BAC Information

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BAC

Clone NameB6Ng01-200P18
Chromosome5 (Build37)
Map Location 115,114,976 - 115,262,486
singlet/doubletdoublet
Overlap geneGltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik
Upstream geneLOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4
Downstream gene2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200P18.bB6Ng01-200P18.g
ACCGA021885GA021886
length8941,024
definitionB6Ng01-200P18.b B6Ng01-200P18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,114,976 - 115,115,868)(115,261,475 - 115,262,486)
sequence
gaattctccctggggcagaaacctgaggccaggtggggtggaagcccgtc
tcctcaaatgaccgttaccatgggcacagccatttgcagggcttagccgc
tgggtgtgatgccattcctctgggcagctggcctggcagcctgcgggtgt
ggcccagccgcagctggccaggggacacttcagagatggcgcagggaggg
actttaggggttcttaactggggtcccgggttggctgctggtgtggatgt
aggtttgtgagatgtgaatgagcctgtctcaagcaagggctagggcggtt
gtcggggacgaggtctcgggtatcctgctttgaattggctgtgtggctga
ggaagaccttgaacttctgatcctcctgcttccttccgccccccccccca
agtctgggataataggtgtgtgccagccaccgcatccagacattgggatg
ctggggctttgcctgccaggagagcactctagtgaccgagctatagtccc
aggacttggaagacaccccacccccacccaccaggtcagaccacaaaggc
aggcgatgctggtgccagtgttgatgccaatcaggaggagccaggtgcta
ggactatcaacgcttctccagagtccatgaccagggcctccttgagcacc
tggcgaacagctgcttatagtgtcaacgttgtcactgtcttctcactaaa
acagttctctgttctgggaatagaagccaagcccctctagtaaactcagc
acctatggagacatctttccctaagacggccaggctctgcctacatgggc
ctctctctctctgtccctagcacataccaactctacccaagtgttagact
tgcccgtcgtgtaagagcattaagacgtggtattttgtccctcg
gaattcttttgggcctcgcagagggctaatgagaaaagtaggcctttcaa
ccctgttctggagaaaaggaaaatgaagcccagaggtagagttgtgttac
tcaggggtactccggtaggaagtggtggatgtcagtacttgaatccgggg
tttgtgggggcttgaaggaacttcagggcggtgtctattacacacacgca
cacacacacaagcgagtgcagggcggtggttctcacggatttccctttgg
agctgggcttatcacccttgacactccccacatctttgatcaagtgattc
tttcttgggagggaaggcaggggccacagtctcttttaccctctagatgc
agacttgcctgccaccctgagtgctgcctcttttgatcagaagtgaagtt
ttgaaggtaatctatagttaagcttaaaggaatccttttaagggggtttc
tgcttgccccagcttatcggtgcagaatggggctcagtgaccatagggtg
ggctaaaattgtcttttaagtttctctttggaaccaccagtccagtcagt
tactggatatgccatgcaggagagggtgatataaggatgaagaatagagg
gacttattgggctccgggcagatattaatccaaatgatattatggaccta
acacttggtcttaagcttttctcttcctttattttttagatttttaggat
gtgcgtccttgtgtgtgtttgtccagagaggctggtaatgggtatcaggt
ttcctggagcttgtgttaacttccagtatggatcctggtcttcttggtct
taccctgcgccaaatagcccaggccaactactaagtgcctggtcaagttg
acaaaagcctcgaattccccagtttcctaaagttatgactaccagctgga
ctttaattcctctttgctccatttaaaccatttcctaatgtttaaggaag
gaggcttttaagagtcaatactttcagacaggattctggagacttgggaa
gggaactctgcttttcttaaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_115114976_115115868
seq2: B6Ng01-200P18.b_46_939

seq1  GAATTCTCCCTGGGGCAGAAACCTGAGGCCAGGTGGGGTGGAAGCCCGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTGGGGCAGAAACCTGAGGCCAGGTGGGGTGGAAGCCCGTC  50

seq1  TCCTCAAATGACCGTTACCATGGGCACAGCCATTTGCAGGGCTTAGCCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAATGACCGTTACCATGGGCACAGCCATTTGCAGGGCTTAGCCGC  100

seq1  TGGGTGTGATGCCATTCCTCTGGGCAGCTGGCCTGGCAGCCTGCGGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTGATGCCATTCCTCTGGGCAGCTGGCCTGGCAGCCTGCGGGTGT  150

