTCCTAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGACCAGCTGCACATCTGCTACATACGTGTGGGAAGTCCTAGGGC  250

seq1  CAGCTCCTGTATGTTACTTGGTTGATGGTTCAGTCTCTGAAGACTCCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTGTATGTTACTTGGTTGATGGTTCAGTCTCTGAAGACTCCATG  300

seq1  TGTCCAAGTTAATGAGTAATATTTTAAATACATTCCATAGACAAGAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAGTTAATGAGTAATATTTTAAATACATTCCATAGACAAGAGTTT  350

seq1  TTAAGTTAAAGTGTCATTTATTACAGAAAATGGGATTTGGGGATGTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTAAAGTGTCATTTATTACAGAAAATGGGATTTGGGGATGTGGAG  400

seq1  AGGGGAAAAAAAAAGCAAATAGAATGTTAAAATTTCCCACATTTATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAAAAAAAAGCAAATAGAATGTTAAAATTTCCCACATTTATTTTC  450

seq1  TGGTGAGAGAAGTAATTGTGTGTGTGATTTCTGGTTTTCCCTTCTTCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGAGAAGTAATTGTGTGTGTGATTTCTGGTTTTCCCTTCTTCAAT  500

seq1  AATATTAATAAATTGGATCTCATGAACCTGCAAATTTCTGTATGGCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAATAAATTGGATCTCATGAACCTGCAAATTTCTGTATGGCAAAG  550

seq1  AGCACCATCATTTGAGTAAAACAGAAGTCTACAAAAGCGAAAAATGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCATCATTTGAGTAAAACAGAAGTCTACAAAAGCGAAAAATGTATA  600

seq1  TGAATTATAAATTTGATAGAGCATTAGTACCTGGGATATATAAAGAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATAAATTTGATAGAGCATTAGTACCTGGGATATATAAAGAACTA  650

seq1  ACGAAATTGAACATCAAGGAAATAACCCACCTAAAAATGGGGAGCAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAATTGAACATCAAGGAAATAACCCACCTAAAAATGGGGAGCAGAAC  700

seq1  TAAGCAAAGAATTC  714
      ||||||||||||||
seq2  TAAGCAAAGAATTC  714


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