BAC Information

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BAC

Clone NameB6Ng01-199P04
Chromosome5 (Build37)
Map Location 28,100,534 - 28,101,683
singlet/doubletsinglet
Overlap genePaxip1
Upstream geneDpp6, B930011P16Rik, Speer4b
Downstream geneHtr5a, EG433862, LOC231069, Insig1, En2, Cnpy1, Prr8, Shh, LOC100039258
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199P04.g
ACCGA021144
length1,144
definitionB6Ng01-199P04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctagccaatcttgagtgatattcacacctgtatacctagcgctg
gggatatagatgcaggcagatctctgatttcaatgctagtgtatgtggtc
tataaaagttccaggacggccagagctatacaatgaaaaagcaaaacaaa
aagacttgaactcctttgcatacaagttttaggaggtggggatacagtat
ggatccttggtggatcaactatcttgcccaggaaaaaagtttcttgaaat
aatgaggcttaggccagccaaggtcacccaatgagatcctgtctcaagca
aagtgacaactaagcaaaggaaaatgggcagggctgagatcacaatggca
aaggccacagctaaccagcaagttggttccaactgctttgctctaaacat
ctgtacgcatcaggagagcaaacagcattgcagtgtcccagaaacagact
ccaaatgccttggttcctcacccgcccacgaacatcctcctattctgata
tgcacactagaatgctaggacctttgtttttgattttttttccctccaca
ttgctgaggatggaacctaaggcctcaagcctgtgaggcaagcactcacc
atagcctagagcagaccgtgctatatcagcatcactagcagggggtatga
atctgccatctcctgactgcccaatgttctgtgaaaactcagattccctg
taagaactgcaaatgtgcctaaccactgaaccgtctctcgtgcttccatg
taattcatgagtaagttaagtaaatacttcaagctgaaattcaaagactt
aatacttacaaacccactgtgacagccatcttgactgtcaacctgactac
acctggaatgaagtacaatgcagaaataaaaggcacacctgtgaaattaa
tttttggcttggtttgaagtgggggaatcacttggaggtagaagacaaca
tgcctttgatctggaagacacacttttatctggaagcctaatattaagga
cattgaagctttgcttttgcttgtttgtcctgccttgcctcgtgaagtca
atccttcactgttcatagagctatgtcctagcaatcagtctacttagacg
ctgagacatccagctgtgtcagagcaacgtctggataccttgga
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_28100534_28101683
seq2: B6Ng01-199P04.g_63_1206

seq1  GAATTCCTAGCCAGGTATGAGTGATATACACACCTTTAAACCTAGCGCTT  50
      |||||||||||||    |||||||||| ||||||| || |||||||||| 
seq2  GAATTCCTAGCCAATCTTGAGTGATATTCACACCTGTATACCTAGCGCTG  50

seq1  GGGAGATAGATGCAGGCAGATCTCTGAGTTCAATGCTAGTGTATGTGGTC  100
      |||| |||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGGATATAGATGCAGGCAGATCTCTGATTTCAATGCTAGTGTATGTGGTC  100

seq1  TATAAAAGTTCCAGGACAGCCAGGGCTATACAATGAAAAAGCAAAACAAA  150
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  TATAAAAGTTCCAGGACGGCCAGAGCTATACAATGAAAAAGCAAAACAAA  150

seq1  AAGACTTGAACTCCTTTGCATACAAGTTTTAGGAGGTGGGGATACAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTGAACTCCTTTGCATACAAGTTTTAGGAGGTGGGGATACAGTAT  200

seq1  GGATCCTTGGTGGATCAGTTATCTTTCACAGGAAAAAAGTTTCTTGAAAT  250
      |||||||||||||||||  |||||| | ||||||||||||||||||||||
seq2  GGATCCTTGGTGGATCAACTATCTTGCCCAGGAAAAAAGTTTCTTGAAAT  250

seq1  AATGAGGCTTAGGCCAGCCAAGGTCACACAGTGAGATCCTGTCTCAAGCA  300
      ||||||||||||||||||||||||||| || |||||||||||||||||||
seq2  AATGAGGCTTAGGCCAGCCAAGGTCACCCAATGAGATCCTGTCTCAAGCA  300

seq1  AAGTAACAACTAAGCAAAGGAAAATGGGCAGGGCTGAGATCACAATGGCA  350
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACAACTAAGCAAAGGAAAATGGGCAGGGCTGAGATCACAATGGCA  350