seq1  GGCCCAGCCGCAGCTGGCCAGGGGACACTTCAGAGATGGCGCAGGGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGCCGCAGCTGGCCAGGGGACACTTCAGAGATGGCGCAGGGAGGG  200

seq1  ACTTTAGGGGTTCTTAACTGGGGTCCCGGGTTGGCTGCTGGTGTGGATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGGGGTTCTTAACTGGGGTCCCGGGTTGGCTGCTGGTGTGGATGT  250

seq1  AGGTTTGTGAGATGTGAATGAGCCTGTCTCAAGCAAGGGCTAGGGCGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGTGAGATGTGAATGAGCCTGTCTCAAGCAAGGGCTAGGGCGGTT  300

seq1  GTCGGGGACGAGGTCTCGGGTATCCTGCTTTGAATTGGCTGTGTGGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGGGACGAGGTCTCGGGTATCCTGCTTTGAATTGGCTGTGTGGCTGA  350

seq1  GGAAGACCTTGAACTTCTGATCCTCCTGCTTCCTTCCGCCCCCCCCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACCTTGAACTTCTGATCCTCCTGCTTCCTTCCGCCCCCCCCCCCA  400

seq1  AGTCTGGGATAATAGGTGTGTGCCAGCCACCGCATCCAGACATTGGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGGATAATAGGTGTGTGCCAGCCACCGCATCCAGACATTGGGATG  450

seq1  CTGGGGCTTTGCCTGCCAGGAGAGCACTCTAGTGACCGAGCTATAGTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCTTTGCCTGCCAGGAGAGCACTCTAGTGACCGAGCTATAGTCCC  500

seq1  AGGACTTGGAAGACACCCCACCCCCACCCACCAGGTCAGACCACAAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTGGAAGACACCCCACCCCCACCCACCAGGTCAGACCACAAAGGC  550

seq1  AGGCGATGCTGGTGCCAGTGTTGATGCCAATCAGGAGGAGCCAGGTGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGATGCTGGTGCCAGTGTTGATGCCAATCAGGAGGAGCCAGGTGCTA  600

seq1  GGACTATCAACGCTTCTCCAGAGTCCATGACCAGGGCCTCCTTGAGCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTATCAACGCTTCTCCAGAGTCCATGACCAGGGCCTCCTTGAGCACC  650

seq1  TGGCGAACAGCTGCTTATAGTGTCAACGTTGTCACTGTCTTCTCACTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGAACAGCTGCTTATAGTGTCAACGTTGTCACTGTCTTCTCACTAAA  700

seq1  ACAGTTCTCTGTTCTTGGAATAGAAGCCAAGCCCCTCTAGTAAACTCAGC  750
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACAGTTCTCTGTTCTGGGAATAGAAGCCAAGCCCCTCTAGTAAACTCAGC  750

seq1  ACCTATGGGAGACATC-TTCCCT-AGACGGCCAGGCTCTGCCTACATGGG  798
      |||||| ||||||||| |||||| ||||||||||||||||||||||||||
seq2  ACCTAT-GGAGACATCTTTCCCTAAGACGGCCAGGCTCTGCCTACATGGG  799

seq1  CCTCTCTCTCTCTGTCCCTAGCACATACCAACTCATACCCAAGTGGTAGA  848
      |||||||||||||||||||||||||||||||||| |||||||||| ||| 
seq2  CCTCTCTCTCTCTGTCCCTAGCACATACCAACTC-TACCCAAGTGTTAG-  847

seq1  ACTTGCCCGTCGTGTAAGAGCATT-AGACGTGGTA-TTTGTCCCTCG  893
      |||||||||||||||||||||||| |||||||||| |||||||||||
seq2  ACTTGCCCGTCGTGTAAGAGCATTAAGACGTGGTATTTTGTCCCTCG  894

seq1: chr5_115261475_115262486
seq2: B6Ng01-200P18.g_67_1090 (reverse)

seq1  TTGTTTTAG-AAAGCAGAGTTCCCTTCC--AGTCT-CAGAAT-CTGTCTT  45
      |||||| || ||||||||||||||||||  ||||| |||||| ||||| |
seq2  TTGTTTAAGAAAAGCAGAGTTCCCTTCCCAAGTCTCCAGAATCCTGTC-T  49

seq1  GAAAGTTTTGACTCTTTAAAGCCT-CTTCC-TAAACATAAGGAAATGGTT  93
      |||||| ||||||||| ||||||| ||||| ||||||| |||||||||||
seq2  GAAAGTATTGACTCTTAAAAGCCTCCTTCCTTAAACATTAGGAAATGGTT  99

