BAC Information

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BAC

Clone NameB6Ng01-200L05
Chromosome5 (Build37)
Map Location 18,904,527 - 19,058,366
singlet/doubletdoublet
Overlap geneMagi2
Upstream geneLOC668167, 4921504A21Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200L05.bB6Ng01-200L05.g
ACCGA021690GA021691
length1,0671,126
definitionB6Ng01-200L05.b B6Ng01-200L05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,904,527 - 18,905,591)(19,057,255 - 19,058,366)
sequence
gaattcctttaacacaaggtaagcgatgcagaagaatgcacatatttaat
aaattactaattacttttcaatataaggatttggaaacagggcgatggtt
ctcataggcctttttgtgattttgcccagctaaagatgatcatggtttta
agaagccaagaaagaaactaattcataagttttagcaagctttttcccaa
tttgacagtgagtaggattcttgcaattccttcttagtcttagagaatca
gaaatgagtaactgggtccatattaattcgtggaggttttcaaccgtaca
taatattctcatgtatagttagagcattgaaatgaagggtaacaggtgag
ttagcagtcacaggagggcaggcagaaggcctgaagataaccaaatcaac
tatcatccaggtccagatataaaacgttgagtctgctccaatatcttctc
catccttgagctgctagcacgtgtttcatgctggagccagtcctacagaa
ccagcgtcacgggatcgccgcgactctgagcaacagcgggatatccgaga
ggattctcagcaattgttcagtattcttagtgtcttagaaaccttgaacc
acactgtcctagagaaacgaaaggatttctgagatgaagagtggttcatt
gaccagactgaacctctttgaaaaatctccatggctcatacttcccccga
acccatgcgaataagatggagaccttgtggttggtcatggtccttgctgt
tgctagaaaccatgcagaagcccgggatccacgctcctactaactgtaag
gggcaaggaagctacttttgcagtggtaccaatgactgcagatgcagctg
aagaaagaaggatagaaaataagcactactgctgctggagcttgctccag
aatcccggagaaactattttgcccgatgactgaaaggagacgtaacccat
tcctagctctggaagtttcagtgggcgaaggaaacggatctcgttagggc
actgccttctctgttttctgctgacttcattcggattgctttgtatatgt
gtgtgggtttggtttgg

gaattccatagtttaaaagcatcagggaaaggggggcatttaaaaaataa
ttctgactaaatacattttacttattcccacaaattcattttcagcttac
tttgtatccccacaagcctcccatacccttggtggctttcttaaaactat
caaggccgtcattctgttagagttctgcaggtgaggatattggggtgctt
cagcctgggagctaaatggtgcctcctttcaatccacttgcaccacccga
gcaggtaatagaagaggctcctgcacctcacagcctgttcgtgacagaaa
atgtcagtaaaacttttgatgtccacccagggctaagatggacattttag
cactgacttcaaacctacaggtgagccttcccaggcttcctctcgcctaa
agagagcaaatatgcataacattcttactttattcaccctttccagcatt
aaggatcatacatccaggaaatctgggatattatgtaaagaccaaatcta
agaatactaggatagaagaagagaaaaaacccacacgttctttacattcc
attactttatctaattacctctctgcctctctgcaaaaagtaaattttat
atgccccatcctagactcttaaaaatcaagggaccaagggacaaagcaaa
agaggccaggccagtacttgaggactttaggggaaggggtcagagtggat
cacaggcatgcctaggtagaggttggtccagtgcatagctgaatctcaca
gcttgaattcaaaggagctgggatcaagtgccagtcaactggccttagct
acaaagcactggctccctgtctgttacccaaaaatgataaaaatttccca
accccagtgccactgtgacagaacggattgaggctttcagggttgcaaga
gcaggttggctttgcttgggttttgctgttaaagcaacacttccctgcag
aaggtgaaactctcagtaggccctttcaacactaactcccaacacatggt
tgatctgaatgttacggttttcatactttctgtagtagcacctccaccag
tgaacacaggaaggcttcaatggagtgtgagctgaggtgtgggttacttg
gctatggcactgacaggtctggtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18904527_18905591
seq2: B6Ng01-200L05.b_47_1113

seq1  GAATTCCTTTAACACAAGGTAAGCGATGCAGAAGAATGCACATATTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAACACAAGGTAAGCGATGCAGAAGAATGCACATATTTAAT  50

seq1  AAATTACTAATTACTTTTCAATATAAGGATTTGGAAACAGGGCGATGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTAATTACTTTTCAATATAAGGATTTGGAAACAGGGCGATGGTT  100

seq1  CTCATAGGCCTTTTTGTGATTTTGCCCAGCTAAAGATGATCATGGTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGGCCTTTTTGTGATTTTGCCCAGCTAAAGATGATCATGGTTTTA  150

seq1  AGAAGCCAAGAAAGAAACTAATTCATAAGTTTTAGCAAGCTTTTTCCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCAAGAAAGAAACTAATTCATAAGTTTTAGCAAGCTTTTTCCCAA  200

