BAC Information

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BAC

Clone NameB6Ng01-201N18
Chromosome5 (Build37)
Map Location 18,469,386 - 18,470,450
singlet/doubletsinglet
Overlap genenone
Upstream geneGnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201N18.bB6Ng01-201N18.g
ACCGA022515GA022516
length1,1951,071
definitionB6Ng01-201N18.b B6Ng01-201N18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaa
atcatggactagacaaggctgcccattttctccttacctattcaacatag
tacttgaagtcctagccagagcaattagacaacaaaaggagatcaagggg
atacaaattggaaaggaagaagtcaaaatatcactttttgcagatgatat
gatagtatacataagtgatcctaagaattccaccagagaactcctaaacc
tgataaacagcttcaatgaagtagctggatataatattaactcaaacaag
tcaatggcctttctgtacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaataccttggtg
tgactctaactaaggaagtgaaagatctgtatgataagaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccata
ctcatggattggcaggatcaatagagtaaaaagagctatcttgccaaaaa
caatctacagattcaatgcaatccccatcagaattccaactcaattcttc
aacgaattagaaagggcaatttgcaaattcatttggaataacaaaaaacc
taggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctgtactacagagcaattgtgataaaaactgca
tggtactggtatagtgacagacaagtagaccaatggaagagaattgaaga
cccagaaagtggatcacttgatctttgacaagggagctaaaaccatccag
taggaaaagacagcattttcaaccaatagtgcaggcacaactggtggtta
tcatgtagaagaatgcaaattgattcattcctttctctttgtactacgtc
aaatctagtggatcaggacttcacataaaacagagaacagtgaactgtag
agagaagtggggaaagcttcgaagaaattgggcacaggaaaatctgaaat
tataacagcatgcctgtgcctgtagattgagatcgacaatggaccttaaa
tgcaagctctggtaaggcaagaacagtgtccattagaccataacg
gaattcttaatattttgaattttcatggccattcaccttactctgaagac
ataccacactattaattattattttttgtatgaatctaactcaccttgtc
attttctgtcatatatggggataatgaataggccaaggtatcatcagctt
gtgtttgaagctctggttgattgaacatgcagatgatcacttgatggtgt
ggagccttgagtgtcacgctcagtgcttcatctttagtttgacagcaata
ctgagctaatgacagttttatgtttgtcttatcctgtttgtgctgggaag
ttggttaaatgactgtgtcaagaatgtagcagaaattaaatcatggtttg
gaggcaagtaaggaagtcatttaagagcatgatacagtaatgaagatgtg
tataagtgtatcctgtatctttatgtgctttaaaaaaacaaacaaacaaa
ataaacttgagttcagggaaatatgtctgagtattgaaatataaaaagta
aacaaaaagcattcaaattatttaaaaataacagaccattataactttat
ttaatagagcaatgtatgatttgtccaatggcatgatctgataagttcta
aaaagatcagaggtccagaacacgtaaaacattaaacagtttacctcgtc
attgcataatatgaaaattggtaactataatataacaaagacatttacta
ctgagtagctaatgtaaatgcatctttaaggtcctccatgtttactgtgt
taaggggctcagacctagtgtgataatatagtaggagataataaaatctg
tagtgaaagatctttaggtttgctttgtcagagttctctagagcaacaga
agtgatatgattataatattatatgacattttatttataagaggatattt
tattctattaacagtcacagcaaatatctgggtagtttcaataatggcct
acatgaaggaaaaagaaatcagtattcttctcagtattagaaacctcagt
agccatgtgtttctgagtcactttagctcctctgaagtctgctttttttg
aggtgacattgaaactctgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18469386_18470450
seq2: B6Ng01-201N18.g_64_1134 (reverse)

seq1  TTCAGAGTTTCAATGTCACCTC-AAAAAAGCAGACTTTCAGA-GAGCTAA  48
      | |||||||||||||||||||| |||||||||||| |||||| |||||||
seq2  TCCAGAGTTTCAATGTCACCTCAAAAAAAGCAGAC-TTCAGAGGAGCTAA  49

seq1  GTGGACCTCAGAAACACATTGGCTACTGAGGTTTCTAATACTGAGAAG-A  97
         || |||||||||||| ||||||||||||||||||||||||||||| |
seq2  AGTGA-CTCAGAAACACA-TGGCTACTGAGGTTTCTAATACTGAGAAGAA  97

