BAC Information

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BAC

Clone NameB6Ng01-201O11
Chromosome5 (Build37)
Map Location 138,775,922 - 138,917,620
singlet/doubletdoublet
Overlap geneGot2-ps1, 2610020C11Rik
Upstream geneEphb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3
Downstream geneLOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201O11.bB6Ng01-201O11.g
ACCGA022547GA022548
length9521,048
definitionB6Ng01-201O11.b B6Ng01-201O11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,916,668 - 138,917,620)(138,775,922 - 138,776,718)
sequence
gaattcagtgctggaactgagggagaggccatgagtgagtgctgcttact
tgcttgctccatgtgacttctcagcttgatttcttatgccaccccaaacc
aggtgaccagggaagacacctccttcagtgagctgggccctcccatgtca
atcattaatcaagaatgaagcacaaacttgcctgaaagccaccctggtgg
aaacatttccgtggctgagcttctgtcttccctctctctttctgtaggcc
tgtgaaacatggggtggggggaatggctgagcttcagtcttcctgataac
tgtcaagtctaacttcccagatgctgctgtatcaagttgacaagaaacta
gccagcatatatgtgacttggtacttgagaagctggggtagaggaagcta
aggttttgaaaccagcatgtgcttcatggctggatctgtatcccagccaa
ccacaaaatggagacaatagtgccagccctttcaactatagctaaaaccc
aaagagcctagagcaaagattcttgtgtagggttgcctggcaagaccatg
aatgtgctcttacctttaggcataatgtttttgtacactgtttaaagttt
acctttgtatgttatttaaatcactgttttctctatcccactatctgagt
tctatcctgacatagctctgttctgttttattcttagaaagtcctgtctc
aagtttgtgtaaacactgctcctcattccttctctgccttgccaataaaa
gccaatgagccaatgcagaactttagagaggatatggtgggacttcctat
tctaggaggaatggggaaagaaacaggaagggaaggaatggagatatgag
gagaggttcatgaaacttgtggagagagaggtgggttcagaaagacaaaa
attgccagtaatgaaatattttctgggaggaatccctctgagcttgcaat
tt
gaattctacccgagtggatcctggcttggcatcgggaaagaatgggctgg
gataggtgccctcactgtggcccttgttttggcatgcatgttgtgtgtat
ggtgtatatgtcggttgcggaatgctcaggtctacactgccgccatggtg
gtgcaagcttttgccgcagtggaagcagggcagtcacctcagatttgtct
tgctgccatgaagaatgaacaatgaagccatcgctctgcaggcttgtaag
gctaagcactgcacagaggtcagtctggaagctgtttgacgatctctggg
aggtatgtctgattgcatgagggttgagtgtcctagtgtccttcctctag
gaaaaatggcacgggagcaggtcagggttgctctgggtaaaaacctgtga
gcctaagagtcaatcctgtacatggcccctatttctgcacactggggatc
agacctctatcttcacccacagagcttgcttcaaaagaatataaaagggg
gaattgtgggaagccattccagactccctagccagccggacagaaatctg
tgccaggcagtaaacaagcccatatttggtggatggctcacccttaatcc
ctgattggctgagcaagcctgcctggtgaggcgatgtgacctgtggtgat
tggttgaggcgtggttgtggcttgagtggataaaaatgcttgtaccctga
gaggcggggaatttgaagagagaagctgcctgagtaaactgctttaagaa
caaccggtggttgcattttccttgctggtcgagttggacacaacagccag
tgaagaaagagatgaagattgaagagaaaaagtcatgtctattgcaacag
agatcagcaagtcagcttcatggcagaaaggaggctttggagaaagggta
agaaagtccagaatatttctgttttaaattatctgttgtggggaggaaga
agccgcttcattgtagatcatgcagtgcttttgagagatggtaaattttg
gtcacgatccagaagttgctcactggtttgaaccttggcagatagtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138916668_138917620
seq2: B6Ng01-201O11.b_51_1002 (reverse)

seq1  AAATCTGCAAGCTCATGAGGATTCCTCCCAGAAAATATCTCATTACTTGC  50
      |||| ||||||||||   |||||||||||||||||||| |||||||| ||
seq2  AAAT-TGCAAGCTCAGAGGGATTCCTCCCAGAAAATATTTCATTACTGGC  49

