BAC Information

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BAC

Clone NameB6Ng01-200A18
Chromosome5 (Build37)
Map Location 138,159,870 - 138,160,788
singlet/doubletsinglet
Overlap genenone
Upstream geneMylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl
Downstream geneLOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200A18.bB6Ng01-200A18.g
ACCGA021217GA021218
length744932
definitionB6Ng01-200A18.b B6Ng01-200A18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttttcttgagtcactcttttgttttcgtggagcggagccttca
gaaatcacctttgatcacaggaagtatttcttctgagatgctgaattgat
aatttatctaggtatcatactctaggttgcaaaacatttttcttgagatc
ttgtaagctttccttcctttgccctacattgccctaaaatctctatcgat
gttcaatattaattaatgctgatattgagaagtcttagaagccccaattt
gtttaacctggggtttttttttccccacggggagggggttatttttagaa
ccctttttccactttccaaattttccttaaaagtgggttttttaaaaaaa
ccccttccttcccccaatggggtttttttggtttaccaattggaaagaaa
ccggttttttggggccaccaatttttttcccaatttttaaaaattttaat
tttttccttgggggaaaaaaccccttttttggcccctttttttaaaattt
taaaagtggaaaaaaaaaaaaaattttaccaattcaatttttttcccttt
aacccctaatggtggtaatcctggggggttttccttgggttccccctggg
tcctgggtgaaaagggggttttttttttcctttaaattttttccctggcc
aattgggtggtgggggggtccctggggggttttccttaaattttttctgg
gggggggggggtccctgggttttccctttaatttttttcctcgg
gaattctgcatgaacttggttgcttcctccaaacgcctcttacagctcac
aggaagtgggaactagaggatcccggcacttcctattcaggctttggctt
ctgttgtgtgtgcaacagcagagtgatagttgaccctgagtgtccagcat
ccatgtctctgtctcctccatgacggtgctcagcatgctgtctgggctca
tccagcccacactttgtcctctgtcaccaccccagggcaatctctggtta
ctaaaaatggctgacatccagaacccacagatcggaagttccagagatgg
cattgctaccatatcaaaaactttccgctgaccagatggtgaccttttct
gattgtgtttggcattccttccttaaagctcagggatgggtgggacaggg
acatgtacacagtccagaaacttcggtcacgagggggaaacctggaaaag
ttagaatcagagggaaagttttaaatatgtgcgttatttaccgcagggcc
ccttcctatctgaatttactcggctcatctagcaacttaaaagatatctc
tgcattcgggtcataaactgtcatggttgatacccttagacacataacag
caaaaagataatgaaaaaacactccctcttccccatctctgcatttcaag
gttgggctgaaaagagtacaaagacctggaagaaaaacctaccatctcct
cccagtttcgttttgtttcattttgagacagattctcgtctatgcagaca
gatttccaactcactatgtagcccaggatgatctgaactcatgacccttc
ttctttcaactttcccaggttctgggaattacaagtgtttaccatcggga
tcccagcttccttctcttattaactcccttcccacgtgctgggatccttc
aggattgtgcaccatcacattcttagatctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138159870_138160788
seq2: B6Ng01-200A18.g_67_998 (reverse)

seq1  AGAGATCTAAG-ATGTGATGGTGCACA--TCTGA--GATCCCAGCACGTG  45
      ||||||||||| |||||||||||||||   ||||  ||||||||||||||
seq2  AGAGATCTAAGAATGTGATGGTGCACAATCCTGAAGGATCCCAGCACGTG  50

seq1  GG-AGGGAGTTTATAAGAGAAGGAAGCT-GGAT-CCGATGGTAAACACTT  92
      || |||||||| |||||||||||||||| |||| ||||||||||||||||
seq2  GGAAGGGAGTTAATAAGAGAAGGAAGCTGGGATCCCGATGGTAAACACTT  100