seq1  TACTGATTTCTTTTTCCTTCATGTA-GCCATTATTG-AACTACCCAGATA  145
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  TACTGATTTCTTTTTCCTTCATGTAGGCCATTATTGAAACTACCCAGATA  147

seq1  TTTGCTGTGACTGTTAATAGAAT-AAATATCCTCTTATAA--TAAATGTC  192
      ||||||||||||||||||||||| ||||||||||||||||   |||||||
seq2  TTTGCTGTGACTGTTAATAGAATAAAATATCCTCTTATAAATAAAATGTC  197

seq1  ATATAATATTATAATCATATCACTTCTGTTGCTCTAGAGAACTCTGACAA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATATTATAATCATATCACTTCTGTTGCTCTAGAGAACTCTGACAA  247

seq1  AGCAAACCTAAAGATCTTTCACTACAGATTTTATTATCTCCTACTATATT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACCTAAAGATCTTTCACTACAGATTTTATTATCTCCTACTATATT  297

seq1  ATCACACTAGGTCTGAG-CCCTTAACACAGTAAACATGGAGGACCTTAAA  341
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATCACACTAGGTCTGAGCCCCTTAACACAGTAAACATGGAGGACCTTAAA  347

seq1  GATGCATTTACATTAGCTACTCAGTAGTAAATGTCTTTGTTATATTATAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATTTACATTAGCTACTCAGTAGTAAATGTCTTTGTTATATTATAG  397

seq1  TTACCAATTTTCATATTATGCAATGACGAGGTAAACTGTTTAATGTTTTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAATTTTCATATTATGCAATGACGAGGTAAACTGTTTAATGTTTTA  447

seq1  CGTGTTCTGGACCTCTGATCTTTTTAGAACTTATCAGATCATGCCATTGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTCTGGACCTCTGATCTTTTTAGAACTTATCAGATCATGCCATTGG  497

seq1  ACAAATCATACATTGCTCTATTAAATAAAGTTATAATGGTCTGTTATTTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCATACATTGCTCTATTAAATAAAGTTATAATGGTCTGTTATTTT  547

seq1  TAAATAATTTGAATGCTTTTTGTTTACTTTTTATATTTCAATACTCAGAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATTTGAATGCTTTTTGTTTACTTTTTATATTTCAATACTCAGAC  597

seq1  ATATTTCCCTGAACTCAAGTTTATTTTGTTTGTTTGTTTTTTTAAAGCAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCCTGAACTCAAGTTTATTTTGTTTGTTTGTTTTTTTAAAGCAC  647

seq1  ATAAAGATACAGGATACACTTATACACATCTTCATTACTGTATCATGCTC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATACAGGATACACTTATACACATCTTCATTACTGTATCATGCTC  697

seq1  TTAAATGACTTCCTTACTTGCCTCCAAACCATGATTTAATTTCTGCTACA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGACTTCCTTACTTGCCTCCAAACCATGATTTAATTTCTGCTACA  747

seq1  TTCTTGACACAGTCATTTAACCAACTTCCCAGCACAAACAGGATAAGACA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGACACAGTCATTTAACCAACTTCCCAGCACAAACAGGATAAGACA  797

seq1  AACATAAAACTGTCATTAGCTCAGTATTGCTGTCAAACTAAAGATGAAGC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAAACTGTCATTAGCTCAGTATTGCTGTCAAACTAAAGATGAAGC  847

seq1  ACTGAGCGTGACACTCAAGGCTCCACACCATCAAGTGATCATCTGCATGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCGTGACACTCAAGGCTCCACACCATCAAGTGATCATCTGCATGT  897

seq1  TCAATCAACCAGAGCTTCAAACACAAGCTGATGATACCTTGGCCTATTCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAACCAGAGCTTCAAACACAAGCTGATGATACCTTGGCCTATTCA  947

seq1  TTATCCCCATATATGACAGAAAATGACAAGGTGAGTTAGATTCATACAAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCCATATATGACAGAAAATGACAAGGTGAGTTAGATTCATACAAA  997

seq1  AAATAATAATTAATAGTGTGGTATGTCTTCAGAGTAAGGTGAATGGCCAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAATTAATAGTGTGGTATGTCTTCAGAGTAAGGTGAATGGCCAT  1047

seq1  GAAAATTCAAAATATTAAGAATTC  1065
      ||||||||||||||||||||||||
seq2  GAAAATTCAAAATATTAAGAATTC  1071