seq1  AATTTTTGTCTTTTCTTGATCCACCTCTCTCTCCTCAAGCTTCATGAACC  100
      |||||||||| |||||  | |||||||||||||| |||| ||||||||||
seq2  AATTTTTGTC-TTTCTGAACCCACCTCTCTCTCCACAAGTTTCATGAACC  98

seq1  TCTCCTCATATCTCCATTCCTTCCCTTCCTGTTTCTTTCCCCATTCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCATATCTCCATTCCTTCCCTTCCTGTTTCTTTCCCCATTCCTCC  148

seq1  TAGAATAGGAAGTCCCACCATATCCTCTCTAAAGTTCTGCATTGGCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAGGAAGTCCCACCATATCCTCTCTAAAGTTCTGCATTGGCTCAT  198

seq1  TGGCTTTTATTGGCAAGGCAGAGAAGGAATGAGGAGCAGTGTTTACACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTATTGGCAAGGCAGAGAAGGAATGAGGAGCAGTGTTTACACAA  248

seq1  ACTTGAGACAGGACTTTCTAAGAAT-AAACAGAACAGAGCTATGTCAGGA  299
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACTTGAGACAGGACTTTCTAAGAATAAAACAGAACAGAGCTATGTCAGGA  298

seq1  TAGAACTCAGATAGTGGGATAGAGAAAACAGTGATTTAAATAACATACAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTCAGATAGTGGGATAGAGAAAACAGTGATTTAAATAACATACAA  348

seq1  AGGTAAACTTTAAACAGTGTACAAAAACATTATGCCTAAAGGTAAGAGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAACTTTAAACAGTGTACAAAAACATTATGCCTAAAGGTAAGAGCA  398

seq1  CATTCATGGTCTTGCCAGGCAACCCTACACAAGAATCTTTGCTCTAGGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATGGTCTTGCCAGGCAACCCTACACAAGAATCTTTGCTCTAGGCT  448

seq1  CTTTGGGTTTTAGCTATAGTTGAAAGGGCTGGCACTATTGTCTCCATTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGTTTTAGCTATAGTTGAAAGGGCTGGCACTATTGTCTCCATTTT  498

seq1  GTGGTTGGCTGGGATACAGATCCAGCCATGAAGCACATGCTGGTTTCAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGGCTGGGATACAGATCCAGCCATGAAGCACATGCTGGTTTCAAA  548

seq1  ACCTTAGCTTCCTCTACCCCAGCTTCTCAAGTACCAAGTCACATATATGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGCTTCCTCTACCCCAGCTTCTCAAGTACCAAGTCACATATATGC  598

seq1  TGGCTAGTTTCTTGTCAACTTGATACAGCAGCATCTGGGAAGTTAGACTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGTTTCTTGTCAACTTGATACAGCAGCATCTGGGAAGTTAGACTT  648

seq1  GACAGTTATCAGGAAGACTGAAGCTCAGCCATTCCCCCCACCCCATGTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTATCAGGAAGACTGAAGCTCAGCCATTCCCCCCACCCCATGTTT  698

seq1  CACAGGCCTACAGAAAGAGAGAGGGAAGACAGAAGCTCAGCCACGGAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCCTACAGAAAGAGAGAGGGAAGACAGAAGCTCAGCCACGGAAAT  748

seq1  GTTTCCACCAGGGTGGCTTTCAGGCAAGTTTGTGCTTCATTCTTGATTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCACCAGGGTGGCTTTCAGGCAAGTTTGTGCTTCATTCTTGATTAA  798

seq1  TGATTGACATGGGAGGGCCCAGCTCACTGAAGGAGGTGTCTTCCCTGGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGACATGGGAGGGCCCAGCTCACTGAAGGAGGTGTCTTCCCTGGTC  848

seq1  ACCTGGTTTGGGGTGGCATAAGAAATCAAGCTGAGAAGTCACATGGAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTTTGGGGTGGCATAAGAAATCAAGCTGAGAAGTCACATGGAGCA  898

seq1  AGCAAGTAAGCAGCACTCACTCATGGCCTCTCCCTCAGTTCCAGCACTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTAAGCAGCACTCACTCATGGCCTCTCCCTCAGTTCCAGCACTGA  948

