BAC Information

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BAC

Clone NameB6Ng01-202A22
Chromosome5 (Build37)
Map Location 66,423,485 - 66,510,434
singlet/doubletdoublet
Overlap geneBC013481
Upstream gene9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik
Downstream geneLOC626714, LOC666854, LOC100042394, Nsun7, Apbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662, Phox2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202A22.bB6Ng01-202A22.g
ACCGA022656GA022657
length4031,052
definitionB6Ng01-202A22.b B6Ng01-202A22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,510,203 - 66,510,434)(66,423,485 - 66,424,541)
sequence
agaagagcacttgtaggagttgacataggagtcaatgctattcttcccat
gtgggtcccagggatggaatgttggtcttcaggcttgtgtaggaagtgct
tacacctactgagccatctcactggccagatggaccctttaaaatgcatt
taaaattattctctcattctctctctctctctctctctctctctctctct
ctctctcacacacacacacacacacacacgtgcgtgcgcgcgcgcgcgtg
tgtgtgtgtcactctatatctatttccctatatatctctttctttctttt
tgtgagagagagtgtgtgtgtgtgtgtgtagggttgtctcttagacacct
ctgtctctgtgcaattaaacacgcgctctctcactctgtgtctctgtgtg
tgt
gaattcaatattggataactccctcttttgtttgccgccttgttttctga
ggcaggattgctcactgaaccgatttggctggacaggctggccggtacat
ttcagggatccaccgttctcggctcaccagatctcaccatctagcaccga
ggttgcagccagcgcattgccatgttacgtgggtgttggtatccagcttc
tggccctcatgagccttgctgagtgagcctcctcctaagccacatcacat
gtatttcatatacaatctgttgttgttttctttgaacaggttggccggtc
ccaggttagcctctagctcatgacaaccaccttgctcagcctcctaagtg
ctggtatttcgggcatgcgttatcactctctgatagtttcacacatagat
aaaatatattcccatagtcccagttccatcccttgccccacaacccccca
tgcaggctctcatcttaatctaagctgcagtgcagtatttatgaaatctg
gacaaagaaatattggtgagagggcacgactcagttcctgaccctctcat
gtgaatgacagtttgagagacagaggacgttttcattcttctacccatcc
atccatctatcatctatctaccattcacccatctatcccccacccaccca
atagtttctgagtaagctaaccctgtgcatccccatgttagctgcaggta
ggccttgtggcgctcacctcccagctagctgaattatgctgagacacaag
gaagttgaagtctaagctctttacatgcctgcctactgaccaggaactgc
ttccaaagggtcaagcttgacttcttaacaattttgtttctaataaggat
cacagtccttcaaggtcaatgcccagccacctcagaatttaataattagt
cctgaatttgggggagaaccaggagggcctgggatacctgggagggatta
gaaggagaaaaggcaagaggggaattggtgtatttatatttttatcaaat
atatttataacgaaaaggaatggtctgtgatatggagcaaaaaatactag
cc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_66510203_66510434
seq2: B6Ng01-202A22.b_45_453 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  ACACACACAGAGACACAGAGTGAGAGAGCGCGTGTTTAATTGCACAGAGA  50

seq1  --------------------------------------------------  0
                                                        
seq2  CAGAGGTGTCTAAGAGACAACCCTACACACACACACACACACTCTCTCTC  100

seq1  ----------------------------------------------ACAC  4
                                                    ||||
seq2  ACAAAAAGAAAGAAAGAGATATATAGGGAAATAGATATAGAGTGACACAC  150

seq1  ACACA-------------------------------GAGAGAGAGAGAGA  23
      |||||                               | | | | | ||||
seq2  ACACACGCGCGCGCGCGCACGCACGTGTGTGTGTGTGTGTGTGTGTGAGA  200

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAGAGAATAATT  73
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAGAGAATAATT  250

seq1  TTAAATGCATTTTAAAGGGTCCATCTGGCCAGTGAGATGGCTCAGTAGGT  123
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGCATTTTAAAGGGTCCATCTGGCCAGTGAGATGGCTCAGTAGGT  300

seq1  GTAAGCACTTCCTACACAAGCCTGAAGACCAACATTCCATCCCTGGGACC  173
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCACTTCCTACACAAGCCTGAAGACCAACATTCCATCCCTGGGACC  350

seq1  CACATGGGAAGAATAGCATTGACTCCTATGTCAACTCCTACAAGTGCTCT  223
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGAAGAATAGCATTGACTCCTATGTCAACTCCTACAAGTGCTCT  400

seq1  TCTGAATTC  232
      |||||||||
seq2  TCTGAATTC  409

seq1: chr5_66423485_66424541
seq2: B6Ng01-202A22.g_65_1116

seq1  GAATTCAATATTGGATAACTCCCTCTTTTGTTTGCCGCCTTGTTTTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATTGGATAACTCCCTCTTTTGTTTGCCGCCTTGTTTTCTGA  50