seq1  TAAATGGAGC-AAGAGG-ATTTAAGTCCAGCT-GTAGTCATAACTTTAGG  140
      |||||||||| |||||| ||| |||||||||| |||||||||||||||||
seq2  TAAATGGAGCAAAGAGGAATTAAAGTCCAGCTGGTAGTCATAACTTTAGG  149

seq1  AAACT-GGGAATTCGAGGCTTTTGTCAACTTGACCAGGCACTTAGTAGTT  189
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGGGAATTCGAGGCTTTTGTCAACTTGACCAGGCACTTAGTAGTT  199

seq1  GGCCTGGGCTATTTGGCGCA-GGTAAGACCAAGAAGACCAGGATCCATAC  238
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGCCTGGGCTATTTGGCGCAGGGTAAGACCAAGAAGACCAGGATCCATAC  249

seq1  TGG-AGTTAACACAAGCTCCAGGAAACCTGATACCCATTACCAGCCTCTC  287
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTAACACAAGCTCCAGGAAACCTGATACCCATTACCAGCCTCTC  299

seq1  TGGACAAACACACACAAGGACGCACATCCTAAAAATCTAAAAAATAAAGG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAACACACACAAGGACGCACATCCTAAAAATCTAAAAAATAAAGG  349

seq1  AAGAGAAAAGCTTAAGACCAAGTGTTAGGTCCATAATATCATTTGGATTA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAAGCTTAAGACCAAGTGTTAGGTCCATAATATCATTTGGATTA  399

seq1  ATATCTGCCCGGAGCCCAATAAGTCCCTCTATTCTTCATCCTTATATCAC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGCCCGGAGCCCAATAAGTCCCTCTATTCTTCATCCTTATATCAC  449

seq1  CCTCTCCTGCATGGCATATCCAGTAACTGACTGGACTGGTGGTTCCAAAG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTGCATGGCATATCCAGTAACTGACTGGACTGGTGGTTCCAAAG  499

seq1  AGAAACTTAAAAGACAATTTTAGCCCACCCTATGGTCACTGAGCCCCATT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTAAAAGACAATTTTAGCCCACCCTATGGTCACTGAGCCCCATT  549

seq1  CTGCACCGATAAGCTGGGGCAAGCAGAAACCCCCTTAAAAGGATTCCTTT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCGATAAGCTGGGGCAAGCAGAAACCCCCTTAAAAGGATTCCTTT  599

seq1  AAGCTTAACTATAGATTACCTTCAAAACTTCACTTCTGATCAAAAGAGGC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTAACTATAGATTACCTTCAAAACTTCACTTCTGATCAAAAGAGGC  649

seq1  AGCACTCAGGGTGGCAGGCAAGTCTGCATCTAGAGGGTAAAAGAGACTGT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCAGGGTGGCAGGCAAGTCTGCATCTAGAGGGTAAAAGAGACTGT  699

seq1  GGCCCCTGCCTTCCCTCCCAAGAAAGAATCACTTGATCAAAGATGTGGGG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTGCCTTCCCTCCCAAGAAAGAATCACTTGATCAAAGATGTGGGG  749

seq1  AGTGTCAAGGGTGATAAGCCCAGCTCCAAAGGGAAATCCGTGAGAACCAC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAAGGGTGATAAGCCCAGCTCCAAAGGGAAATCCGTGAGAACCAC  799

seq1  CGCCCTGCACTCGCTTGTGTGTGTGTGCGTGTGTGTAATAGACACCGCCC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCTGCACTCGCTTGTGTGTGTGTGCGTGTGTGTAATAGACACCGCCC  849

seq1  TGAAGTTCCTTCAAGCCCCCACAAACCCCGGATTCAAGTACTGACATCCA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTCCTTCAAGCCCCCACAAACCCCGGATTCAAGTACTGACATCCA  899

seq1  CCACTTCCTACCGGAGTACCCCTGAGTAACACAACTCTACCTCTGGGCTT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCCTACCGGAGTACCCCTGAGTAACACAACTCTACCTCTGGGCTT  949

seq1  CATTTTCCTTTTCTCCAGAACAGGGTTGAAAGGCCTACTTTTCTCATTAG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCTTTTCTCCAGAACAGGGTTGAAAGGCCTACTTTTCTCATTAG  999

seq1  CCCTCTGCGAGGCCCAAAAGAATTC  1012
      |||||||||||||||||||||||||
seq2  CCCTCTGCGAGGCCCAAAAGAATTC  1024