seq1  ATTC  953
      ||||
seq2  ATTC  952

seq1: chr5_138775922_138776718
seq2: B6Ng01-201O11.g_368_1112

seq1  TATGTCTGATTGCATGAGGGTTGAGTGTCCTAGTGTCCTTCCTCTAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTGATTGCATGAGGGTTGAGTGTCCTAGTGTCCTTCCTCTAGGAA  50

seq1  AAATGGCACGGGAGCAGGTCAGGGTTGCTCTGGGTAAAAACCTGTGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCACGGGAGCAGGTCAGGGTTGCTCTGGGTAAAAACCTGTGAGCC  100

seq1  TAAGAGTCAATCCTGTACATGGCCCCTATTTCTGCACACTGGGGATCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTCAATCCTGTACATGGCCCCTATTTCTGCACACTGGGGATCAGA  150

seq1  CCTCTATCTTCACCCACAGAGCTTGCTTCAAAAGAATATAAAAGGGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATCTTCACCCACAGAGCTTGCTTCAAAAGAATATAAAAGGGGGAA  200

seq1  TTGTGGGAAGCCATTCCAGACTCCCTAGCCAGCCGGACAGAAATCTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGAAGCCATTCCAGACTCCCTAGCCAGCCGGACAGAAATCTGTGC  250

seq1  CAGGCAGTAAACAAGCCCATATTTGGTGGATGGCTCACCCTTAATCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGTAAACAAGCCCATATTTGGTGGATGGCTCACCCTTAATCCCTG  300

seq1  ATTGGCTGAGCAAGCCTGCCTGGTGAGGCGATGTGACCTGTGGTGATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTGAGCAAGCCTGCCTGGTGAGGCGATGTGACCTGTGGTGATTGG  350

seq1  TTGAGGCGTGGTTGTGGCTTGAGTGGATAAAAATGCTTGTACCCTGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCGTGGTTGTGGCTTGAGTGGATAAAAATGCTTGTACCCTGAGAG  400

seq1  GCGGGGAATTTGAAGAGAGAAGCTGCCTGAGTAAACTGCTTTAAGAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGAATTTGAAGAGAGAAGCTGCCTGAGTAAACTGCTTTAAGAACAA  450

seq1  CCGGTGGTTGCATTTTCCTTGCTGGTCGAGTTGGACACAACAGCCAG-GA  499
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCGGTGGTTGCATTTTCCTTGCTGGTCGAGTTGGACACAACAGCCAGTGA  500

seq1  AGAAAGAGATGAAGA-TGAAGAGAAAAAGTCATGTCTATTGCAACAGAGA  548
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGATGAAGATTGAAGAGAAAAAGTCATGTCTATTGCAACAGAGA  550

seq1  TCAGCAAGTCAGCTTCATGGCAG-AAGGAGGCTTTGGAGAAAGGGTAAGA  597
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCAGCAAGTCAGCTTCATGGCAGAAAGGAGGCTTTGGAGAAAGGGTAAGA  600

seq1  AAGCCCAG-ATATTTCTGTTTTAAATTATCTG-TGT-GGGAGGAAGAAGC  644
      ||| |||| ||||||||||||||||||||||| ||| |||||||||||||
seq2  AAGTCCAGAATATTTCTGTTTTAAATTATCTGTTGTGGGGAGGAAGAAGC  650

seq1  AGC-TCATTGTAGATCATGCAGTGGTTTTGAGAGGATGGTAAAATTTTTG  693
       || |||||||||||||||||||| |||||||| |||||| ||||||| |
seq2  CGCTTCATTGTAGATCATGCAGTGCTTTTGAGA-GATGGT-AAATTTTGG  698

seq1  TCAGGATCCAGAAAGTTGGTTCACTGGGTTTTGACCCTGGGCAAGTAGTT  743
      ||| ||||||| ||||| | |||||||  ||||| ||| ||||  ||| |
seq2  TCACGATCCAG-AAGTT-GCTCACTGG--TTTGAACCTTGGCAGATAG-T  743

seq1  ATTTCCTTCAGATTGTAAGTGTGAGTTAACCTGAACAGTTTTGGCAGATA  793
      ||                                                
seq2  AT------------------------------------------------  745

seq1  GTAT  797
          
seq2  ----  745