seq1  GGCAGGATTGCTCACTGAACCGATTTGGCTGGACAGGCTGGCCGGTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGATTGCTCACTGAACCGATTTGGCTGGACAGGCTGGCCGGTACAT  100

seq1  TTCAGGGATCCACCGTTCTCGGCTCACCAGATCTCACCATCTAGCACCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGATCCACCGTTCTCGGCTCACCAGATCTCACCATCTAGCACCGA  150

seq1  GGTTGCAGCCAGCGCATTGCCATGTTACGTGGGTGTTGGTATCCAGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAGCCAGCGCATTGCCATGTTACGTGGGTGTTGGTATCCAGCTTC  200

seq1  TGGCCCTCATGAGCCTTGCTGAGTGAGCCTCCTCCTAAGCCACATCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTCATGAGCCTTGCTGAGTGAGCCTCCTCCTAAGCCACATCACAT  250

seq1  GTATTTCATATACAATCTGTTGTTGTTTTCTTTGAACAGGTTGGCCGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCATATACAATCTGTTGTTGTTTTCTTTGAACAGGTTGGCCGGTC  300

seq1  CCAGGTTAGCCTCTAGCTCATGACAACCACCTTGCTCAGCCTCCTAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTAGCCTCTAGCTCATGACAACCACCTTGCTCAGCCTCCTAAGTG  350

seq1  CTGGTATTTCGGGCATGCGTTATCACTCTCTGATAGTTTCACACATAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATTTCGGGCATGCGTTATCACTCTCTGATAGTTTCACACATAGAT  400

seq1  AAAATATATTCCCATAGTCCCAGTTCCATCCCTTGCCCCACAACCCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATTCCCATAGTCCCAGTTCCATCCCTTGCCCCACAACCCCCCA  450

seq1  TGCAGGCTCTCATCTTAATCTAAGCTGCAGTGCAGTATTTATGAAATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCTCTCATCTTAATCTAAGCTGCAGTGCAGTATTTATGAAATCTG  500

seq1  GACAAAGAAATATTGGTGAGAGGGCACGACTCAGTTCCTGACCCTCTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGAAATATTGGTGAGAGGGCACGACTCAGTTCCTGACCCTCTCAT  550

seq1  GTGAATGACAGTTTGAGAGACAGAGGACGTTTTCATTCTTCTACCCATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGACAGTTTGAGAGACAGAGGACGTTTTCATTCTTCTACCCATCC  600

seq1  ATCCATCTATCATCTATCTACCATTCACCCATCTATCCCCCACCCACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCTATCATCTATCTACCATTCACCCATCTATCCCCCACCCACCCA  650

seq1  ATAGTTTCTGAGTAAGCTAACCCTGTGCATCCCCATGTTAGCTGCAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTCTGAGTAAGCTAACCCTGTGCATCCCCATGTTAGCTGCAGGTA  700

seq1  GGCCTTGTGGCGCTCACCTCCCAGCTAGCTGAATTATGCTGAGACACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGTGGCGCTCACCTCCCAGCTAGCTGAATTATGCTGAGACACAAG  750

seq1  GAAGTTGAAGTCTAAGCTCTTTACATGCCTGCCTACTGACCAGGAACTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGAAGTCTAAGCTCTTTACATGCCTGCCTACTGACCAGGAACTGC  800

seq1  TTCCAAAGGGTCAAGCTTGACTTCTTAACAA-TTTGTTTCTAATAA-GAT  848
      ||||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  TTCCAAAGGGTCAAGCTTGACTTCTTAACAATTTTGTTTCTAATAAGGAT  850

seq1  CACAGTCC-TCAAGGTCAATGCCCAGCCACCTCAGAATTTAATAATTAGT  897
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCCTTCAAGGTCAATGCCCAGCCACCTCAGAATTTAATAATTAGT  900

seq1  CCTGAATTTGGGGGAGAACCAGGAGGGC--TGGATACCTGGGAGGGATTA  945
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  CCTGAATTTGGGGGAGAACCAGGAGGGCCTGGGATACCTGGGAGGGATTA  950

seq1  GAAGGAGAAAAGGCAAGAGGGGGAAATGGTGTAATTATATTTTAATTAAA  995
      |||||||||||||||||| |||||| ||||||| ||||||||| || |||
seq2  GAAGGAGAAAAGGCAAGA-GGGGAATTGGTGTATTTATATTTTTATCAAA  999

seq1  AATTATATTTAAAAAAGGAAAAGAAATGGCCTTGTGATAGGGAAGAAAAA  1045
         |||||||  | || |||||| ||||| | ||||||| |   ||  ||
seq2  ---TATATTT--ATAACGAAAAGGAATGGTC-TGTGATATG---GAGCAA  1040

seq1  AAAATACTAGCC  1057
      ||||||||||||
seq2  AAAATACTAGCC  1052