seq1  GTAATT-CCAGAACCTGGG-AAGTTG-AAGAAGAAGGGTCATGAGTTCAG  139
      |||||| |||||||||||| |||||| |||||||||||||||||||||||
seq2  GTAATTCCCAGAACCTGGGAAAGTTGAAAGAAGAAGGGTCATGAGTTCAG  150

seq1  ATCATCCTGGGCTACATAGTGAGTTGGAAATCTGTCTGCATAGACGAGAA  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCTGGGCTACATAGTGAGTTGGAAATCTGTCTGCATAGACGAGAA  200

seq1  TCTGTCTCAAAATGAAACAAAACGAAACTGGGAGGAGATGGTAGGTTTTT  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCAAAATGAAACAAAACGAAACTGGGAGGAGATGGTAGGTTTTT  250

seq1  CTTCCAGGTCTTTGTACTC-TTTCAGCCCAACCTTGAAATGCAGAGATGG  288
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTCCAGGTCTTTGTACTCTTTTCAGCCCAACCTTGAAATGCAGAGATGG  300

seq1  GGAAGAGGGAGTG-TTTTTCATTATCTTTTTGCTGTTATGTGTCTAAGGG  337
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGGAGTGTTTTTTCATTATCTTTTTGCTGTTATGTGTCTAAGGG  350

seq1  TATCAACCATGACAGTTTATGACCCGAATGCAGAGATATCTTTTAAGTTG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACCATGACAGTTTATGACCCGAATGCAGAGATATCTTTTAAGTTG  400

seq1  CTAGATGAGCCGAGTAAATTCAGATAGGAAGGGGCCCTGCGGTAAATAAC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGAGCCGAGTAAATTCAGATAGGAAGGGGCCCTGCGGTAAATAAC  450

seq1  GCACATATTTAAAACTTTCCCTCTGATTCTAACTTTTCCAGGTTTCCCCC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATATTTAAAACTTTCCCTCTGATTCTAACTTTTCCAGGTTTCCCCC  500

seq1  TCGTGACCGAAGTTTCTGGACTGTGTACATGTCCCTGTCCCACCCATCCC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGACCGAAGTTTCTGGACTGTGTACATGTCCCTGTCCCACCCATCCC  550

seq1  TGAGCTTTAAGGAAGGAATGCCAAACACAATCAGAAAAGGTCACCATCTG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTTAAGGAAGGAATGCCAAACACAATCAGAAAAGGTCACCATCTG  600

seq1  GTCAGCGGAAAGTTTTTGATATGGTAGCAATGCCATCTCTGGAACTTCCG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCGGAAAGTTTTTGATATGGTAGCAATGCCATCTCTGGAACTTCCG  650

seq1  ATCTGTGGGTTCTGGATGTCAGCCATTTTTAGTAACCAGAGATTGCCCTG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGGGTTCTGGATGTCAGCCATTTTTAGTAACCAGAGATTGCCCTG  700

seq1  GGGTGGTGACAGAGGACAAAGTGTGGGCTGGATGAGCCCAGACAGCATGC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTGACAGAGGACAAAGTGTGGGCTGGATGAGCCCAGACAGCATGC  750

seq1  TGAGCACCGTCATGGAGGAGACAGAGACATGGATGCTGGACACTCAGGGT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACCGTCATGGAGGAGACAGAGACATGGATGCTGGACACTCAGGGT  800

seq1  CAACTATCACTCTGCTGTTGCACACACAACAGAAGCCAAAGCCTGAATAG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATCACTCTGCTGTTGCACACACAACAGAAGCCAAAGCCTGAATAG  850

seq1  GAAGTGCCGGGATCCTCTAGTTCCCACTTCCTGTGAGCTGTAAGAGGCGT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCCGGGATCCTCTAGTTCCCACTTCCTGTGAGCTGTAAGAGGCGT  900

seq1  TTGGAGGAAGCAACCAAGTTCATGCAGAATTC  919
      ||||||||||||||||||||||||||||||||
seq2  TTGGAGGAAGCAACCAAGTTCATGCAGAATTC  932