BAC Information

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BAC

Clone NameB6Ng01-201J20
Chromosome11 (Build37)5 (Build37)
Map Location 106,514,491 - 106,514,672124,790,558 - 124,791,282
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2
Downstream genePecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201J20.bB6Ng01-201J20.g
ACCGA022339GA022340
length908725
definitionB6Ng01-201J20.b B6Ng01-201J20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,514,491 - 106,514,672)(124,790,558 - 124,791,282)
sequence
gaattccacacatcacacaattgcagaaagtctctgcagttggcaaaacc
acacctctgctagagcacgaaacagttcataatcagctgctgtggacagt
ctgaagcagccccacatccctatacctggcattaaaataaaagcacattc
tcatttttctgtgttttaaaaagaaaccaaaatatcatatttctcagaac
ttgtcactacaccatacaaccctatcgcctagcaacccatgaccagaggt
ccagcaaagtagctgaaatctggagaggcaccttcactggcatgtttact
atggcactgttcagtaaagccaagatgtggaattaacctttcatcagtgg
atgaatggacaatgataacatggtgtagccaagtaagttctgtgtcagcc
acttgagaagtaaaggcaggaggatcaagagttctaggttgggatggaga
gatgactcacagattaagagcactggctattcttccagaggacccgggtt
caattcccagcaccctcatggcagctcacagctgtctgtgactccagttc
caggggatctgacaccctcatacagacatacatgcaagtgagacaccagc
gaacataaaactaagctggacagtggtggcgcacgcctttaatcccagca
cttgggaggcagaggcaggtggatttctgagttcaaggctagcctggtct
acagagtgagttccaggtcaaccagggctacacagagaaaccctgcctca
aaaagccaaaccaaaccaaaccaaaacctaattatatattttttaaaaaa
tagttcaaatagttcacagtcattcatggcttcatggagtgtttagaccc
aatcaaggctatattagacaatatcaaaaaaaaaaaaaagtggtattacc
tatttcag
gaattcctgtcaactcctgatacccatgagttttacactcctgcccatta
actcttgcagtgccaccaaacaagatctgtggatcaaaacaggaagatag
ctcggaaagtcctccaggagaaagtggatgttttctacaatggtgaaaac
agccccgttcacaaagagaagctcgaggctgagaggagaaagcgagagag
gaagaaaagagcaaaggagactctagaaaagaaaaaattattgaaagaat
tacgggaagcaagtcaaaacatcacagagaaaaaggctgatgctgatggt
ataccaaggggcttccaggaatagaggtggcagtgcctggctccagcatt
ataacatctaaagagaacattctagaactggaaaaggtggcgtatacctg
cagcctcagcacttgggagagctaaggcaggaggattgctgcaaggttca
gaacaacctcacctatatagctagttctgtagcggcctttcctatatggt
gagactgtcccaaatacgtaattagaggctgcagagttagcttagcagtt
gagagagcttgcagttcttgcagaagactcaggtcctgttcccagtattt
cacatggggttgctcccaacctactgcctgtaactacagctccaggagac
ccagtgccactgtctggccttcacaggaaaaaatacactctcatacatac
aaatcccttttggggggaggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106514491_106514672
seq2: B6Ng01-201J20.b_460_933

seq1  --------------------------------------------------  0
                                                        
seq2  GCAGGAGGATCAAGAGTTCTAGGTTGGGATGGAGAGATGACTCACAGATT  50

seq1  --------------------------------------------------  0
                                                        
seq2  AAGAGCACTGGCTATTCTTCCAGAGGACCCGGGTTCAATTCCCAGCACCC  100

seq1  --------------------------------------------------  0
                                                        
seq2  TCATGGCAGCTCACAGCTGTCTGTGACTCCAGTTCCAGGGGATCTGACAC  150

seq1  ------------------GCAGGAGGATCAAGAGTG----TGGGGCTAGC  28
                        ||| | |   ||  || |    |    |||  
seq2  CCTCATACAGACATACATGCAAGTGAGACACCAGCGAACATAAAACTAAG  200

seq1  CAGG--CGTGGTGGCACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGG  76
      | ||   |||||||| ||||||||||||||||||||| ||||||||||||
seq2  CTGGACAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGG  250

seq1  CAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCA  126
      ||||  ||||||||||||| |||| |||||||||||||||||||||||||
seq2  CAGGTGGATTTCTGAGTTCAAGGCTAGCCTGGTCTACAGAGTGAGTTCCA  300