seq1  AAGGCCACAGCTAACCAGTAAGTTGGTTCCAACTGCTTTGCTCTAAACAT  400
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGGCCACAGCTAACCAGCAAGTTGGTTCCAACTGCTTTGCTCTAAACAT  400

seq1  ATGTACACATCAGGAGAGCAAACAGCATTGCAGTGTCCCAGAAACAGACT  450
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACGCATCAGGAGAGCAAACAGCATTGCAGTGTCCCAGAAACAGACT  450

seq1  CCAAATGCCTTGGTTCCTCACCCGCCCACGAACATCCTCCTATTCTGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGCCTTGGTTCCTCACCCGCCCACGAACATCCTCCTATTCTGATA  500

seq1  TGCACACTAGAATGCTAGGACCTTTGTTTTTGATTTTTTTTCCCTCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACTAGAATGCTAGGACCTTTGTTTTTGATTTTTTTTCCCTCCACA  550

seq1  TTGCTGAGGATGGAACCTAGGGCCTCAAGCCTGTGAGGCAAGCACTCACC  600
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTGCTGAGGATGGAACCTAAGGCCTCAAGCCTGTGAGGCAAGCACTCACC  600

seq1  ATAGCCTAGAGCAGACCGTGCTATATCAGCATCAGTAGCAGGGGGTATGA  650
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATAGCCTAGAGCAGACCGTGCTATATCAGCATCACTAGCAGGGGGTATGA  650

seq1  ATCTGCCAATCTCCTGACTGCCCAATGTTCTGTGAAAACCCAGATTCCCT  700
      ||||||| ||||||||||||||||||||||||||||||| ||||||||||
seq2  ATCTGCC-ATCTCCTGACTGCCCAATGTTCTGTGAAAACTCAGATTCCCT  699

seq1  GGAAGAACTGCAAATGTGCCTAACCACTGAACCGTCTCTCGTGCTTCCAT  750
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAACTGCAAATGTGCCTAACCACTGAACCGTCTCTCGTGCTTCCAT  749

seq1  GTAATTCATGAGTAAGTTAAGTAAATACTTCAAGCTGAAATTCAAAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCATGAGTAAGTTAAGTAAATACTTCAAGCTGAAATTCAAAGACT  799

seq1  TAATACTTACAAACCCACTGTGACAGCCATCTTGACTGTCAACCTGACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTTACAAACCCACTGTGACAGCCATCTTGACTGTCAACCTGACTA  849

seq1  CACCTGGAATGAAGTACAATGCAGAAATAAAAGGCACACCTGTGAAATT-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CACCTGGAATGAAGTACAATGCAGAAATAAAAGGCACACCTGTGAAATTA  899

seq1  ATTTTTGGCTTGGTTTGAAGTGGGGGAATCCACTT-GAGGTAGAAGACAA  948
      ||||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  ATTTTTGGCTTGGTTTGAAGTGGGGGAAT-CACTTGGAGGTAGAAGACAA  948

seq1  CATGCCTTTGATCTGGAAGACACACTTTTAATCTGGAAGCCT-ATA-TAA  996
      ||||||||||||||||||||||||||||| |||||||||||| ||| |||
seq2  CATGCCTTTGATCTGGAAGACACACTTTT-ATCTGGAAGCCTAATATTAA  997

seq1  GGACATTGAAGCTTTTGCTTTTTGCTTGTTTGTCCTGCCTTG-CTCGTGA  1045
      |||||||||||| ||||| ||||||||||||||||||||||| |||||||
seq2  GGACATTGAAGC-TTTGC-TTTTGCTTGTTTGTCCTGCCTTGCCTCGTGA  1045

seq1  GGTCATTCCTTCACTGTCATTAGAGCCTATGTCTTTGGAATCAGTCTACT  1095
       |||| |||||||||||   ||||| ||||||| | | ||||||||||||
seq2  AGTCAATCCTTCACTGTTCATAGAG-CTATGTCCTAGCAATCAGTCTACT  1094

seq1  AAAGACCAGCTGAGACATCCAGCCTTGTGGTCAGAGCAACTTCTGGATA-  1144
        ||||  |||||||||||||||  ||| ||||||||||| |||||||| 
seq2  -TAGAC--GCTGAGACATCCAGC--TGT-GTCAGAGCAACGTCTGGATAC  1138

seq1  CTTGGA  1150
      ||||||
seq2  CTTGGA  1144