seq1  TTTGACAGTGAGTAGGATTCTTGCAATTCCTTCTTAGTCTTAGAGAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAGTGAGTAGGATTCTTGCAATTCCTTCTTAGTCTTAGAGAATCA  250

seq1  GAAATGAGTAACTGGGTCCATATTAATTCGTGGAGGTTTTCAACCGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGTAACTGGGTCCATATTAATTCGTGGAGGTTTTCAACCGTACA  300

seq1  TAATATTCTCATGTATAGTTAGAGCATTGAAATGAAGGGTAACAGGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTCTCATGTATAGTTAGAGCATTGAAATGAAGGGTAACAGGTGAG  350

seq1  TTAGCAGTCACAGGAGGGCAGGCAGAAGGCCTGAAGATAACCAAATCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGTCACAGGAGGGCAGGCAGAAGGCCTGAAGATAACCAAATCAAC  400

seq1  TATCATCCAGGTCCAGATATAAAACGTTGAGTCTGCTCCAATATCTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCCAGGTCCAGATATAAAACGTTGAGTCTGCTCCAATATCTTCTC  450

seq1  CATCCTTGAGCTGCTAGCACGTGTTTCATGCTGGAGCCAGTCCTACAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTGAGCTGCTAGCACGTGTTTCATGCTGGAGCCAGTCCTACAGAA  500

seq1  CCAGCGTCACGGGATCGCCGCGACTCTGAGCAACAGCGGGATATCCGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGTCACGGGATCGCCGCGACTCTGAGCAACAGCGGGATATCCGAGA  550

seq1  GGATTCTCAGCAATTGTTCAGTATTCTTAGTGTCTTAGAAACCTTGAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTCAGCAATTGTTCAGTATTCTTAGTGTCTTAGAAACCTTGAACC  600

seq1  ACACTGTCCTAGAGAAACGAAAGGATTTCTGAGATGAAGAGTGGTTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTCCTAGAGAAACGAAAGGATTTCTGAGATGAAGAGTGGTTCATT  650

seq1  GACCAGACTGAACCTCTTTGAAAAATCTCCATGGCTCATACTTCCCCCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGACTGAACCTCTTTGAAAAATCTCCATGGCTCATACTTCCCCCGA  700

seq1  ACCCATGCGAATAAGATGGAGACCTTGTGGTTGGTCATGGTCCTTGCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGCGAATAAGATGGAGACCTTGTGGTTGGTCATGGTCCTTGCTGT  750

seq1  TGCTAGAAACCATGCAGAAGCCCGGGATCCACGCTCCTACTAACTGTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAAACCATGCAGAAGCCCGGGATCCACGCTCCTACTAACTGTAAG  800

seq1  GGGCAAGGAAGCTACTTTTGCAGTGGTACCAATGACTGCAGATGCAGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGGAAGCTACTTTTGCAGTGGTACCAATGACTGCAGATGCAGCTG  850

seq1  AAGAAAGAAGGATAGAAAATAAGCACTACTGCTGCTGGAGCTTGCTCCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAGGATAGAAAATAAGCACTACTGCTGCTGGAGCTTGCTCCAG  900

seq1  AAT-CCGGAGAAACTATTTTGCCCGATGACTG-AAGGAGACGTAACCCAT  948
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  AATCCCGGAGAAACTATTTTGCCCGATGACTGAAAGGAGACGTAACCCAT  950

seq1  TCCTAGCTCTGGAGGTTTCAGTGGGCG-AGGAAACGGATCTCGTTAGGGC  997
      ||||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  TCCTAGCTCTGGAAGTTTCAGTGGGCGAAGGAAACGGATCTCGTTAGGGC  1000

seq1  ACTGCCTCCTCTGTTTTCTGCTGACTCCATTCGGATTGCTTTGTATATGT  1047
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  ACTGCCTTCTCTGTTTTCTGCTGACTTCATTCGGATTGCTTTGTATATGT  1050

seq1  GTTGTTGGGTTTGTTTGG  1065
      | ||| || || ||||||
seq2  G-TGTGGGTTTGGTTTGG  1067


seq1: chr5_19057255_19058366
seq2: B6Ng01-200L05.g_67_1192 (reverse)

seq1  GAGACCAGA-CTGTCCGTG-CATAGCCCAGTACCCCACACCTCAGCTCAC  48
      ||||||||| ||||| ||| ||||||| |||| |||||||||||||||| 
seq2  GAGACCAGACCTGTCAGTGCCATAGCCAAGTAACCCACACCTCAGCTCA-  49

seq1  CACT-CACTGAAGCCCTTTCCTGTGTTCACTGGTG--AGTGCTACTACAG  95
      |||| || |||||||  ||||||||||||||||||   ||||||||||||
seq2  CACTCCATTGAAGCC--TTCCTGTGTTCACTGGTGGAGGTGCTACTACAG  97

seq1  AAAGTATGAAAA-CGT-ACATTCAGATC-ACCATGTG-TGGGAGTTAGTG  141
      |||||||||||| ||| ||||||||||| |||||||| ||||||||||||
seq2  AAAGTATGAAAACCGTAACATTCAGATCAACCATGTGTTGGGAGTTAGTG  147