seq1  GAACAGCCAGGGCTATACAGAGAAACCCTGCCTCAAAAAACCAAA--AAA  174
      |  || ||||||||| ||||||||||||||||||||||| |||||  |||
seq2  GGTCAACCAGGGCTACACAGAGAAACCCTGCCTCAAAAAGCCAAACCAAA  350

seq1  --AAAAAAAA----------------------------------------  182
        |||  |||                                        
seq2  CCAAACCAAAACCTAATTATATATTTTTTAAAAAATAGTTCAAATAGTTC  400

seq1  --------------------------------------------------  182
                                                        
seq2  ACAGTCATTCATGGCTTCATGGAGTGTTTAGACCCAATCAAGGCTATATT  450

seq1  ------------------------  182
                              
seq2  AGACAATATCAAAAAAAAAAAAAA  474

seq1: chr5_124790558_124791282
seq2: B6Ng01-201J20.g_67_791

seq1  GAATTCCTGTCAACTCCTGATACCCATGAGTTTTACACTCCTGCCCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCAACTCCTGATACCCATGAGTTTTACACTCCTGCCCATTA  50

seq1  ACTCTTGCAGTGCCACCAAACAAGATCTGTGGATCAAAACAGGAAGATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGCAGTGCCACCAAACAAGATCTGTGGATCAAAACAGGAAGATAG  100

seq1  CTCGGAAAGTCCTCCAGGAGAAAGTGGATGTTTTCTACAATGGTGAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGAAAGTCCTCCAGGAGAAAGTGGATGTTTTCTACAATGGTGAAAAC  150

seq1  AGCCCCGTTCACAAAGAGAAGCTCGAGGCTGAGAGGAGAAAGCGAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCGTTCACAAAGAGAAGCTCGAGGCTGAGAGGAGAAAGCGAGAGAG  200

seq1  GAAGAAAAGAGCAAAGGAGACTCTAGAAAAGAAAAAATTATTGAAAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAGAGCAAAGGAGACTCTAGAAAAGAAAAAATTATTGAAAGAAT  250

seq1  TACGGGAAGCAAGTCAAAACATCACAGAGAAAAAGGCTGATGCTGATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGGAAGCAAGTCAAAACATCACAGAGAAAAAGGCTGATGCTGATGGT  300

seq1  ATACCAAGGGGCTTCCAGGAATAGAGGTGGCAGTGCCTGGCTCCAGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAGGGGCTTCCAGGAATAGAGGTGGCAGTGCCTGGCTCCAGCATT  350

seq1  ATAACATCTAAAGAGAACATTCTAGAACTGGAAAAGGTGGCGTATACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATCTAAAGAGAACATTCTAGAACTGGAAAAGGTGGCGTATACCTG  400

seq1  CAGCCTCAGCACTTGGGAGAGCTAAGGCAGGAGGATTGCTGCAAGGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCAGCACTTGGGAGAGCTAAGGCAGGAGGATTGCTGCAAGGTTCA  450

seq1  GAACAACCTCACCTATATAGCTAGTTCTGTAGCGGCCTTTCCTATATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACCTCACCTATATAGCTAGTTCTGTAGCGGCCTTTCCTATATGGT  500

seq1  GAGACTGTCCCAAATACGTAATTAGAGGCTGCAGAGTTAGCTTAGCAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGTCCCAAATACGTAATTAGAGGCTGCAGAGTTAGCTTAGCAGTT  550

seq1  GAGAGAGCTTGCAGTTCTTGCAGAAGACTCAGGTCCTGTTCCCAGTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGCTTGCAGTTCTTGCAGAAGACTCAGGTCCTGTTCCCAGTATTT  600

seq1  CACATGGGGTTGCTCCCAACCTACTGCCTGTAACTACAGCTCCAGGAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGGTTGCTCCCAACCTACTGCCTGTAACTACAGCTCCAGGAGAC  650

seq1  CCAGTGCCACTGTCTGGCCTTCACAGGAAAAAATACACTCTCATACATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCCACTGTCTGGCCTTCACAGGAAAAAATACACTCTCATACATAC  700

seq1  AAATCCCTTTTGGGGGGAGGGGGGG  725
      |||||||||||||||||||||||||
seq2  AAATCCCTTTTGGGGGGAGGGGGGG  725