seq1  TTGGAAGGG-CTACTGAGAG-TTCACCTTCTGCA-GGAAGTGTTGCTTT-  187
      ||| ||||| |||||||||| ||||||||||||| |||||||||||||| 
seq2  TTGAAAGGGCCTACTGAGAGTTTCACCTTCTGCAGGGAAGTGTTGCTTTA  197

seq1  ACAGC-AAACCCAAGC-AAGCCAACCTGCTCTTGC-ACCCTGAAAGCCTC  234
      ||||| |||||||||| |||||||||||||||||| ||||||||||||||
seq2  ACAGCAAAACCCAAGCAAAGCCAACCTGCTCTTGCAACCCTGAAAGCCTC  247

seq1  AATCCGTTCTGTCACAGTGGCACTGGGGTTGGG-AATTTTTATCATTTTT  283
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATCCGTTCTGTCACAGTGGCACTGGGGTTGGGAAATTTTTATCATTTTT  297

seq1  GGGTAACAGACAGGGAGCCAGTGCTTTGTAGCTAAGGCCAGTTGACTGGC  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAACAGACAGGGAGCCAGTGCTTTGTAGCTAAGGCCAGTTGACTGGC  347

seq1  ACTTGATCCCAGCTCCTTTGAATTCAAGCTGTGAGATTCAGCTATGCACT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATCCCAGCTCCTTTGAATTCAAGCTGTGAGATTCAGCTATGCACT  397

seq1  GGACCAACCTCTACCTAGGCATGCCTGTGATCCACTCTGACCCCTTCCCC  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAACCTCTACCTAGGCATGCCTGTGATCCACTCTGACCCCTTCCCC  447

seq1  TAAAGTCCTCAAGTACTGGCCTGGCCTCTTTTGCTTTGTCCCTTGGTCCC  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCCTCAAGTACTGGCCTGGCCTCTTTTGCTTTGTCCCTTGGTCCC  497

seq1  TTGATTTTTAAGAGTCTAGGATGGGGCATATAAAATTTACTTTTTGCAGA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTTAAGAGTCTAGGATGGGGCATATAAAATTTACTTTTTGCAGA  547

seq1  GAGGCAGAGAGGTAATTAGATAAAGTAATGGAATGTAAAGAACGTGTGGG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGAGGTAATTAGATAAAGTAATGGAATGTAAAGAACGTGTGGG  597

seq1  TTTTTTCTCTTCTTCTATCCTAGTATTCTTAGATTTGGTCTTTACATAAT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCTTCTTCTATCCTAGTATTCTTAGATTTGGTCTTTACATAAT  647

seq1  ATCCCAGATTTCCTGGATGTATGATCCTTAATGCTGGAAAGGGTGAATAA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGATTTCCTGGATGTATGATCCTTAATGCTGGAAAGGGTGAATAA  697

seq1  AGTAAGAATGTTATGCATATTTGCTCTCTTTAGGCGAGAGGAAGCCTGGG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAATGTTATGCATATTTGCTCTCTTTAGGCGAGAGGAAGCCTGGG  747

seq1  AAGGCTCACCTGTAGGTTTGAAGTCAGTGCTAAAATGTCCATCTTAGCCC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCACCTGTAGGTTTGAAGTCAGTGCTAAAATGTCCATCTTAGCCC  797

seq1  TGGGTGGACATCAAAAGTTTTACTGACATTTTCTGTCACGAACAGGCTGT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGACATCAAAAGTTTTACTGACATTTTCTGTCACGAACAGGCTGT  847

seq1  GAGGTGCAGGAGCCTCTTCTATTACCTGCTCGGGTGGTGCAAGTGGATTG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCAGGAGCCTCTTCTATTACCTGCTCGGGTGGTGCAAGTGGATTG  897

seq1  AAAGGAGGCACCATTTAGCTCCCAGGCTGAAGCACCCCAATATCCTCACC  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGGCACCATTTAGCTCCCAGGCTGAAGCACCCCAATATCCTCACC  947

seq1  TGCAGAACTCTAACAGAATGACGGCCTTGATAGTTTTAAGAAAGCCACCA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAACTCTAACAGAATGACGGCCTTGATAGTTTTAAGAAAGCCACCA  997

seq1  AGGGTATGGGAGGCTTGTGGGGATACAAAGTAAGCTGAAAATGAATTTGT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATGGGAGGCTTGTGGGGATACAAAGTAAGCTGAAAATGAATTTGT  1047

seq1  GGGAATAAGTAAAATGTATTTAGTCAGAATTATTTTTTAAATGCCCCCCT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATAAGTAAAATGTATTTAGTCAGAATTATTTTTTAAATGCCCCCCT  1097

seq1  TTCCCTGATGCTTTTAAACTATGGAATTC  1112
      |||||||||||||||||||||||||||||
seq2  TTCCCTGATGCTTTTAAACTATGGAATTC  1126


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